Wall clock time and date at job start Mon Mar 30 2020 05:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30943 * 1 3 3 Si 1.86792 * 120.00144 * 2 1 4 4 H 1.48501 * 109.47473 * 269.99986 * 3 2 1 5 5 H 1.48498 * 109.47273 * 30.00535 * 3 2 1 6 6 H 1.48507 * 109.47433 * 150.00199 * 3 2 1 7 7 C 1.39798 * 119.99864 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99720 * 179.97438 * 7 2 1 9 9 C 1.41170 * 120.00218 * 0.02562 * 7 2 1 10 10 N 1.34754 * 126.20006 * 0.02562 * 9 7 2 11 11 C 1.32369 * 109.00615 * 179.97438 * 10 9 7 12 12 C 1.41037 * 132.07334 * 180.02562 * 11 10 9 13 13 C 1.36101 * 119.18589 * 179.97438 * 12 11 10 14 14 C 1.40194 * 120.17636 * 359.97438 * 13 12 11 15 15 N 1.30573 * 120.95603 * 0.04152 * 14 13 12 16 16 N 1.37534 * 108.89539 * 359.97438 * 11 10 9 17 17 C 1.35250 * 107.68609 * 0.02562 * 16 11 10 18 18 Br 1.89109 * 126.59004 * 179.97438 * 17 16 11 19 19 H 0.96996 * 119.99563 * 359.97438 * 1 2 3 20 20 H 1.08004 * 120.40209 * 359.97438 * 12 11 10 21 21 H 1.08008 * 119.91421 * 179.97438 * 13 12 11 22 22 H 1.08001 * 119.52633 * 179.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3094 0.0000 0.0000 3 14 2.2434 1.6176 0.0000 4 1 2.4910 2.0464 -1.4001 5 1 1.4410 2.6526 0.7001 6 1 3.5411 1.4401 0.7000 7 6 2.0084 -1.2107 -0.0005 8 1 3.0884 -1.2107 -0.0010 9 6 1.3026 -2.4333 -0.0016 10 7 -0.0371 -2.5788 -0.0027 11 6 -0.3305 -3.8696 -0.0041 12 6 -1.5608 -4.5591 -0.0061 13 6 -1.5589 -5.9201 -0.0077 14 6 -0.3459 -6.6231 -0.0079 15 7 0.7967 -5.9911 -0.0058 16 7 0.8397 -4.5923 -0.0045 17 6 1.8664 -3.7119 -0.0027 18 35 3.7105 -4.1308 -0.0017 19 1 -0.4849 0.8400 0.0004 20 1 -2.4930 -4.0137 -0.0063 21 1 -2.4943 -6.4601 -0.0088 22 1 -0.3566 -7.7030 -0.0088 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216984115.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:04 Heat of formation + Delta-G solvation = 92.902051 kcal Electronic energy + Delta-G solvation = -12437.136645 eV Core-core repulsion = 10039.703352 eV Total energy + Delta-G solvation = -2397.433293 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 266.970 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.65621 -38.50964 -35.34159 -34.26201 -32.11862 -31.71997 -29.54553 -27.72036 -24.42429 -23.45886 -21.95648 -19.37784 -18.19471 -17.90978 -16.61374 -16.51435 -16.39672 -14.73379 -14.55650 -14.38813 -13.63276 -13.48860 -13.06770 -12.82264 -12.52564 -12.19786 -11.95409 -11.64825 -11.31812 -11.19587 -11.10993 -10.16129 -9.84457 -8.79704 -8.45204 -6.40600 -0.19830 0.57383 0.71407 1.42643 1.43085 1.53828 1.59724 2.13268 2.27817 2.70107 3.47308 3.63472 3.78065 3.94824 4.37155 4.74840 5.07441 5.15118 5.16766 5.21177 5.37965 5.76868 6.25988 6.67338 6.81924 7.05693 7.58191 8.49274 Molecular weight = 266.97amu Principal moments of inertia in cm(-1) A = 0.021026 B = 0.010457 C = 0.007001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.340579 B = 2677.103334 C = 3998.601892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.028 3.972 3 Si 0.990 3.010 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.254 1.254 7 C -0.459 4.459 8 H 0.095 0.905 9 C 0.226 3.774 10 N -0.497 5.497 11 C 0.146 3.854 12 C -0.046 4.046 13 C -0.160 4.160 14 C 0.103 3.897 15 N -0.308 5.308 16 N -0.261 5.261 17 C -0.177 4.177 18 Br 0.004 6.996 19 H 0.281 0.719 20 H 0.166 0.834 21 H 0.201 0.799 22 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.590 -9.042 -0.008 9.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.191 4.191 3 Si 0.809 3.191 4 H -0.186 1.186 5 H -0.192 1.192 6 H -0.178 1.178 7 C -0.493 4.493 8 H 0.113 0.887 9 C 0.096 3.904 10 N -0.225 5.225 11 C -0.100 4.100 12 C -0.074 4.074 13 C -0.186 4.186 14 C -0.087 4.087 15 N -0.121 5.121 16 N -0.038 5.038 17 C -0.370 4.370 18 Br 0.086 6.914 19 H 0.091 0.909 20 H 0.183 0.817 21 H 0.218 0.782 22 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 0.356 -8.713 -0.002 8.720 hybrid contribution -0.275 0.418 -0.011 0.501 sum 0.080 -8.295 -0.013 8.295 Atomic orbital electron populations 1.70160 1.08761 1.29501 1.32730 1.26882 0.95739 1.04406 0.92050 0.85095 0.78986 0.75462 0.79517 1.18643 1.19209 1.17760 1.19100 0.94639 0.88511 1.47020 0.88747 1.18734 0.87833 0.90601 0.93264 1.71645 1.14155 1.10752 1.25946 1.22528 0.89255 0.89573 1.08653 1.20895 0.94210 0.95158 0.97187 1.21874 1.01117 0.92628 1.02959 1.24782 0.87688 1.03088 0.93143 1.75329 1.28908 0.87408 1.20438 1.46012 1.06918 1.03121 1.47711 1.22475 0.85856 0.89354 1.39328 1.96239 1.02072 1.94457 1.98668 0.90874 0.81690 0.78208 0.74349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -44.02 11.93 21.80 0.26 -43.76 14 2 C 0.03 1.49 5.49 85.20 0.47 1.96 14 3 Si 0.99 39.65 29.56 68.60 2.03 41.68 14 4 H -0.26 -10.09 7.11 99.48 0.71 -9.38 14 5 H -0.27 -10.17 7.11 99.48 0.71 -9.46 14 6 H -0.25 -9.81 7.11 99.48 0.71 -9.10 14 7 C -0.46 -25.98 9.19 23.37 0.21 -25.77 14 8 H 0.09 5.06 7.62 -2.91 -0.02 5.04 14 9 C 0.23 13.23 6.67 39.78 0.27 13.50 14 10 N -0.50 -28.92 9.53 -186.37 -1.78 -30.69 14 11 C 0.15 7.21 7.85 134.04 1.05 8.27 14 12 C -0.05 -1.63 10.12 22.46 0.23 -1.40 14 13 C -0.16 -3.93 10.03 22.25 0.22 -3.71 14 14 C 0.10 2.74 11.30 85.36 0.96 3.70 14 15 N -0.31 -12.15 11.91 -56.95 -0.68 -12.83 14 16 N -0.26 -12.82 3.97 -184.49 -0.73 -13.55 14 17 C -0.18 -9.43 7.81 84.53 0.66 -8.77 14 18 Br 0.00 0.16 33.70 -20.37 -0.69 -0.52 14 19 H 0.28 14.17 8.30 -92.71 -0.77 13.40 14 20 H 0.17 5.05 8.06 -2.91 -0.02 5.03 14 21 H 0.20 2.50 8.06 -2.91 -0.02 2.47 14 22 H 0.24 3.30 8.06 -2.91 -0.02 3.27 14 Total: -1.00 -74.38 230.47 3.75 -70.63 By element: Atomic # 1 Polarization: 0.01 SS G_CDS: 1.26 Total: 1.27 kcal Atomic # 6 Polarization: -16.30 SS G_CDS: 4.07 Total: -12.22 kcal Atomic # 7 Polarization: -97.91 SS G_CDS: -2.93 Total: -100.84 kcal Atomic # 14 Polarization: 39.65 SS G_CDS: 2.03 Total: 41.68 kcal Atomic # 35 Polarization: 0.16 SS G_CDS: -0.69 Total: -0.52 kcal Total: -74.38 3.75 -70.63 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216984115.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.536 kcal (2) G-P(sol) polarization free energy of solvation -74.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds