Wall clock time and date at job start Mon Mar 30 2020 05:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31027 * 1 3 3 Si 1.86805 * 119.99706 * 2 1 4 4 H 1.48496 * 109.47041 * 239.99800 * 3 2 1 5 5 H 1.48495 * 109.47323 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46820 * 120.00252 * 3 2 1 7 7 C 1.39899 * 120.00127 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00119 * 160.06087 * 7 2 1 9 9 C 1.39806 * 120.00176 * 340.05847 * 7 2 1 10 10 C 1.40151 * 126.94299 * 146.89391 * 9 7 2 11 11 Br 1.89099 * 125.96751 * 359.97438 * 10 9 7 12 12 N 1.32233 * 108.06607 * 179.97438 * 10 9 7 13 13 C 1.33368 * 110.09897 * 359.97438 * 12 10 9 14 14 N 1.33696 * 131.33841 * 180.02562 * 13 12 10 15 15 C 1.31502 * 121.05736 * 179.97438 * 14 13 12 16 16 C 1.39986 * 120.40935 * 0.02562 * 15 14 13 17 17 C 1.35871 * 119.17333 * 359.97438 * 16 15 14 18 18 N 1.36308 * 119.02802 * 0.02562 * 17 16 15 19 19 H 0.96996 * 120.00450 * 359.97438 * 1 2 3 20 20 H 1.08007 * 119.79587 * 180.27657 * 15 14 13 21 21 H 1.07990 * 120.41579 * 180.02562 * 16 15 14 22 22 H 1.07994 * 120.48614 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3103 0.0000 0.0000 3 14 2.2442 1.6178 0.0000 4 1 3.0980 1.6965 -1.2124 5 1 1.2792 2.7465 0.0006 6 1 3.0980 1.6964 1.2125 7 6 2.0098 -1.2115 -0.0005 8 1 3.0413 -1.2394 -0.3195 9 6 1.3737 -2.3862 0.4119 10 6 1.5980 -3.6812 -0.0751 11 35 2.8307 -4.1616 -1.4261 12 7 0.7970 -4.5083 0.5753 13 6 0.0616 -3.8333 1.4597 14 7 -0.8700 -4.2410 2.3278 15 6 -1.4792 -3.3865 3.1202 16 6 -1.1628 -2.0238 3.0698 17 6 -0.2180 -1.5952 2.1924 18 7 0.3957 -2.5054 1.3844 19 1 -0.4850 0.8400 0.0004 20 1 -2.2255 -3.7387 3.8170 21 1 -1.6628 -1.3220 3.7208 22 1 0.0423 -0.5486 2.1355 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216984134.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:56 Heat of formation + Delta-G solvation = 73.927510 kcal Electronic energy + Delta-G solvation = -12727.771946 eV Core-core repulsion = 10329.515855 eV Total energy + Delta-G solvation = -2398.256090 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 266.970 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.09977 -38.60377 -36.18145 -34.45259 -32.35548 -31.30088 -30.42000 -27.07827 -24.72161 -23.78155 -21.86716 -19.88898 -18.48180 -17.63289 -17.15166 -16.62147 -16.37590 -15.06341 -14.89929 -14.29370 -13.71125 -13.61971 -13.32537 -13.10721 -12.70939 -12.50336 -12.13338 -11.50971 -11.41837 -11.18773 -10.81694 -10.45235 -9.59504 -9.11381 -8.72220 -6.49318 0.02302 0.53827 0.81753 1.37536 1.41419 1.52719 1.95498 2.13933 2.16303 2.86048 3.00180 3.26087 3.94081 4.10486 4.38554 4.64961 4.90780 5.04768 5.12022 5.40241 5.67131 5.92478 6.19611 6.37846 6.55316 7.10146 7.34523 8.11172 Molecular weight = 266.97amu Principal moments of inertia in cm(-1) A = 0.015889 B = 0.013445 C = 0.007502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.817174 B = 2082.000473 C = 3731.676018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.041 3.959 3 Si 0.990 3.010 4 H -0.259 1.259 5 H -0.263 1.263 6 H -0.256 1.256 7 C -0.464 4.464 8 H 0.108 0.892 9 C 0.197 3.803 10 C -0.098 4.098 11 Br 0.009 6.991 12 N -0.476 5.476 13 C 0.269 3.731 14 N -0.478 5.478 15 C 0.148 3.852 16 C -0.238 4.238 17 C 0.147 3.853 18 N -0.423 5.423 19 H 0.300 0.700 20 H 0.215 0.785 21 H 0.195 0.805 22 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.568 4.187 3.413 5.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.175 4.175 3 Si 0.810 3.190 4 H -0.184 1.184 5 H -0.187 1.187 6 H -0.180 1.180 7 C -0.498 4.498 8 H 0.126 0.874 9 C 0.083 3.917 10 C -0.308 4.308 11 Br 0.091 6.909 12 N -0.199 5.199 13 C -0.076 4.076 14 N -0.191 5.191 15 C -0.040 4.040 16 C -0.262 4.262 17 C 0.016 3.984 18 N -0.107 5.107 19 H 0.111 0.889 20 H 0.232 0.768 21 H 0.212 0.788 22 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 0.770 2.274 2.566 3.514 hybrid contribution 0.141 2.096 0.001 2.101 sum 0.911 4.370 2.566 5.149 Atomic orbital electron populations 1.69929 1.08907 1.32127 1.34439 1.26795 0.95463 1.04424 0.90826 0.85088 0.78786 0.74609 0.80537 1.18353 1.18748 1.17955 1.18793 1.00095 0.89968 1.40958 0.87448 1.18707 0.88971 0.94788 0.89271 1.22293 1.08979 0.91601 1.07881 1.96253 1.54440 1.93232 1.46925 1.69392 1.08798 1.33280 1.08436 1.21193 1.03475 0.79102 1.03841 1.67499 1.07389 1.38455 1.05784 1.23743 0.96379 0.89449 0.94447 1.22029 1.01444 0.98804 1.03945 1.22555 0.92261 0.95751 0.87835 1.43705 1.31135 1.09116 1.26768 0.88895 0.76821 0.78755 0.81930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -37.57 10.57 21.83 0.23 -37.34 14 2 C 0.04 1.82 4.55 85.22 0.39 2.21 14 3 Si 0.99 32.99 29.61 68.60 2.03 35.02 14 4 H -0.26 -8.65 7.11 99.48 0.71 -7.95 14 5 H -0.26 -8.19 7.11 99.48 0.71 -7.48 14 6 H -0.26 -8.27 7.11 99.48 0.71 -7.56 14 7 C -0.46 -22.82 9.02 23.05 0.21 -22.61 14 8 H 0.11 5.10 7.92 -2.91 -0.02 5.08 14 9 C 0.20 10.49 6.27 38.94 0.24 10.73 14 10 C -0.10 -5.29 7.69 85.10 0.65 -4.63 14 11 Br 0.01 0.41 33.88 -20.37 -0.69 -0.28 14 12 N -0.48 -26.88 11.23 -191.37 -2.15 -29.03 14 13 C 0.27 14.29 8.89 261.18 2.32 16.61 14 14 N -0.48 -21.87 10.47 -196.91 -2.06 -23.93 14 15 C 0.15 4.91 11.26 85.17 0.96 5.87 14 16 C -0.24 -7.53 10.07 22.14 0.22 -7.31 14 17 C 0.15 6.06 9.37 83.45 0.78 6.84 14 18 N -0.42 -21.38 2.91 -349.01 -1.01 -22.40 14 19 H 0.30 12.08 8.30 -92.71 -0.77 11.31 14 20 H 0.22 4.55 8.06 -2.91 -0.02 4.52 14 21 H 0.20 3.96 8.06 -2.92 -0.02 3.93 14 22 H 0.16 6.43 6.08 -2.91 -0.02 6.41 14 Total: -1.00 -65.38 225.53 3.39 -61.99 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: 1.26 Total: 8.27 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: 5.78 Total: 7.70 kcal Atomic # 7 Polarization: -107.71 SS G_CDS: -4.99 Total: -112.70 kcal Atomic # 14 Polarization: 32.99 SS G_CDS: 2.03 Total: 35.02 kcal Atomic # 35 Polarization: 0.41 SS G_CDS: -0.69 Total: -0.28 kcal Total: -65.38 3.39 -61.99 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216984134.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.917 kcal (2) G-P(sol) polarization free energy of solvation -65.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds