Wall clock time and date at job start Mon Mar 30 2020 05:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31027 * 1 3 3 Si 1.86805 * 119.99706 * 2 1 4 4 H 1.48496 * 109.47041 * 239.99800 * 3 2 1 5 5 H 1.48495 * 109.47323 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46820 * 120.00252 * 3 2 1 7 7 C 1.39899 * 120.00127 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00119 * 160.06087 * 7 2 1 9 9 C 1.39806 * 120.00176 * 340.05847 * 7 2 1 10 10 C 1.40151 * 126.94299 * 146.89391 * 9 7 2 11 11 Br 1.89099 * 125.96751 * 359.97438 * 10 9 7 12 12 N 1.32233 * 108.06607 * 179.97438 * 10 9 7 13 13 C 1.33368 * 110.09897 * 359.97438 * 12 10 9 14 14 N 1.33696 * 131.33841 * 180.02562 * 13 12 10 15 15 C 1.31502 * 121.05736 * 179.97438 * 14 13 12 16 16 C 1.39986 * 120.40935 * 0.02562 * 15 14 13 17 17 C 1.35871 * 119.17333 * 359.97438 * 16 15 14 18 18 N 1.36308 * 119.02802 * 0.02562 * 17 16 15 19 19 H 0.96996 * 120.00450 * 359.97438 * 1 2 3 20 20 H 1.08007 * 119.79587 * 180.27657 * 15 14 13 21 21 H 1.07990 * 120.41579 * 180.02562 * 16 15 14 22 22 H 1.07994 * 120.48614 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3103 0.0000 0.0000 3 14 2.2442 1.6178 0.0000 4 1 3.0980 1.6965 -1.2124 5 1 1.2792 2.7465 0.0006 6 1 3.0980 1.6964 1.2125 7 6 2.0098 -1.2115 -0.0005 8 1 3.0413 -1.2394 -0.3195 9 6 1.3737 -2.3862 0.4119 10 6 1.5980 -3.6812 -0.0751 11 35 2.8307 -4.1616 -1.4261 12 7 0.7970 -4.5083 0.5753 13 6 0.0616 -3.8333 1.4597 14 7 -0.8700 -4.2410 2.3278 15 6 -1.4792 -3.3865 3.1202 16 6 -1.1628 -2.0238 3.0698 17 6 -0.2180 -1.5952 2.1924 18 7 0.3957 -2.5054 1.3844 19 1 -0.4850 0.8400 0.0004 20 1 -2.2255 -3.7387 3.8170 21 1 -1.6628 -1.3220 3.7208 22 1 0.0423 -0.5486 2.1355 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216984134.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:56 Heat of formation + Delta-G solvation = 89.896914 kcal Electronic energy + Delta-G solvation = -12727.079460 eV Core-core repulsion = 10329.515855 eV Total energy + Delta-G solvation = -2397.563605 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 266.970 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.35259 -36.92884 -34.45437 -32.73543 -30.64604 -29.57272 -28.68406 -25.36338 -23.03101 -22.07493 -20.07794 -18.16630 -16.77016 -15.94542 -15.50476 -14.91778 -14.80397 -13.46266 -13.31177 -12.56737 -12.11045 -12.04495 -11.64240 -11.49591 -11.08690 -10.80295 -10.70233 -9.77150 -9.71736 -9.51967 -9.11143 -8.70897 -7.88738 -7.38224 -6.97488 -4.69863 1.65579 2.16922 2.59034 2.83198 2.87262 2.90666 3.63420 3.66023 3.86591 4.61266 4.72457 4.87552 5.46357 5.69268 5.86987 6.22161 6.48497 6.66780 6.77828 7.10400 7.35674 7.59343 7.94772 8.14393 8.29019 8.85139 9.09822 9.75083 Molecular weight = 266.97amu Principal moments of inertia in cm(-1) A = 0.015889 B = 0.013445 C = 0.007502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.817174 B = 2082.000473 C = 3731.676018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.070 3.930 3 Si 0.919 3.081 4 H -0.258 1.258 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.439 4.439 8 H 0.109 0.891 9 C 0.224 3.776 10 C -0.058 4.058 11 Br -0.014 7.014 12 N -0.433 5.433 13 C 0.286 3.714 14 N -0.437 5.437 15 C 0.121 3.879 16 C -0.262 4.262 17 C 0.179 3.821 18 N -0.415 5.415 19 H 0.290 0.710 20 H 0.158 0.842 21 H 0.140 0.860 22 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.655 2.341 1.834 3.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.149 4.149 3 Si 0.742 3.258 4 H -0.182 1.182 5 H -0.200 1.200 6 H -0.185 1.185 7 C -0.474 4.474 8 H 0.127 0.873 9 C 0.109 3.891 10 C -0.270 4.270 11 Br 0.068 6.932 12 N -0.155 5.155 13 C -0.059 4.059 14 N -0.148 5.148 15 C -0.068 4.068 16 C -0.287 4.287 17 C 0.047 3.953 18 N -0.099 5.099 19 H 0.101 0.899 20 H 0.175 0.825 21 H 0.158 0.842 22 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 1.851 0.426 0.999 2.146 hybrid contribution -0.012 2.662 0.332 2.683 sum 1.839 3.089 1.330 3.833 Atomic orbital electron populations 1.69900 1.07626 1.30709 1.34724 1.26019 0.94847 1.01868 0.92125 0.86140 0.80101 0.78877 0.80680 1.18209 1.20018 1.18452 1.18598 0.99918 0.89256 1.39581 0.87325 1.18317 0.88089 0.94221 0.88453 1.21838 1.07653 0.91140 1.06381 1.96327 1.55428 1.93349 1.48075 1.69469 1.07157 1.32131 1.06721 1.20751 1.03067 0.78469 1.03567 1.67345 1.06176 1.37018 1.04262 1.22589 0.98181 0.89425 0.96599 1.21345 1.03769 0.98049 1.05523 1.22053 0.90784 0.95594 0.86852 1.43570 1.31027 1.08832 1.26507 0.89871 0.82464 0.84231 0.82354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -18.51 10.57 55.55 0.59 -17.93 14 2 C 0.07 1.56 4.55 -17.27 -0.08 1.48 14 3 Si 0.92 16.59 29.61 -169.99 -5.03 11.56 14 4 H -0.26 -4.68 7.11 56.52 0.40 -4.27 14 5 H -0.28 -4.85 7.11 56.52 0.40 -4.44 14 6 H -0.26 -4.64 7.11 56.52 0.40 -4.24 14 7 C -0.44 -10.61 9.02 -38.37 -0.35 -10.96 14 8 H 0.11 2.51 7.92 -52.48 -0.42 2.10 14 9 C 0.22 5.79 6.27 -83.58 -0.52 5.27 14 10 C -0.06 -1.51 7.69 -16.66 -0.13 -1.63 14 11 Br -0.01 -0.30 33.88 -68.01 -2.30 -2.61 14 12 N -0.43 -11.79 11.23 -11.84 -0.13 -11.93 14 13 C 0.29 7.49 8.89 -321.92 -2.86 4.63 14 14 N -0.44 -10.24 10.47 -13.59 -0.14 -10.38 14 15 C 0.12 2.25 11.26 -17.04 -0.19 2.05 14 16 C -0.26 -4.68 10.07 -39.78 -0.40 -5.08 14 17 C 0.18 3.83 9.37 -16.41 -0.15 3.68 14 18 N -0.42 -10.41 2.91 -61.67 -0.18 -10.59 14 19 H 0.29 6.05 8.30 -40.82 -0.34 5.71 14 20 H 0.16 2.17 8.06 -52.48 -0.42 1.75 14 21 H 0.14 1.89 8.06 -52.49 -0.42 1.46 14 22 H 0.16 3.24 6.08 -52.49 -0.32 2.92 14 LS Contribution 225.53 15.07 3.40 3.40 Total: -1.00 -28.86 225.53 -9.21 -38.06 By element: Atomic # 1 Polarization: 1.70 SS G_CDS: -0.71 Total: 0.99 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -4.69 Total: -0.57 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: 0.13 Total: -50.83 kcal Atomic # 14 Polarization: 16.59 SS G_CDS: -5.03 Total: 11.56 kcal Atomic # 35 Polarization: -0.30 SS G_CDS: -2.30 Total: -2.61 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -28.86 -9.21 -38.06 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216984134.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.960 kcal (2) G-P(sol) polarization free energy of solvation -28.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds