Wall clock time and date at job start Mon Mar 30 2020 05:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00321 * 2 1 4 4 H 1.48507 * 109.47042 * 270.00185 * 3 2 1 5 5 H 1.48499 * 109.47080 * 29.99852 * 3 2 1 6 6 H 1.48500 * 109.47492 * 150.00397 * 3 2 1 7 7 C 1.37878 * 119.99742 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99817 * 359.97438 * 7 2 1 9 9 S 1.76199 * 120.00041 * 179.97438 * 7 2 1 10 10 O 1.42089 * 106.40509 * 66.45879 * 9 7 2 11 11 O 1.42101 * 106.40107 * 293.53749 * 9 7 2 12 12 C 1.76207 * 107.21711 * 180.02562 * 9 7 2 13 13 C 1.38295 * 120.08311 * 270.02039 * 12 9 7 14 14 C 1.38688 * 120.46081 * 180.09063 * 13 12 9 15 15 C 1.39367 * 119.92032 * 359.82628 * 14 13 12 16 16 C 1.39207 * 118.90893 * 0.12415 * 15 14 13 17 17 C 1.37676 * 120.96452 * 359.97438 * 16 15 14 18 18 C 1.51138 * 106.18064 * 179.97438 * 16 15 14 19 19 C 1.51392 * 104.19000 * 0.11132 * 18 16 15 20 20 O 1.21286 * 126.44458 * 179.97438 * 19 18 16 21 21 N 1.34377 * 107.11317 * 359.93165 * 19 18 16 22 22 H 0.97007 * 119.99275 * 359.97438 * 1 2 3 23 23 H 1.08000 * 119.81960 * 0.02562 * 13 12 9 24 24 H 1.08002 * 120.14045 * 180.02562 * 14 13 12 25 25 H 1.08004 * 120.04155 * 179.97438 * 17 16 15 26 26 H 1.09002 * 110.51071 * 241.39584 * 18 16 15 27 27 H 1.09004 * 110.51137 * 118.82658 * 18 16 15 28 28 H 0.96996 * 123.87332 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5469 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 16 3.7665 -1.1942 -0.0012 10 8 4.1683 -0.6501 1.2483 11 8 4.1673 -0.6495 -1.2510 12 6 4.2880 -2.8773 -0.0025 13 6 4.4932 -3.5404 1.1936 14 6 4.9054 -4.8646 1.2017 15 6 5.1118 -5.5358 -0.0021 16 6 4.8999 -4.8544 -1.1974 17 6 4.4926 -3.5393 -1.2005 18 6 5.2039 -5.8390 -2.3031 19 6 5.5942 -7.1070 -1.5739 20 8 5.9183 -8.1596 -2.0819 21 7 5.5148 -6.8468 -0.2580 22 1 -0.4849 0.8402 0.0004 23 1 4.3325 -3.0239 2.1284 24 1 5.0637 -5.3776 2.1388 25 1 4.3330 -3.0248 -2.1367 26 1 6.0309 -5.4811 -2.9164 27 1 4.3196 -6.0084 -2.9175 28 1 5.7150 -7.4958 0.4345 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259040460.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:13 Heat of formation + Delta-G solvation = -75.644776 kcal Electronic energy + Delta-G solvation = -17577.217064 eV Core-core repulsion = 14492.486768 eV Total energy + Delta-G solvation = -3084.730296 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.040 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.49305 -38.45518 -35.77916 -35.70252 -34.49444 -33.09432 -32.35624 -29.80535 -28.05570 -26.46900 -23.04314 -22.01494 -21.28655 -18.84357 -18.03087 -17.51618 -16.81764 -16.61490 -16.18128 -15.25124 -14.97811 -14.40044 -14.12471 -13.71877 -13.55487 -13.20838 -13.14865 -13.01721 -12.86212 -12.63494 -11.45097 -11.23227 -11.10503 -11.00769 -10.68818 -10.65362 -10.53594 -10.35474 -9.64369 -9.25321 -9.05977 -8.86614 -8.28934 -6.85985 -5.42551 0.83969 1.32950 1.78666 2.22688 2.77051 3.05325 3.15508 3.24441 3.57372 3.91705 3.96296 4.28031 4.53591 4.72170 4.75527 5.07289 5.16433 5.23005 5.32653 5.45487 5.61300 5.80179 5.95625 5.99957 6.21678 6.45436 6.54037 6.59109 6.89875 7.41127 7.71814 8.14114 8.62711 10.25651 Molecular weight = 267.04amu Principal moments of inertia in cm(-1) A = 0.040873 B = 0.005461 C = 0.005349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.876067 B = 5126.071776 C = 5233.702444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.153 3.847 3 Si 0.801 3.199 4 H -0.245 1.245 5 H -0.255 1.255 6 H -0.217 1.217 7 C -0.997 4.997 8 H 0.124 0.876 9 S 2.563 3.437 10 O -0.986 6.986 11 O -0.989 6.989 12 C -0.646 4.646 13 C 0.010 3.990 14 C -0.161 4.161 15 C 0.172 3.828 16 C -0.169 4.169 17 C 0.029 3.971 18 C -0.113 4.113 19 C 0.531 3.469 20 O -0.508 6.508 21 N -0.659 5.659 22 H 0.282 0.718 23 H 0.151 0.849 24 H 0.133 0.867 25 H 0.150 0.850 26 H 0.125 0.875 27 H 0.127 0.873 28 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.901 -8.753 0.303 11.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.067 4.067 3 Si 0.620 3.380 4 H -0.169 1.169 5 H -0.179 1.179 6 H -0.139 1.139 7 C -1.131 5.131 8 H 0.142 0.858 9 S 2.748 3.252 10 O -0.983 6.983 11 O -0.986 6.986 12 C -0.731 4.731 13 C -0.009 4.009 14 C -0.183 4.183 15 C 0.074 3.926 16 C -0.172 4.172 17 C 0.010 3.990 18 C -0.152 4.152 19 C 0.319 3.681 20 O -0.383 6.383 21 N -0.302 5.302 22 H 0.093 0.907 23 H 0.169 0.831 24 H 0.151 0.849 25 H 0.167 0.833 26 H 0.143 0.857 27 H 0.144 0.856 28 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 8.496 -8.617 -0.114 12.102 hybrid contribution -0.278 -0.410 0.474 0.686 sum 8.218 -9.027 0.361 12.213 Atomic orbital electron populations 1.69979 1.06552 1.29237 1.39062 1.24416 0.94793 0.98842 0.88603 0.87868 0.83722 0.84353 0.82036 1.16852 1.17865 1.13850 1.29949 1.13494 1.02433 1.67247 0.85823 1.01898 0.77970 0.71460 0.73838 1.93445 1.85342 1.75256 1.44298 1.93390 1.85341 1.75412 1.44428 1.31027 1.16460 1.27589 0.98006 1.20960 0.89696 0.92428 0.97793 1.20624 1.07109 0.95218 0.95302 1.18405 0.94883 0.83620 0.95653 1.19867 1.08496 0.95414 0.93463 1.20090 0.89779 0.91138 0.98013 1.21048 1.05199 0.91180 0.97799 1.20700 0.75544 0.89547 0.82272 1.90809 1.47358 1.28478 1.71622 1.43811 1.65041 1.11922 1.09435 0.90706 0.83099 0.84916 0.83284 0.85686 0.85572 0.74885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.74 13.96 55.43 0.77 -21.96 15 2 C 0.15 4.20 5.47 -17.82 -0.10 4.10 15 3 Si 0.80 19.53 26.54 -169.99 -4.51 15.02 15 4 H -0.24 -5.83 7.11 56.52 0.40 -5.43 15 5 H -0.25 -5.73 7.11 56.52 0.40 -5.32 15 6 H -0.22 -5.31 5.61 56.52 0.32 -5.00 15 7 C -1.00 -26.27 10.12 30.60 0.31 -25.96 15 8 H 0.12 3.29 8.06 -52.49 -0.42 2.87 15 9 S 2.56 59.75 3.87 -107.50 -0.42 59.34 15 10 O -0.99 -24.37 15.17 -57.18 -0.87 -25.24 15 11 O -0.99 -24.38 15.99 -57.18 -0.91 -25.30 15 12 C -0.65 -11.97 5.82 -39.50 -0.23 -12.20 15 13 C 0.01 0.17 9.53 -39.39 -0.38 -0.21 15 14 C -0.16 -2.08 10.12 -39.00 -0.39 -2.47 15 15 C 0.17 2.22 7.12 -83.58 -0.59 1.62 15 16 C -0.17 -2.33 6.36 -104.25 -0.66 -2.99 15 17 C 0.03 0.47 9.51 -39.73 -0.38 0.09 15 18 C -0.11 -1.24 6.87 -28.48 -0.20 -1.44 15 19 C 0.53 6.56 8.71 -10.82 -0.09 6.46 15 20 O -0.51 -7.67 18.03 5.55 0.10 -7.57 15 21 N -0.66 -7.22 5.88 -9.63 -0.06 -7.27 15 22 H 0.28 7.09 8.31 -40.82 -0.34 6.75 15 23 H 0.15 2.26 7.62 -52.49 -0.40 1.86 15 24 H 0.13 1.26 8.06 -52.49 -0.42 0.84 15 25 H 0.15 2.28 7.63 -52.48 -0.40 1.88 15 26 H 0.13 1.14 8.14 -51.93 -0.42 0.71 15 27 H 0.13 1.19 8.14 -51.93 -0.42 0.77 15 28 H 0.41 3.45 8.96 -40.82 -0.37 3.08 15 LS Contribution 263.80 15.07 3.98 3.98 Total: -1.00 -32.30 263.80 -6.71 -39.01 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -2.08 Total: 3.00 kcal Atomic # 6 Polarization: -30.28 SS G_CDS: -2.71 Total: -32.99 kcal Atomic # 7 Polarization: -29.95 SS G_CDS: 0.72 Total: -29.24 kcal Atomic # 8 Polarization: -56.43 SS G_CDS: -1.68 Total: -58.11 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -4.51 Total: 15.02 kcal Atomic # 16 Polarization: 59.75 SS G_CDS: -0.42 Total: 59.34 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -32.30 -6.71 -39.01 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259040460.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.634 kcal (2) G-P(sol) polarization free energy of solvation -32.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds