Wall clock time and date at job start Mon Mar 30 2020 05:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30952 * 1 3 3 Si 1.86797 * 120.00136 * 2 1 4 4 H 1.48498 * 109.47356 * 90.00257 * 3 2 1 5 5 H 1.48506 * 109.46763 * 210.00113 * 3 2 1 6 6 H 1.48501 * 109.46907 * 329.99936 * 3 2 1 7 7 C 1.39770 * 119.99697 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99710 * 11.78362 * 7 2 1 9 9 C 1.41196 * 119.99875 * 191.77594 * 7 2 1 10 10 C 1.39390 * 126.17741 * 188.24638 * 9 7 2 11 11 N 1.36120 * 106.63982 * 179.97438 * 10 9 7 12 12 C 1.36751 * 132.18525 * 179.97438 * 11 10 9 13 13 C 1.35629 * 119.10486 * 180.02562 * 12 11 10 14 14 Br 1.89097 * 120.34781 * 179.97438 * 13 12 11 15 15 C 1.40268 * 119.30578 * 359.95713 * 13 12 11 16 16 N 1.31269 * 120.42763 * 0.04242 * 15 13 12 17 17 C 1.34212 * 121.02524 * 359.97438 * 16 15 13 18 18 N 1.32405 * 131.22719 * 180.33543 * 17 16 15 19 19 H 0.97004 * 120.00398 * 174.74155 * 1 2 3 20 20 H 1.08007 * 126.67911 * 359.97438 * 10 9 7 21 21 H 1.08007 * 120.44575 * 359.97438 * 12 11 10 22 22 H 1.08000 * 119.78684 * 180.02562 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3095 0.0000 0.0000 3 14 2.2435 1.6177 0.0000 4 1 2.4911 2.0464 1.4000 5 1 3.5411 1.4400 -0.7001 6 1 1.4410 2.6526 -0.7001 7 6 2.0083 -1.2105 0.0005 8 1 1.4853 -2.1359 -0.1900 9 6 3.3980 -1.2233 0.2501 10 6 4.2464 -2.3221 0.1244 11 7 5.4935 -1.8920 0.4603 12 6 6.7010 -2.5313 0.5172 13 6 7.8003 -1.8325 0.8951 14 35 9.4874 -2.6817 0.9866 15 6 7.6727 -0.4733 1.2169 16 7 6.5022 0.1177 1.1544 17 6 5.4045 -0.5592 0.7828 18 7 4.1455 -0.1727 0.6461 19 1 -0.4851 -0.8365 -0.0770 20 1 3.9685 -3.3203 -0.1802 21 1 6.7781 -3.5788 0.2655 22 1 8.5430 0.0907 1.5184 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216983977.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:28 Heat of formation + Delta-G solvation = 74.132608 kcal Electronic energy + Delta-G solvation = -12375.485531 eV Core-core repulsion = 9977.238334 eV Total energy + Delta-G solvation = -2398.247197 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 266.970 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.54705 -39.10282 -35.90550 -35.27502 -33.36886 -30.85869 -29.94666 -27.80629 -24.90651 -23.94889 -22.01776 -20.40030 -19.11052 -18.15385 -17.15587 -17.03671 -15.83127 -15.50524 -15.07458 -14.48825 -14.24619 -13.90930 -13.81942 -13.19256 -12.84077 -12.44698 -11.77766 -11.67125 -11.58876 -11.14978 -11.00190 -10.28356 -9.84150 -9.37399 -9.05744 -6.69636 -0.43238 0.04683 0.29446 1.39474 1.49168 1.70916 1.95314 1.99114 2.37190 2.53993 2.79179 3.21233 3.41904 3.54655 4.00997 4.17877 4.63163 4.83799 4.92943 5.26263 5.45200 5.61830 6.07905 6.26779 6.60721 6.70559 7.21715 8.00348 Molecular weight = 266.97amu Principal moments of inertia in cm(-1) A = 0.065749 B = 0.005526 C = 0.005129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.758195 B = 5066.021834 C = 5457.348388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.025 3.975 3 Si 1.145 2.855 4 H -0.290 1.290 5 H -0.275 1.275 6 H -0.301 1.301 7 C -0.501 4.501 8 H 0.080 0.920 9 C 0.203 3.797 10 C -0.231 4.231 11 N -0.369 5.369 12 C 0.135 3.865 13 C -0.208 4.208 14 Br 0.019 6.981 15 C 0.182 3.818 16 N -0.479 5.479 17 C 0.366 3.634 18 N -0.562 5.562 19 H 0.283 0.717 20 H 0.195 0.805 21 H 0.206 0.794 22 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.382 -7.534 1.137 21.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.192 4.192 3 Si 0.974 3.026 4 H -0.217 1.217 5 H -0.201 1.201 6 H -0.230 1.230 7 C -0.535 4.535 8 H 0.098 0.902 9 C 0.079 3.921 10 C -0.359 4.359 11 N -0.046 5.046 12 C -0.003 4.003 13 C -0.295 4.295 14 Br 0.101 6.899 15 C -0.002 4.002 16 N -0.194 5.194 17 C 0.018 3.982 18 N -0.294 5.294 19 H 0.094 0.906 20 H 0.212 0.788 21 H 0.223 0.777 22 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 19.983 -4.640 1.520 20.571 hybrid contribution -0.403 -3.313 -0.378 3.358 sum 19.580 -7.952 1.142 21.164 Atomic orbital electron populations 1.70693 1.08021 1.32813 1.34646 1.27898 0.95676 1.06693 0.88884 0.82303 0.72556 0.69763 0.77988 1.21708 1.20144 1.23028 1.19864 0.90824 0.96603 1.46247 0.90240 1.18861 0.93765 0.87297 0.92170 1.22837 0.81131 1.02649 1.29310 1.43582 1.07864 1.11761 1.41396 1.22563 0.81465 1.00374 0.95856 1.22054 0.94280 0.97444 1.15734 1.96724 1.16768 1.78488 1.97879 1.23691 0.94435 0.90687 0.91375 1.68015 0.97209 1.35480 1.18736 1.22187 0.93666 0.79659 1.02643 1.70256 0.99691 1.29734 1.29752 0.90590 0.78797 0.77720 0.76835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -47.23 13.66 21.80 0.30 -46.93 14 2 C 0.03 1.42 5.51 85.19 0.47 1.89 14 3 Si 1.15 58.99 26.35 68.60 1.81 60.80 14 4 H -0.29 -15.21 7.11 99.48 0.71 -14.51 14 5 H -0.27 -14.62 6.26 99.48 0.62 -14.00 14 6 H -0.30 -14.57 7.11 99.48 0.71 -13.87 14 7 C -0.50 -28.02 9.78 23.37 0.23 -27.80 14 8 H 0.08 4.38 8.06 -2.91 -0.02 4.36 14 9 C 0.20 10.78 6.34 39.68 0.25 11.03 14 10 C -0.23 -10.15 11.81 84.31 1.00 -9.15 14 11 N -0.37 -14.82 2.93 -353.95 -1.04 -15.85 14 12 C 0.13 3.82 10.78 83.32 0.90 4.72 14 13 C -0.21 -5.18 6.21 22.16 0.14 -5.04 14 14 Br 0.02 0.32 33.72 -20.37 -0.69 -0.37 14 15 C 0.18 5.13 11.04 85.27 0.94 6.07 14 16 N -0.48 -19.33 10.48 -196.94 -2.06 -21.40 14 17 C 0.37 17.17 8.88 261.24 2.32 19.49 14 18 N -0.56 -30.47 6.53 -191.87 -1.25 -31.72 14 19 H 0.28 15.31 8.73 -92.71 -0.81 14.50 14 20 H 0.20 7.17 8.06 -2.91 -0.02 7.15 14 21 H 0.21 4.09 8.06 -2.91 -0.02 4.06 14 22 H 0.22 4.06 8.06 -2.91 -0.02 4.04 14 Total: -1.00 -66.97 225.46 4.44 -62.53 By element: Atomic # 1 Polarization: -9.40 SS G_CDS: 1.13 Total: -8.26 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: 6.24 Total: 1.20 kcal Atomic # 7 Polarization: -111.84 SS G_CDS: -4.06 Total: -115.90 kcal Atomic # 14 Polarization: 58.99 SS G_CDS: 1.81 Total: 60.80 kcal Atomic # 35 Polarization: 0.32 SS G_CDS: -0.69 Total: -0.37 kcal Total: -66.97 4.44 -62.53 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216983977.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.660 kcal (2) G-P(sol) polarization free energy of solvation -66.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds