Wall clock time and date at job start Mon Mar 30 2020 05:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30813 * 1 3 3 Si 1.86796 * 120.00395 * 2 1 4 4 H 1.48497 * 109.47171 * 269.99912 * 3 2 1 5 5 H 1.48504 * 109.47141 * 29.99765 * 3 2 1 6 6 H 1.48497 * 109.47232 * 149.99385 * 3 2 1 7 7 C 1.39918 * 119.99657 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99744 * 180.02562 * 7 2 1 9 9 C 1.41532 * 119.99843 * 0.02562 * 7 2 1 10 10 N 1.34040 * 125.45365 * 179.97438 * 9 7 2 11 11 C 1.32418 * 109.68343 * 179.97438 * 10 9 7 12 12 C 1.41038 * 132.56208 * 180.02562 * 11 10 9 13 13 Br 1.89093 * 120.36908 * 359.97438 * 12 11 10 14 14 C 1.36167 * 119.26384 * 180.02562 * 12 11 10 15 15 C 1.40392 * 119.66898 * 359.97438 * 14 12 11 16 16 C 1.35153 * 120.28327 * 359.75939 * 15 14 12 17 17 N 1.36053 * 120.62029 * 0.48466 * 16 15 14 18 18 N 1.33111 * 125.45877 * 359.97438 * 9 7 2 19 19 H 0.97005 * 119.99580 * 0.02562 * 1 2 3 20 20 H 1.07995 * 120.16582 * 180.02562 * 14 12 11 21 21 H 1.07993 * 119.86050 * 179.97438 * 15 14 12 22 22 H 1.08002 * 119.69149 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2422 1.6176 0.0000 4 1 2.4898 2.0463 -1.4000 5 1 1.4397 2.6527 0.7000 6 1 3.5397 1.4400 0.7001 7 6 2.0076 -1.2118 0.0005 8 1 3.0876 -1.2118 0.0010 9 6 1.2999 -2.4374 0.0005 10 7 1.8566 -3.6567 0.0005 11 6 0.9077 -4.5803 0.0011 12 6 0.9486 -5.9901 0.0018 13 35 2.6071 -6.8984 0.0014 14 6 -0.2195 -6.6899 0.0017 15 6 -1.4425 -6.0006 0.0015 16 6 -1.4633 -4.6493 0.0063 17 7 -0.3032 -3.9384 0.0014 18 7 -0.0252 -2.5639 0.0005 19 1 -0.4850 0.8401 -0.0004 20 1 -0.2051 -7.7698 0.0027 21 1 -2.3708 -6.5525 0.0010 22 1 -2.4096 -4.1287 0.0056 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216984203.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:18 Heat of formation + Delta-G solvation = 89.309269 kcal Electronic energy + Delta-G solvation = -12359.421987 eV Core-core repulsion = 9961.832900 eV Total energy + Delta-G solvation = -2397.589087 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 266.970 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.78606 -38.46097 -35.45628 -34.55624 -31.95915 -31.23983 -29.67369 -28.35660 -24.13561 -23.79685 -22.28064 -19.20853 -18.37805 -17.52822 -16.87850 -16.63084 -16.23296 -15.47089 -14.76992 -13.58678 -13.38681 -13.32727 -13.19978 -12.84850 -12.74405 -12.52353 -11.98377 -11.79901 -11.25165 -11.19689 -10.95297 -10.35599 -10.00377 -8.90025 -8.65796 -6.80218 -0.19467 0.44029 0.61994 1.37932 1.38202 1.55337 1.95816 2.16171 2.20768 2.54519 3.36316 3.36484 3.71124 3.99359 4.23116 4.65725 4.86757 5.01614 5.09857 5.19509 5.49746 5.94650 6.10779 6.34284 6.60279 6.74748 7.79019 8.35004 Molecular weight = 266.97amu Principal moments of inertia in cm(-1) A = 0.032969 B = 0.006826 C = 0.005667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.072539 B = 4100.707480 C = 4939.937714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.025 3.975 3 Si 1.009 2.991 4 H -0.259 1.259 5 H -0.262 1.262 6 H -0.256 1.256 7 C -0.456 4.456 8 H 0.091 0.909 9 C 0.328 3.672 10 N -0.612 5.612 11 C 0.263 3.737 12 C -0.139 4.139 13 Br -0.024 7.024 14 C -0.005 4.005 15 C -0.181 4.181 16 C 0.120 3.880 17 N -0.321 5.321 18 N -0.397 5.397 19 H 0.288 0.712 20 H 0.191 0.809 21 H 0.212 0.788 22 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.857 -12.886 0.010 13.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.194 4.194 3 Si 0.827 3.173 4 H -0.183 1.183 5 H -0.186 1.186 6 H -0.179 1.179 7 C -0.495 4.495 8 H 0.109 0.891 9 C 0.074 3.926 10 N -0.345 5.345 11 C 0.006 3.994 12 C -0.224 4.224 13 Br 0.061 6.939 14 C -0.033 4.033 15 C -0.205 4.205 16 C -0.013 4.013 17 N -0.096 5.096 18 N -0.234 5.234 19 H 0.098 0.902 20 H 0.208 0.792 21 H 0.229 0.771 22 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -2.416 -12.346 0.012 12.581 hybrid contribution -0.031 0.887 -0.008 0.888 sum -2.447 -11.459 0.004 11.717 Atomic orbital electron populations 1.69978 1.08941 1.30393 1.32941 1.27012 0.95946 1.04826 0.91592 0.84816 0.78589 0.74151 0.79719 1.18305 1.18580 1.17929 1.18967 0.94566 0.87416 1.48595 0.89080 1.21535 0.87945 0.92148 0.90939 1.71034 1.30712 0.98789 1.33960 1.21881 0.83883 0.94731 0.98946 1.20729 0.95043 0.88209 1.18422 1.96551 1.26677 1.72791 1.97908 1.21651 0.88898 1.02423 0.90283 1.21261 1.00496 0.90548 1.08230 1.22337 0.89246 0.93396 0.96288 1.48830 1.06782 1.07995 1.45948 1.79865 1.15305 0.83168 1.45109 0.90171 0.79209 0.77149 0.80234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -44.90 11.89 21.82 0.26 -44.64 14 2 C 0.03 1.36 5.49 85.25 0.47 1.83 14 3 Si 1.01 40.16 29.56 68.60 2.03 42.18 14 4 H -0.26 -9.81 7.11 99.48 0.71 -9.11 14 5 H -0.26 -9.68 7.11 99.48 0.71 -8.97 14 6 H -0.26 -9.89 7.11 99.48 0.71 -9.18 14 7 C -0.46 -27.29 9.51 23.49 0.22 -27.06 14 8 H 0.09 5.26 7.84 -2.91 -0.02 5.24 14 9 C 0.33 20.40 7.60 135.06 1.03 21.43 14 10 N -0.61 -35.65 11.30 -191.81 -2.17 -37.81 14 11 C 0.26 13.02 7.65 134.18 1.03 14.04 14 12 C -0.14 -5.17 6.25 22.47 0.14 -5.03 14 13 Br -0.02 -0.78 33.73 -20.37 -0.69 -1.46 14 14 C 0.00 -0.13 9.81 22.31 0.22 0.09 14 15 C -0.18 -4.20 9.99 22.08 0.22 -3.98 14 16 C 0.12 4.07 11.20 83.33 0.93 5.00 14 17 N -0.32 -15.77 3.90 -192.55 -0.75 -16.52 14 18 N -0.40 -23.75 10.96 -56.45 -0.62 -24.37 14 19 H 0.29 14.46 8.30 -92.70 -0.77 13.70 14 20 H 0.19 3.00 8.06 -2.91 -0.02 2.98 14 21 H 0.21 2.35 8.06 -2.91 -0.02 2.33 14 22 H 0.18 5.10 8.06 -2.91 -0.02 5.07 14 Total: -1.00 -77.83 230.47 3.58 -74.25 By element: Atomic # 1 Polarization: 0.80 SS G_CDS: 1.26 Total: 2.05 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: 4.26 Total: 6.32 kcal Atomic # 7 Polarization: -120.07 SS G_CDS: -3.28 Total: -123.35 kcal Atomic # 14 Polarization: 40.16 SS G_CDS: 2.03 Total: 42.18 kcal Atomic # 35 Polarization: -0.78 SS G_CDS: -0.69 Total: -1.46 kcal Total: -77.83 3.58 -74.25 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216984203.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.564 kcal (2) G-P(sol) polarization free energy of solvation -77.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds