Wall clock time and date at job start Mon Mar 30 2020 05:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31007 * 1 3 3 Si 1.86802 * 120.00072 * 2 1 4 4 H 1.48497 * 109.47286 * 269.99926 * 3 2 1 5 5 H 1.48500 * 109.47104 * 30.00144 * 3 2 1 6 6 H 1.48504 * 109.47164 * 149.99920 * 3 2 1 7 7 C 1.39899 * 120.00027 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00146 * 179.97438 * 7 2 1 9 9 C 1.39805 * 120.00182 * 0.02562 * 7 2 1 10 10 C 1.40106 * 126.89424 * 359.97438 * 9 7 2 11 11 N 1.32193 * 108.15188 * 180.02562 * 10 9 7 12 12 C 1.32935 * 110.00403 * 359.97438 * 11 10 9 13 13 C 1.40648 * 132.87275 * 180.02562 * 12 11 10 14 14 Br 1.89105 * 120.72974 * 0.02562 * 13 12 11 15 15 C 1.36625 * 118.54660 * 179.97438 * 13 12 11 16 16 N 1.33434 * 120.46077 * 359.97438 * 15 13 12 17 17 C 1.30638 * 121.83832 * 0.02562 * 16 15 13 18 18 N 1.35732 * 121.07622 * 0.28205 * 17 16 15 19 19 H 0.96998 * 119.99979 * 359.97438 * 1 2 3 20 20 H 1.08000 * 125.93063 * 359.97438 * 10 9 7 21 21 H 1.08001 * 119.77357 * 180.02562 * 15 13 12 22 22 H 1.08002 * 119.45646 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6177 0.0000 4 1 2.4916 2.0464 -1.4000 5 1 1.4416 2.6527 0.7001 6 1 3.5417 1.4402 0.7001 7 6 2.0096 -1.2116 0.0005 8 1 3.0896 -1.2116 0.0001 9 6 1.3106 -2.4223 0.0005 10 6 -0.0803 -2.5906 0.0005 11 7 -0.3384 -3.8871 0.0011 12 6 0.7980 -4.5769 0.0009 13 6 1.0811 -5.9546 0.0008 14 35 -0.3166 -7.2283 0.0003 15 6 2.3882 -6.3525 0.0001 16 7 3.3703 -5.4492 -0.0011 17 6 3.1262 -4.1659 -0.0010 18 7 1.8533 -3.6948 0.0059 19 1 -0.4850 0.8400 0.0004 20 1 -0.8145 -1.7985 0.0009 21 1 2.6282 -7.4055 -0.0004 22 1 3.9508 -3.4684 -0.0016 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216983945.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:53 Heat of formation + Delta-G solvation = 85.342248 kcal Electronic energy + Delta-G solvation = -12467.696940 eV Core-core repulsion = 10069.935830 eV Total energy + Delta-G solvation = -2397.761110 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 266.970 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.37016 -37.28699 -34.11167 -33.03150 -31.12230 -29.19499 -28.43406 -25.54189 -23.01844 -21.87003 -20.55720 -18.13803 -16.57729 -16.23866 -15.28536 -14.94075 -14.52787 -13.98590 -13.23508 -12.43674 -12.08846 -12.03788 -11.46777 -11.39817 -11.17065 -11.13054 -10.54620 -9.93742 -9.79084 -9.50504 -9.38224 -8.75165 -7.97699 -7.26578 -7.08379 -4.56318 1.29211 2.11832 2.26453 2.89178 2.89649 2.93949 3.57574 3.84109 3.93479 4.55748 4.84024 4.95814 5.19733 5.59502 6.03981 6.30100 6.52858 6.66932 6.97860 7.15082 7.54314 7.88812 8.15558 8.29943 8.47086 8.64952 9.28527 9.86034 Molecular weight = 266.97amu Principal moments of inertia in cm(-1) A = 0.046644 B = 0.006332 C = 0.005586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.151149 B = 4420.970760 C = 5011.278935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.071 3.929 3 Si 0.937 3.063 4 H -0.266 1.266 5 H -0.272 1.272 6 H -0.260 1.260 7 C -0.422 4.422 8 H 0.083 0.917 9 C 0.174 3.826 10 C -0.059 4.059 11 N -0.444 5.444 12 C 0.092 3.908 13 C -0.052 4.052 14 Br -0.042 7.042 15 C 0.026 3.974 16 N -0.513 5.513 17 C 0.337 3.663 18 N -0.440 5.440 19 H 0.289 0.711 20 H 0.204 0.796 21 H 0.155 0.845 22 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.211 -5.047 -0.016 5.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.149 4.149 3 Si 0.761 3.239 4 H -0.191 1.191 5 H -0.197 1.197 6 H -0.184 1.184 7 C -0.457 4.457 8 H 0.102 0.898 9 C 0.063 3.937 10 C -0.215 4.215 11 N -0.163 5.163 12 C -0.142 4.142 13 C -0.136 4.136 14 Br 0.042 6.958 15 C -0.114 4.114 16 N -0.229 5.229 17 C 0.055 3.945 18 N -0.131 5.131 19 H 0.100 0.900 20 H 0.220 0.780 21 H 0.172 0.828 22 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 1.425 -6.255 -0.003 6.415 hybrid contribution 0.670 1.607 -0.005 1.741 sum 2.096 -4.648 -0.009 5.099 Atomic orbital electron populations 1.69552 1.07545 1.29935 1.34356 1.25811 0.95088 1.01505 0.92470 0.85811 0.79825 0.78789 0.79487 1.19088 1.19716 1.18416 1.18496 0.94715 0.88011 1.44490 0.89849 1.19296 0.93139 0.81293 0.99969 1.24023 0.93813 0.91226 1.12389 1.69851 1.24362 1.06180 1.15889 1.19396 0.84202 0.89623 1.21010 1.21285 0.93171 0.90122 1.09061 1.96529 1.49102 1.52590 1.97558 1.21684 0.86221 0.98798 1.04648 1.68123 1.33973 0.99786 1.21066 1.24329 0.86089 0.92098 0.92005 1.43823 1.06263 1.08935 1.54067 0.89956 0.78003 0.82786 0.79309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.17 10.31 55.55 0.57 -17.60 14 2 C 0.07 1.57 5.50 -17.28 -0.09 1.48 14 3 Si 0.94 16.55 29.56 -169.99 -5.03 11.52 14 4 H -0.27 -4.67 7.11 56.52 0.40 -4.26 14 5 H -0.27 -4.74 7.11 56.52 0.40 -4.33 14 6 H -0.26 -4.52 7.11 56.52 0.40 -4.12 14 7 C -0.42 -9.92 9.29 -38.37 -0.36 -10.27 14 8 H 0.08 1.78 7.85 -52.48 -0.41 1.37 14 9 C 0.17 4.39 6.81 -83.64 -0.57 3.82 14 10 C -0.06 -1.55 10.84 -16.70 -0.18 -1.73 14 11 N -0.44 -11.67 11.22 -11.73 -0.13 -11.80 14 12 C 0.09 2.28 7.63 -155.39 -1.19 1.09 14 13 C -0.05 -1.10 6.26 -39.26 -0.25 -1.35 14 14 Br -0.04 -0.76 33.76 -68.01 -2.30 -3.05 14 15 C 0.03 0.50 10.94 -17.44 -0.19 0.31 14 16 N -0.51 -10.12 10.37 -14.16 -0.15 -10.26 14 17 C 0.34 6.81 12.11 -89.63 -1.09 5.72 14 18 N -0.44 -10.48 2.99 -61.29 -0.18 -10.66 14 19 H 0.29 5.98 8.30 -40.82 -0.34 5.64 14 20 H 0.20 5.32 5.72 -52.49 -0.30 5.02 14 21 H 0.15 2.50 8.06 -52.49 -0.42 2.08 14 22 H 0.19 3.11 8.06 -52.49 -0.42 2.69 14 LS Contribution 226.89 15.07 3.42 3.42 Total: -1.00 -26.90 226.89 -8.39 -35.29 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -0.69 Total: 4.09 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: -3.91 Total: -0.94 kcal Atomic # 7 Polarization: -50.44 SS G_CDS: 0.11 Total: -50.33 kcal Atomic # 14 Polarization: 16.55 SS G_CDS: -5.03 Total: 11.52 kcal Atomic # 35 Polarization: -0.76 SS G_CDS: -2.30 Total: -3.05 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -26.90 -8.39 -35.29 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216983945.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.635 kcal (2) G-P(sol) polarization free energy of solvation -26.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds