Wall clock time and date at job start Mon Mar 30 2020 05:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30952 * 1 3 3 Si 1.86797 * 120.00136 * 2 1 4 4 H 1.48498 * 109.47356 * 90.00257 * 3 2 1 5 5 H 1.48506 * 109.46763 * 210.00113 * 3 2 1 6 6 H 1.48501 * 109.46907 * 329.99936 * 3 2 1 7 7 C 1.39770 * 119.99697 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99710 * 11.78362 * 7 2 1 9 9 C 1.41196 * 119.99875 * 191.77594 * 7 2 1 10 10 C 1.39390 * 126.17741 * 188.24638 * 9 7 2 11 11 N 1.36120 * 106.63982 * 179.97438 * 10 9 7 12 12 C 1.36751 * 132.18525 * 179.97438 * 11 10 9 13 13 C 1.35629 * 119.10486 * 180.02562 * 12 11 10 14 14 Br 1.89097 * 120.34781 * 179.97438 * 13 12 11 15 15 C 1.40268 * 119.30578 * 359.95713 * 13 12 11 16 16 N 1.31269 * 120.42763 * 0.04242 * 15 13 12 17 17 C 1.34212 * 121.02524 * 359.97438 * 16 15 13 18 18 N 1.32405 * 131.22719 * 180.33543 * 17 16 15 19 19 H 0.97004 * 120.00398 * 174.74155 * 1 2 3 20 20 H 1.08007 * 126.67911 * 359.97438 * 10 9 7 21 21 H 1.08007 * 120.44575 * 359.97438 * 12 11 10 22 22 H 1.08000 * 119.78684 * 180.02562 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3095 0.0000 0.0000 3 14 2.2435 1.6177 0.0000 4 1 2.4911 2.0464 1.4000 5 1 3.5411 1.4400 -0.7001 6 1 1.4410 2.6526 -0.7001 7 6 2.0083 -1.2105 0.0005 8 1 1.4853 -2.1359 -0.1900 9 6 3.3980 -1.2233 0.2501 10 6 4.2464 -2.3221 0.1244 11 7 5.4935 -1.8920 0.4603 12 6 6.7010 -2.5313 0.5172 13 6 7.8003 -1.8325 0.8951 14 35 9.4874 -2.6817 0.9866 15 6 7.6727 -0.4733 1.2169 16 7 6.5022 0.1177 1.1544 17 6 5.4045 -0.5592 0.7828 18 7 4.1455 -0.1727 0.6461 19 1 -0.4851 -0.8365 -0.0770 20 1 3.9685 -3.3203 -0.1802 21 1 6.7781 -3.5788 0.2655 22 1 8.5430 0.0907 1.5184 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216983977.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:28 Heat of formation + Delta-G solvation = 90.106048 kcal Electronic energy + Delta-G solvation = -12374.792871 eV Core-core repulsion = 9977.238334 eV Total energy + Delta-G solvation = -2397.554536 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 266.970 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.89313 -37.48077 -34.17490 -33.55536 -31.90947 -29.26035 -28.38097 -26.13831 -23.30382 -22.33101 -20.22578 -18.58028 -17.48585 -16.52791 -15.60275 -15.49470 -13.94291 -13.91033 -13.45055 -12.87014 -12.48467 -12.31392 -12.21753 -11.51611 -11.07145 -10.67916 -10.49435 -10.05640 -9.84335 -9.51740 -9.23666 -8.51083 -8.18558 -7.45909 -7.31701 -4.78263 1.00230 1.56477 1.58295 3.21081 3.31640 3.53565 3.80256 3.93844 4.24467 4.26942 4.39967 4.71709 5.03801 5.13666 5.52950 5.64714 6.09722 6.46633 6.60912 6.94457 7.23649 7.37961 7.95037 8.06441 8.30401 8.47569 8.97578 9.91571 Molecular weight = 266.97amu Principal moments of inertia in cm(-1) A = 0.065749 B = 0.005526 C = 0.005129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.758195 B = 5066.021834 C = 5457.348388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.050 3.950 3 Si 1.109 2.891 4 H -0.277 1.277 5 H -0.259 1.259 6 H -0.311 1.311 7 C -0.460 4.460 8 H 0.089 0.911 9 C 0.230 3.770 10 C -0.238 4.238 11 N -0.354 5.354 12 C 0.114 3.886 13 C -0.216 4.216 14 Br -0.036 7.036 15 C 0.156 3.844 16 N -0.450 5.450 17 C 0.392 3.608 18 N -0.522 5.522 19 H 0.285 0.715 20 H 0.167 0.833 21 H 0.164 0.836 22 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.869 -6.120 0.785 17.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.172 4.172 3 Si 0.937 3.063 4 H -0.203 1.203 5 H -0.185 1.185 6 H -0.241 1.241 7 C -0.493 4.493 8 H 0.107 0.893 9 C 0.107 3.893 10 C -0.369 4.369 11 N -0.030 5.030 12 C -0.026 4.026 13 C -0.304 4.304 14 Br 0.046 6.954 15 C -0.026 4.026 16 N -0.165 5.165 17 C 0.045 3.955 18 N -0.254 5.254 19 H 0.097 0.903 20 H 0.185 0.815 21 H 0.181 0.819 22 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 15.462 -3.191 1.180 15.831 hybrid contribution 0.163 -3.557 -0.390 3.582 sum 15.625 -6.748 0.790 17.038 Atomic orbital electron populations 1.70687 1.07890 1.32991 1.30894 1.27488 0.95359 1.05445 0.88905 0.82830 0.73757 0.70559 0.79125 1.20335 1.18480 1.24057 1.20000 0.89897 0.97039 1.42353 0.89271 1.18704 0.93559 0.85902 0.91143 1.22613 0.81122 1.02554 1.30643 1.43616 1.06889 1.12334 1.40122 1.21622 0.82946 0.98609 0.99440 1.21602 0.92210 0.97560 1.19059 1.96607 1.20989 1.79612 1.98156 1.22744 0.94809 0.89757 0.95247 1.67935 0.96485 1.34449 1.17663 1.22163 0.93653 0.78248 1.01456 1.70485 0.97894 1.28355 1.28702 0.90331 0.81529 0.81864 0.81261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.39 13.66 55.54 0.76 -20.63 14 2 C 0.05 1.33 5.51 -17.35 -0.10 1.24 14 3 Si 1.11 27.48 26.35 -169.99 -4.48 23.00 14 4 H -0.28 -6.98 7.11 56.52 0.40 -6.58 14 5 H -0.26 -6.62 6.26 56.52 0.35 -6.27 14 6 H -0.31 -7.39 7.11 56.52 0.40 -6.99 14 7 C -0.46 -12.16 9.78 -37.89 -0.37 -12.53 14 8 H 0.09 2.30 8.06 -52.49 -0.42 1.87 14 9 C 0.23 5.93 6.34 -84.97 -0.54 5.39 14 10 C -0.24 -5.34 11.81 -15.22 -0.18 -5.52 14 11 N -0.35 -7.52 2.93 -63.23 -0.19 -7.70 14 12 C 0.11 1.89 10.78 -16.29 -0.18 1.71 14 13 C -0.22 -3.29 6.21 -39.75 -0.25 -3.54 14 14 Br -0.04 -0.42 33.72 -68.01 -2.29 -2.71 14 15 C 0.16 2.59 11.04 -17.03 -0.19 2.40 14 16 N -0.45 -9.63 10.48 -13.60 -0.14 -9.77 14 17 C 0.39 9.39 8.88 -322.10 -2.86 6.53 14 18 N -0.52 -13.87 6.53 -12.00 -0.08 -13.95 14 19 H 0.29 7.21 8.73 -40.82 -0.36 6.85 14 20 H 0.17 3.22 8.06 -52.48 -0.42 2.80 14 21 H 0.16 2.16 8.06 -52.48 -0.42 1.74 14 22 H 0.17 2.15 8.06 -52.49 -0.42 1.73 14 LS Contribution 225.46 15.07 3.40 3.40 Total: -1.00 -28.96 225.46 -8.57 -37.53 By element: Atomic # 1 Polarization: -3.95 SS G_CDS: -0.89 Total: -4.84 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -4.66 Total: -4.32 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: 0.35 Total: -52.05 kcal Atomic # 14 Polarization: 27.48 SS G_CDS: -4.48 Total: 23.00 kcal Atomic # 35 Polarization: -0.42 SS G_CDS: -2.29 Total: -2.71 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -28.96 -8.57 -37.53 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216983977.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.639 kcal (2) G-P(sol) polarization free energy of solvation -28.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds