Wall clock time and date at job start Mon Mar 30 2020 05:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30813 * 1 3 3 Si 1.86796 * 120.00395 * 2 1 4 4 H 1.48497 * 109.47171 * 269.99912 * 3 2 1 5 5 H 1.48504 * 109.47141 * 29.99765 * 3 2 1 6 6 H 1.48497 * 109.47232 * 149.99385 * 3 2 1 7 7 C 1.39918 * 119.99657 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99744 * 180.02562 * 7 2 1 9 9 C 1.41532 * 119.99843 * 0.02562 * 7 2 1 10 10 N 1.34040 * 125.45365 * 179.97438 * 9 7 2 11 11 C 1.32418 * 109.68343 * 179.97438 * 10 9 7 12 12 C 1.41038 * 132.56208 * 180.02562 * 11 10 9 13 13 Br 1.89093 * 120.36908 * 359.97438 * 12 11 10 14 14 C 1.36167 * 119.26384 * 180.02562 * 12 11 10 15 15 C 1.40392 * 119.66898 * 359.97438 * 14 12 11 16 16 C 1.35153 * 120.28327 * 359.75939 * 15 14 12 17 17 N 1.36053 * 120.62029 * 0.48466 * 16 15 14 18 18 N 1.33111 * 125.45877 * 359.97438 * 9 7 2 19 19 H 0.97005 * 119.99580 * 0.02562 * 1 2 3 20 20 H 1.07995 * 120.16582 * 180.02562 * 14 12 11 21 21 H 1.07993 * 119.86050 * 179.97438 * 15 14 12 22 22 H 1.08002 * 119.69149 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2422 1.6176 0.0000 4 1 2.4898 2.0463 -1.4000 5 1 1.4397 2.6527 0.7000 6 1 3.5397 1.4400 0.7001 7 6 2.0076 -1.2118 0.0005 8 1 3.0876 -1.2118 0.0010 9 6 1.2999 -2.4374 0.0005 10 7 1.8566 -3.6567 0.0005 11 6 0.9077 -4.5803 0.0011 12 6 0.9486 -5.9901 0.0018 13 35 2.6071 -6.8984 0.0014 14 6 -0.2195 -6.6899 0.0017 15 6 -1.4425 -6.0006 0.0015 16 6 -1.4633 -4.6493 0.0063 17 7 -0.3032 -3.9384 0.0014 18 7 -0.0252 -2.5639 0.0005 19 1 -0.4850 0.8401 -0.0004 20 1 -0.2051 -7.7698 0.0027 21 1 -2.3708 -6.5525 0.0010 22 1 -2.4096 -4.1287 0.0056 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216984203.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:18 Heat of formation + Delta-G solvation = 110.658213 kcal Electronic energy + Delta-G solvation = -12358.496228 eV Core-core repulsion = 9961.832900 eV Total energy + Delta-G solvation = -2396.663328 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 266.970 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.03826 -36.84747 -33.57746 -32.95294 -30.37977 -29.47360 -28.08517 -26.46808 -22.53232 -22.16776 -20.44690 -17.34591 -16.68852 -15.97664 -15.20801 -14.85223 -14.71942 -13.94211 -13.03744 -12.18998 -11.83473 -11.73093 -11.43471 -11.27668 -10.92016 -10.80570 -10.36498 -10.07032 -9.77122 -9.50422 -9.39835 -8.42617 -8.16436 -7.23059 -6.76668 -4.76674 1.26452 1.99753 2.07058 2.99332 3.06400 3.12037 3.55530 3.90000 3.90564 4.24599 4.90407 5.11429 5.37502 5.39607 5.55343 6.09451 6.32241 6.34619 6.79326 6.91120 7.11911 7.79132 7.92465 8.22622 8.52477 8.71238 9.70415 10.21073 Molecular weight = 266.97amu Principal moments of inertia in cm(-1) A = 0.032969 B = 0.006826 C = 0.005667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.072539 B = 4100.707480 C = 4939.937714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.757 5.757 2 C 0.067 3.933 3 Si 0.927 3.073 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.259 1.259 7 C -0.409 4.409 8 H 0.097 0.903 9 C 0.352 3.648 10 N -0.562 5.562 11 C 0.278 3.722 12 C -0.110 4.110 13 Br -0.039 7.039 14 C -0.034 4.034 15 C -0.228 4.228 16 C 0.154 3.846 17 N -0.303 5.303 18 N -0.355 5.355 19 H 0.280 0.720 20 H 0.138 0.862 21 H 0.147 0.853 22 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.451 -10.872 0.011 10.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.382 5.382 2 C -0.156 4.156 3 Si 0.751 3.249 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.183 1.183 7 C -0.449 4.449 8 H 0.115 0.885 9 C 0.101 3.899 10 N -0.292 5.292 11 C 0.019 3.981 12 C -0.195 4.195 13 Br 0.045 6.955 14 C -0.062 4.062 15 C -0.254 4.254 16 C 0.018 3.982 17 N -0.076 5.076 18 N -0.192 5.192 19 H 0.091 0.909 20 H 0.156 0.844 21 H 0.165 0.835 22 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -0.939 -10.249 0.013 10.292 hybrid contribution -0.271 0.689 -0.006 0.740 sum -1.210 -9.560 0.007 9.636 Atomic orbital electron populations 1.69891 1.07268 1.29011 1.32059 1.25984 0.95071 1.01507 0.93043 0.85989 0.80143 0.79468 0.79292 1.19266 1.20092 1.18286 1.18659 0.94502 0.86088 1.45646 0.88488 1.21172 0.87231 0.91122 0.90369 1.71152 1.28891 0.98603 1.30566 1.21310 0.84195 0.93171 0.99465 1.20272 0.92493 0.89927 1.16813 1.96553 1.26883 1.74214 1.97863 1.20875 0.90344 0.99962 0.95000 1.20394 0.98330 0.92187 1.14445 1.21413 0.89869 0.91689 0.95270 1.48868 1.05100 1.09007 1.44664 1.80149 1.15314 0.80020 1.43738 0.90902 0.84418 0.83525 0.82499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -20.48 11.89 55.54 0.66 -19.82 14 2 C 0.07 1.74 5.49 -17.36 -0.10 1.65 14 3 Si 0.93 19.03 29.56 -169.99 -5.02 14.01 14 4 H -0.27 -5.38 7.11 56.52 0.40 -4.98 14 5 H -0.28 -5.48 7.11 56.52 0.40 -5.08 14 6 H -0.26 -5.22 7.11 56.52 0.40 -4.82 14 7 C -0.41 -11.53 9.51 -37.70 -0.36 -11.89 14 8 H 0.10 2.61 7.84 -52.49 -0.41 2.19 14 9 C 0.35 10.34 7.60 -158.11 -1.20 9.13 14 10 N -0.56 -15.57 11.30 -11.98 -0.14 -15.71 14 11 C 0.28 6.78 7.65 -156.14 -1.20 5.58 14 12 C -0.11 -2.15 6.25 -39.27 -0.25 -2.40 14 13 Br -0.04 -0.68 33.73 -68.01 -2.29 -2.98 14 14 C -0.03 -0.52 9.81 -39.52 -0.39 -0.90 14 15 C -0.23 -3.29 9.99 -39.87 -0.40 -3.69 14 16 C 0.15 2.80 11.20 -16.78 -0.19 2.61 14 17 N -0.30 -7.34 3.90 -12.21 -0.05 -7.39 14 18 N -0.35 -10.13 10.96 30.81 0.34 -9.80 14 19 H 0.28 6.82 8.30 -40.82 -0.34 6.48 14 20 H 0.14 1.61 8.06 -52.49 -0.42 1.19 14 21 H 0.15 1.47 8.06 -52.49 -0.42 1.05 14 22 H 0.16 2.41 8.06 -52.49 -0.42 1.99 14 LS Contribution 230.47 15.07 3.47 3.47 Total: -1.00 -32.18 230.47 -7.91 -40.09 By element: Atomic # 1 Polarization: -1.16 SS G_CDS: -0.81 Total: -1.98 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: -4.07 Total: 0.10 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: 0.82 Total: -52.72 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.02 Total: 14.01 kcal Atomic # 35 Polarization: -0.68 SS G_CDS: -2.29 Total: -2.98 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -32.18 -7.91 -40.09 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216984203.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.753 kcal (2) G-P(sol) polarization free energy of solvation -32.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds