Wall clock time and date at job start Mon Mar 30 2020 04:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47176 * 2 1 4 4 C 1.50698 * 109.47298 * 119.99953 * 2 1 3 5 5 C 1.35356 * 126.90738 * 305.39855 * 4 2 1 6 6 C 1.50696 * 126.75470 * 359.96480 * 5 4 2 7 7 C 1.52998 * 109.47208 * 96.61643 * 6 5 4 8 8 N 1.46902 * 109.46866 * 184.51239 * 7 6 5 9 9 N 1.33770 * 106.49288 * 180.22191 * 5 4 2 10 10 N 1.28635 * 108.88770 * 359.56569 * 9 5 4 11 11 N 1.28721 * 110.17588 * 0.44851 * 10 9 5 12 12 C 1.46500 * 125.86537 * 179.70093 * 11 10 9 13 13 C 1.53001 * 109.47151 * 270.01877 * 12 11 10 14 14 C 1.52994 * 109.46907 * 180.02562 * 13 12 11 15 15 C 1.50708 * 109.46902 * 180.02562 * 14 13 12 16 16 H 1.07994 * 119.99932 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99549 * 180.02562 * 15 14 13 18 18 N 1.31522 * 119.99491 * 180.02562 * 17 15 14 19 19 Si 1.86796 * 120.00480 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.47118 * 90.00133 * 19 17 15 21 21 H 1.48500 * 109.47090 * 210.00271 * 19 17 15 22 22 H 1.48501 * 109.46866 * 329.99907 * 19 17 15 23 23 H 1.08996 * 109.47278 * 307.21804 * 1 2 3 24 24 H 1.09004 * 109.46935 * 67.21324 * 1 2 3 25 25 H 1.08996 * 109.47346 * 187.21342 * 1 2 3 26 26 H 1.09000 * 109.47072 * 240.00394 * 2 1 3 27 27 H 1.09004 * 109.47185 * 176.32901 * 3 2 1 28 28 H 1.09006 * 109.47001 * 296.33111 * 3 2 1 29 29 H 1.08996 * 109.47278 * 56.33028 * 3 2 1 30 30 H 1.08993 * 109.47107 * 336.61293 * 6 5 4 31 31 H 1.09005 * 109.46878 * 216.61417 * 6 5 4 32 32 H 1.08995 * 109.47383 * 64.50595 * 7 6 5 33 33 H 1.09004 * 109.47107 * 304.50461 * 7 6 5 34 34 H 1.00908 * 110.99847 * 180.02562 * 8 7 6 35 35 H 1.00906 * 111.00047 * 303.94371 * 8 7 6 36 36 H 1.08994 * 109.47384 * 30.03115 * 12 11 10 37 37 H 1.09004 * 109.46559 * 150.02624 * 12 11 10 38 38 H 1.08989 * 109.47540 * 300.00776 * 13 12 11 39 39 H 1.09004 * 109.46779 * 60.00881 * 13 12 11 40 40 H 1.08997 * 109.47746 * 300.00423 * 14 13 12 41 41 H 1.09000 * 109.47276 * 60.00528 * 14 13 12 42 42 H 0.97000 * 119.99674 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.7122 -0.4340 2.5162 6 6 0.7817 0.6475 3.0014 7 6 -0.6073 0.0540 3.2446 8 7 -1.5405 1.1270 3.6133 9 7 2.3888 -1.3061 3.2719 10 7 3.0748 -2.0776 2.5045 11 7 2.8934 -1.7533 1.2721 12 6 3.5132 -2.4016 0.1137 13 6 4.8380 -1.7083 -0.2104 14 6 5.4849 -2.3849 -1.4205 15 6 6.7902 -1.7024 -1.7395 16 1 7.1249 -0.8697 -1.1389 17 6 7.5568 -2.1412 -2.7981 18 7 8.6962 -1.5459 -3.0761 19 14 6.9781 -3.5821 -3.8365 20 1 6.1534 -3.0796 -4.9645 21 1 8.1560 -4.3117 -4.3710 22 1 6.1651 -4.5005 -2.9994 23 1 -0.3633 0.6216 0.8183 24 1 -0.3633 0.3980 -0.9475 25 1 -0.3634 -1.0195 0.1290 26 1 1.8933 -0.5138 -0.8900 27 1 3.1280 1.4432 0.0658 28 1 1.7313 1.9370 -0.9211 29 1 1.6240 1.9750 0.8552 30 1 0.7145 1.4333 2.2491 31 1 1.1656 1.0668 3.9314 32 1 -0.5544 -0.6753 4.0529 33 1 -0.9575 -0.4356 2.3358 34 1 -2.4657 0.7602 3.7797 35 1 -1.2049 1.6382 4.4159 36 1 3.6984 -3.4514 0.3408 37 1 2.8451 -2.3279 -0.7444 38 1 4.6527 -0.6585 -0.4375 39 1 5.5061 -1.7819 0.6477 40 1 5.6702 -3.4349 -1.1939 41 1 4.8167 -2.3110 -2.2785 42 1 9.2354 -1.8544 -3.8211 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958544013.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:10 Heat of formation + Delta-G solvation = 42.216056 kcal Electronic energy + Delta-G solvation = -20608.168598 eV Core-core repulsion = 17623.306957 eV Total energy + Delta-G solvation = -2984.861641 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.36550 -37.67602 -37.39634 -35.89867 -34.96963 -33.34507 -31.74857 -29.54619 -28.90410 -28.03795 -25.67658 -24.18966 -23.36348 -22.38629 -21.73310 -20.98470 -19.04553 -18.07137 -17.26259 -16.79357 -16.43442 -16.24302 -15.96065 -15.64579 -15.17064 -14.94855 -14.82268 -14.16175 -13.98725 -13.97887 -13.62812 -13.23524 -13.12210 -12.96798 -12.84200 -12.74144 -12.40840 -12.21697 -12.15160 -12.04739 -11.94480 -11.84133 -11.63934 -11.46200 -11.30009 -10.85856 -10.78320 -9.93221 -9.59998 -8.30925 -6.37339 0.60307 1.37669 1.40641 1.42577 1.48033 1.51875 2.35934 3.04795 3.24552 3.46597 3.65414 3.73739 3.84391 3.90147 4.15574 4.18029 4.20657 4.25005 4.39861 4.41744 4.44851 4.58652 4.67107 4.76369 4.84535 4.87129 4.96742 5.01214 5.04605 5.15214 5.16063 5.21953 5.31921 5.40336 5.44558 5.53841 5.58630 5.67687 6.21094 6.23287 6.63000 6.70753 7.27425 7.51571 8.86250 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.032470 B = 0.004015 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.135635 B = 6972.663946 C = 7216.130478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.024 4.024 3 C -0.145 4.145 4 C 0.001 3.999 5 C -0.029 4.029 6 C -0.029 4.029 7 C 0.072 3.928 8 N -0.848 5.848 9 N -0.302 5.302 10 N -0.127 5.127 11 N -0.281 5.281 12 C 0.111 3.889 13 C -0.102 4.102 14 C -0.004 4.004 15 C -0.537 4.537 16 H 0.023 0.977 17 C 0.002 3.998 18 N -0.954 5.954 19 Si 0.956 3.044 20 H -0.260 1.260 21 H -0.289 1.289 22 H -0.238 1.238 23 H 0.077 0.923 24 H 0.084 0.916 25 H 0.052 0.948 26 H 0.088 0.912 27 H 0.035 0.965 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.105 0.895 31 H 0.075 0.925 32 H 0.017 0.983 33 H 0.077 0.923 34 H 0.352 0.648 35 H 0.347 0.653 36 H 0.114 0.886 37 H 0.133 0.867 38 H 0.057 0.943 39 H 0.040 0.960 40 H 0.030 0.970 41 H 0.040 0.960 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.685 3.182 6.425 24.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.044 4.044 3 C -0.202 4.202 4 C -0.132 4.132 5 C -0.169 4.169 6 C -0.068 4.068 7 C -0.059 4.059 8 N -0.379 5.379 9 N -0.167 5.167 10 N -0.104 5.104 11 N -0.074 5.074 12 C -0.009 4.009 13 C -0.141 4.141 14 C -0.042 4.042 15 C -0.575 4.575 16 H 0.041 0.959 17 C -0.195 4.195 18 N -0.594 5.594 19 Si 0.778 3.222 20 H -0.185 1.185 21 H -0.216 1.216 22 H -0.161 1.161 23 H 0.096 0.904 24 H 0.103 0.897 25 H 0.071 0.929 26 H 0.106 0.894 27 H 0.054 0.946 28 H 0.105 0.895 29 H 0.091 0.909 30 H 0.123 0.877 31 H 0.094 0.906 32 H 0.035 0.965 33 H 0.095 0.905 34 H 0.166 0.834 35 H 0.160 0.840 36 H 0.132 0.868 37 H 0.151 0.849 38 H 0.076 0.924 39 H 0.059 0.941 40 H 0.048 0.952 41 H 0.058 0.942 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -22.622 2.447 6.594 23.690 hybrid contribution 0.511 -0.432 -0.127 0.682 sum -22.110 2.015 6.467 23.124 Atomic orbital electron populations 1.22005 0.91268 1.02490 1.04338 1.19850 0.97817 0.95719 0.91059 1.21901 1.00241 0.94118 1.03986 1.22539 0.97533 0.93734 0.99412 1.21996 1.03819 1.01621 0.89436 1.20001 0.91184 0.93178 1.02451 1.21674 0.91394 0.92654 1.00205 1.58714 1.05890 1.27830 1.45508 1.74927 1.08794 1.05662 1.27293 1.78252 1.21662 1.22650 0.87828 1.47578 1.29519 1.22688 1.07612 1.22490 0.95506 0.98515 0.84360 1.21609 0.93800 0.99736 0.98929 1.19429 0.94324 0.96302 0.94135 1.21402 1.05593 1.16455 1.14093 0.95851 1.26108 0.94560 1.00076 0.98740 1.70090 1.14811 1.43817 1.30712 0.85582 0.78347 0.79112 0.79156 1.18492 1.21561 1.16114 0.90371 0.89746 0.92923 0.89376 0.94553 0.89476 0.90946 0.87707 0.90642 0.96470 0.90493 0.83409 0.83977 0.86779 0.84933 0.92428 0.94074 0.95195 0.94220 0.92439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 8.07 71.98 0.58 -1.52 16 2 C -0.02 -0.47 3.02 -11.54 -0.03 -0.50 16 3 C -0.14 -2.75 9.05 71.98 0.65 -2.10 16 4 C 0.00 0.04 5.70 41.36 0.24 0.27 16 5 C -0.03 -0.79 6.33 41.60 0.26 -0.52 16 6 C -0.03 -0.57 5.08 29.85 0.15 -0.42 16 7 C 0.07 1.21 6.22 86.30 0.54 1.74 16 8 N -0.85 -10.40 9.62 -186.72 -1.80 -12.20 16 9 N -0.30 -10.48 12.41 -48.60 -0.60 -11.08 16 10 N -0.13 -4.60 13.17 37.02 0.49 -4.11 16 11 N -0.28 -8.71 3.34 -334.40 -1.12 -9.83 16 12 C 0.11 3.12 6.09 86.38 0.53 3.65 16 13 C -0.10 -3.76 5.48 30.59 0.17 -3.59 16 14 C 0.00 -0.17 4.04 29.85 0.12 -0.04 16 15 C -0.54 -30.26 9.66 25.60 0.25 -30.01 16 16 H 0.02 1.48 7.99 -2.91 -0.02 1.46 16 17 C 0.00 0.10 5.47 84.65 0.46 0.57 16 18 N -0.95 -59.45 13.96 21.45 0.30 -59.15 16 19 Si 0.96 41.96 27.47 68.60 1.88 43.85 16 20 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 21 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 22 H -0.24 -9.35 6.54 99.48 0.65 -8.70 16 23 H 0.08 1.11 4.58 -2.39 -0.01 1.10 16 24 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 25 H 0.05 0.80 8.12 -2.39 -0.02 0.78 16 26 H 0.09 1.68 6.80 -2.39 -0.02 1.67 16 27 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 28 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 29 H 0.07 1.23 5.79 -2.39 -0.01 1.21 16 30 H 0.10 1.80 4.48 -2.39 -0.01 1.79 16 31 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 32 H 0.02 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.08 1.29 6.37 -2.39 -0.02 1.27 16 34 H 0.35 3.21 9.08 -89.69 -0.81 2.40 16 35 H 0.35 3.58 8.99 -89.69 -0.81 2.77 16 36 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 37 H 0.13 2.84 7.04 -2.39 -0.02 2.82 16 38 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.03 1.23 7.20 -2.39 -0.02 1.22 16 41 H 0.04 1.52 7.57 -2.39 -0.02 1.51 16 42 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -71.88 332.38 2.42 -69.46 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -0.64 Total: 15.54 kcal Atomic # 6 Polarization: -36.39 SS G_CDS: 3.91 Total: -32.48 kcal Atomic # 7 Polarization: -93.64 SS G_CDS: -2.73 Total: -96.37 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 1.88 Total: 43.85 kcal Total: -71.88 2.42 -69.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958544013.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.675 kcal (2) G-P(sol) polarization free energy of solvation -71.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds