Wall clock time and date at job start Mon Mar 30 2020 05:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30943 * 1 3 3 Si 1.86792 * 120.00144 * 2 1 4 4 H 1.48501 * 109.47473 * 269.99986 * 3 2 1 5 5 H 1.48498 * 109.47273 * 30.00535 * 3 2 1 6 6 H 1.48507 * 109.47433 * 150.00199 * 3 2 1 7 7 C 1.39798 * 119.99864 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99720 * 179.97438 * 7 2 1 9 9 C 1.41170 * 120.00218 * 0.02562 * 7 2 1 10 10 N 1.34754 * 126.20006 * 0.02562 * 9 7 2 11 11 C 1.32369 * 109.00615 * 179.97438 * 10 9 7 12 12 C 1.41037 * 132.07334 * 180.02562 * 11 10 9 13 13 C 1.36101 * 119.18589 * 179.97438 * 12 11 10 14 14 C 1.40194 * 120.17636 * 359.97438 * 13 12 11 15 15 N 1.30573 * 120.95603 * 0.04152 * 14 13 12 16 16 N 1.37534 * 108.89539 * 359.97438 * 11 10 9 17 17 C 1.35250 * 107.68609 * 0.02562 * 16 11 10 18 18 Br 1.89109 * 126.59004 * 179.97438 * 17 16 11 19 19 H 0.96996 * 119.99563 * 359.97438 * 1 2 3 20 20 H 1.08004 * 120.40209 * 359.97438 * 12 11 10 21 21 H 1.08008 * 119.91421 * 179.97438 * 13 12 11 22 22 H 1.08001 * 119.52633 * 179.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3094 0.0000 0.0000 3 14 2.2434 1.6176 0.0000 4 1 2.4910 2.0464 -1.4001 5 1 1.4410 2.6526 0.7001 6 1 3.5411 1.4401 0.7000 7 6 2.0084 -1.2107 -0.0005 8 1 3.0884 -1.2107 -0.0010 9 6 1.3026 -2.4333 -0.0016 10 7 -0.0371 -2.5788 -0.0027 11 6 -0.3305 -3.8696 -0.0041 12 6 -1.5608 -4.5591 -0.0061 13 6 -1.5589 -5.9201 -0.0077 14 6 -0.3459 -6.6231 -0.0079 15 7 0.7967 -5.9911 -0.0058 16 7 0.8397 -4.5923 -0.0045 17 6 1.8664 -3.7119 -0.0027 18 35 3.7105 -4.1308 -0.0017 19 1 -0.4849 0.8400 0.0004 20 1 -2.4930 -4.0137 -0.0063 21 1 -2.4943 -6.4601 -0.0088 22 1 -0.3566 -7.7030 -0.0088 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216984115.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:04 Heat of formation + Delta-G solvation = 113.528245 kcal Electronic energy + Delta-G solvation = -12436.242226 eV Core-core repulsion = 10039.703352 eV Total energy + Delta-G solvation = -2396.538874 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 266.970 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.96159 -36.90828 -33.54119 -32.65147 -30.39565 -30.01179 -27.76328 -26.02334 -22.77716 -21.84250 -20.17029 -17.60200 -16.62168 -16.23204 -14.97466 -14.89345 -14.82429 -13.08158 -12.92290 -12.76933 -12.18892 -11.83149 -11.35393 -11.21132 -10.70785 -10.51335 -10.32377 -10.03449 -9.68062 -9.44969 -9.42358 -8.34376 -8.03702 -7.04330 -6.62969 -4.47729 1.25524 2.13863 2.46502 3.02529 3.10363 3.13797 3.19754 3.81277 3.96109 4.40523 5.08923 5.20660 5.34384 5.38130 5.62860 6.21342 6.48611 6.60139 6.84013 6.95893 7.16599 7.38967 8.13715 8.52248 8.52488 8.82228 9.41363 10.28011 Molecular weight = 266.97amu Principal moments of inertia in cm(-1) A = 0.021026 B = 0.010457 C = 0.007001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.340579 B = 2677.103334 C = 3998.601892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.742 5.742 2 C 0.071 3.929 3 Si 0.914 3.086 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.259 1.259 7 C -0.418 4.418 8 H 0.095 0.905 9 C 0.259 3.741 10 N -0.450 5.450 11 C 0.166 3.834 12 C -0.023 4.023 13 C -0.206 4.206 14 C 0.080 3.920 15 N -0.278 5.278 16 N -0.242 5.242 17 C -0.140 4.140 18 Br -0.019 7.019 19 H 0.277 0.723 20 H 0.145 0.855 21 H 0.136 0.864 22 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.684 -6.648 -0.007 6.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.365 5.365 2 C -0.152 4.152 3 Si 0.738 3.262 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.183 1.183 7 C -0.451 4.451 8 H 0.113 0.887 9 C 0.129 3.871 10 N -0.178 5.178 11 C -0.077 4.077 12 C -0.052 4.052 13 C -0.232 4.232 14 C -0.109 4.109 15 N -0.092 5.092 16 N -0.020 5.020 17 C -0.336 4.336 18 Br 0.063 6.937 19 H 0.088 0.912 20 H 0.163 0.837 21 H 0.154 0.846 22 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 1.589 -6.307 -0.001 6.504 hybrid contribution -0.426 0.185 -0.009 0.464 sum 1.164 -6.121 -0.010 6.231 Atomic orbital electron populations 1.70056 1.07142 1.28493 1.30762 1.25966 0.94952 1.01138 0.93179 0.86200 0.80399 0.80257 0.79304 1.19316 1.20152 1.18290 1.18854 0.94475 0.87483 1.44331 0.88696 1.18345 0.87181 0.89255 0.92324 1.71808 1.13562 1.08257 1.24144 1.21764 0.87224 0.89811 1.08929 1.20369 0.95411 0.93308 0.96105 1.21104 0.98810 0.94219 1.09104 1.23467 0.88704 1.00415 0.98339 1.75252 1.25990 0.89042 1.18916 1.46013 1.07559 1.01916 1.46553 1.22383 0.84244 0.89274 1.37655 1.96316 1.04082 1.94726 1.98580 0.91229 0.83683 0.84622 0.80564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -19.72 11.93 55.54 0.66 -19.05 14 2 C 0.07 1.81 5.49 -17.35 -0.10 1.71 14 3 Si 0.91 18.63 29.56 -169.99 -5.02 13.60 14 4 H -0.27 -5.38 7.11 56.52 0.40 -4.98 14 5 H -0.28 -5.50 7.11 56.52 0.40 -5.10 14 6 H -0.26 -5.18 7.11 56.52 0.40 -4.77 14 7 C -0.42 -11.17 9.19 -37.89 -0.35 -11.52 14 8 H 0.10 2.39 7.62 -52.49 -0.40 1.99 14 9 C 0.26 7.18 6.67 -84.91 -0.57 6.62 14 10 N -0.45 -12.52 9.53 -10.26 -0.10 -12.61 14 11 C 0.17 4.08 7.85 -155.73 -1.22 2.86 14 12 C -0.02 -0.44 10.12 -39.29 -0.40 -0.84 14 13 C -0.21 -3.17 10.03 -39.62 -0.40 -3.57 14 14 C 0.08 1.29 11.30 -17.35 -0.20 1.10 14 15 N -0.28 -5.84 11.91 30.65 0.37 -5.47 14 16 N -0.24 -5.93 3.97 -9.67 -0.04 -5.97 14 17 C -0.14 -3.59 7.81 -15.48 -0.12 -3.71 14 18 Br -0.02 -0.41 33.70 -68.01 -2.29 -2.70 14 19 H 0.28 6.66 8.30 -40.82 -0.34 6.32 14 20 H 0.15 2.41 8.06 -52.48 -0.42 1.98 14 21 H 0.14 1.48 8.06 -52.48 -0.42 1.06 14 22 H 0.18 1.97 8.06 -52.49 -0.42 1.55 14 LS Contribution 230.47 15.07 3.47 3.47 Total: -1.00 -30.94 230.47 -7.10 -38.04 By element: Atomic # 1 Polarization: -1.14 SS G_CDS: -0.80 Total: -1.94 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -3.34 Total: -7.35 kcal Atomic # 7 Polarization: -44.01 SS G_CDS: 0.89 Total: -43.11 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.02 Total: 13.60 kcal Atomic # 35 Polarization: -0.41 SS G_CDS: -2.29 Total: -2.70 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -30.94 -7.10 -38.04 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216984115.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.565 kcal (2) G-P(sol) polarization free energy of solvation -30.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds