Wall clock time and date at job start Mon Mar 30 2020 05:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00321 * 2 1 4 4 H 1.48507 * 109.47042 * 270.00185 * 3 2 1 5 5 H 1.48499 * 109.47080 * 29.99852 * 3 2 1 6 6 H 1.48500 * 109.47492 * 150.00397 * 3 2 1 7 7 C 1.37878 * 119.99742 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99817 * 359.97438 * 7 2 1 9 9 S 1.76199 * 120.00041 * 179.97438 * 7 2 1 10 10 O 1.42089 * 106.40509 * 66.45879 * 9 7 2 11 11 O 1.42101 * 106.40107 * 293.53749 * 9 7 2 12 12 C 1.76207 * 107.21711 * 180.02562 * 9 7 2 13 13 C 1.38295 * 120.08311 * 270.02039 * 12 9 7 14 14 C 1.38688 * 120.46081 * 180.09063 * 13 12 9 15 15 C 1.39367 * 119.92032 * 359.82628 * 14 13 12 16 16 C 1.39207 * 118.90893 * 0.12415 * 15 14 13 17 17 C 1.37676 * 120.96452 * 359.97438 * 16 15 14 18 18 C 1.51138 * 106.18064 * 179.97438 * 16 15 14 19 19 C 1.51392 * 104.19000 * 0.11132 * 18 16 15 20 20 O 1.21286 * 126.44458 * 179.97438 * 19 18 16 21 21 N 1.34377 * 107.11317 * 359.93165 * 19 18 16 22 22 H 0.97007 * 119.99275 * 359.97438 * 1 2 3 23 23 H 1.08000 * 119.81960 * 0.02562 * 13 12 9 24 24 H 1.08002 * 120.14045 * 180.02562 * 14 13 12 25 25 H 1.08004 * 120.04155 * 179.97438 * 17 16 15 26 26 H 1.09002 * 110.51071 * 241.39584 * 18 16 15 27 27 H 1.09004 * 110.51137 * 118.82658 * 18 16 15 28 28 H 0.96996 * 123.87332 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5469 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 16 3.7665 -1.1942 -0.0012 10 8 4.1683 -0.6501 1.2483 11 8 4.1673 -0.6495 -1.2510 12 6 4.2880 -2.8773 -0.0025 13 6 4.4932 -3.5404 1.1936 14 6 4.9054 -4.8646 1.2017 15 6 5.1118 -5.5358 -0.0021 16 6 4.8999 -4.8544 -1.1974 17 6 4.4926 -3.5393 -1.2005 18 6 5.2039 -5.8390 -2.3031 19 6 5.5942 -7.1070 -1.5739 20 8 5.9183 -8.1596 -2.0819 21 7 5.5148 -6.8468 -0.2580 22 1 -0.4849 0.8402 0.0004 23 1 4.3325 -3.0239 2.1284 24 1 5.0637 -5.3776 2.1388 25 1 4.3330 -3.0248 -2.1367 26 1 6.0309 -5.4811 -2.9164 27 1 4.3196 -6.0084 -2.9175 28 1 5.7150 -7.4958 0.4345 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259040460.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:13 Heat of formation + Delta-G solvation = -101.062950 kcal Electronic energy + Delta-G solvation = -17578.319278 eV Core-core repulsion = 14492.486768 eV Total energy + Delta-G solvation = -3085.832511 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.040 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.52662 -39.56945 -37.60758 -36.88546 -36.39148 -35.15172 -33.39917 -30.95007 -29.13484 -28.51829 -24.25251 -23.13029 -22.28198 -20.69631 -19.26074 -19.08751 -18.51004 -17.79668 -17.15935 -17.05143 -16.41470 -15.68251 -15.45137 -15.26153 -15.11516 -14.95526 -14.36225 -14.31095 -14.15016 -13.56175 -13.38988 -13.11424 -12.62644 -12.52740 -12.35870 -12.21788 -12.13720 -11.57063 -11.34342 -11.25124 -10.99773 -9.98972 -9.42863 -8.92723 -7.50162 -0.37864 0.03079 0.19434 1.11405 1.20614 1.21444 1.28603 1.80879 1.94861 2.40975 2.46201 2.91302 3.03881 3.26570 3.45938 3.69780 3.97612 4.06779 4.27342 4.44466 4.51720 4.66847 4.80924 4.87307 5.00425 5.16024 5.36079 5.40480 5.62026 5.78833 6.04629 6.56402 6.79652 8.24384 Molecular weight = 267.04amu Principal moments of inertia in cm(-1) A = 0.040873 B = 0.005461 C = 0.005349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.876067 B = 5126.071776 C = 5233.702444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.109 3.891 3 Si 0.823 3.177 4 H -0.238 1.238 5 H -0.223 1.223 6 H -0.222 1.222 7 C -1.019 5.019 8 H 0.107 0.893 9 S 2.577 3.423 10 O -1.007 7.007 11 O -1.010 7.010 12 C -0.665 4.665 13 C -0.004 4.004 14 C -0.145 4.145 15 C 0.183 3.817 16 C -0.167 4.167 17 C 0.015 3.985 18 C -0.110 4.110 19 C 0.534 3.466 20 O -0.534 6.534 21 N -0.645 5.645 22 H 0.292 0.708 23 H 0.155 0.845 24 H 0.175 0.825 25 H 0.151 0.849 26 H 0.149 0.851 27 H 0.146 0.854 28 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.226 -10.224 0.501 13.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.107 4.107 3 Si 0.639 3.361 4 H -0.162 1.162 5 H -0.145 1.145 6 H -0.144 1.144 7 C -1.152 5.152 8 H 0.125 0.875 9 S 2.766 3.234 10 O -1.004 7.004 11 O -1.007 7.007 12 C -0.756 4.756 13 C -0.023 4.023 14 C -0.167 4.167 15 C 0.084 3.916 16 C -0.171 4.171 17 C -0.004 4.004 18 C -0.149 4.149 19 C 0.324 3.676 20 O -0.411 6.411 21 N -0.288 5.288 22 H 0.102 0.898 23 H 0.173 0.827 24 H 0.192 0.808 25 H 0.168 0.832 26 H 0.166 0.834 27 H 0.163 0.837 28 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 9.772 -10.029 0.103 14.003 hybrid contribution -0.637 -0.178 0.411 0.778 sum 9.135 -10.207 0.514 13.708 Atomic orbital electron populations 1.70011 1.07503 1.30563 1.40291 1.25159 0.95574 1.01481 0.88529 0.87510 0.83178 0.82608 0.82755 1.16166 1.14523 1.14401 1.30519 1.16338 1.01756 1.66540 0.87460 1.00993 0.76077 0.73385 0.72918 1.93405 1.84834 1.77343 1.44837 1.93350 1.84844 1.77493 1.44985 1.30206 1.20095 1.24957 1.00306 1.21139 0.90314 0.93898 0.96968 1.20903 1.04891 0.93787 0.97086 1.18512 0.93493 0.84159 0.95461 1.20005 1.07219 0.94636 0.95231 1.20124 0.90628 0.92391 0.97288 1.21179 1.06894 0.89499 0.97297 1.20815 0.74859 0.89385 0.82561 1.90814 1.48675 1.29559 1.72060 1.43712 1.64006 1.11351 1.09703 0.89769 0.82712 0.80803 0.83161 0.83355 0.83669 0.73137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.27 13.96 21.45 0.30 -47.97 15 2 C 0.11 6.09 5.47 84.65 0.46 6.55 15 3 Si 0.82 39.63 26.54 68.60 1.82 41.45 15 4 H -0.24 -11.13 7.11 99.48 0.71 -10.42 15 5 H -0.22 -9.51 7.11 99.48 0.71 -8.81 15 6 H -0.22 -10.84 5.61 99.48 0.56 -10.28 15 7 C -1.02 -55.31 10.12 67.73 0.69 -54.63 15 8 H 0.11 5.96 8.06 -2.91 -0.02 5.94 15 9 S 2.58 121.85 3.87 -56.49 -0.22 121.63 15 10 O -1.01 -50.30 15.17 -128.00 -1.94 -52.24 15 11 O -1.01 -50.45 15.99 -128.00 -2.05 -52.50 15 12 C -0.66 -24.34 5.82 22.32 0.13 -24.21 15 13 C 0.00 -0.11 9.53 22.39 0.21 0.10 15 14 C -0.15 -3.24 10.12 22.65 0.23 -3.01 15 15 C 0.18 4.06 7.12 38.42 0.27 4.33 15 16 C -0.17 -4.15 6.36 -19.63 -0.12 -4.27 15 17 C 0.02 0.47 9.51 22.17 0.21 0.68 15 18 C -0.11 -2.04 6.87 29.46 0.20 -1.83 15 19 C 0.53 11.38 8.71 87.94 0.77 12.15 15 20 O -0.53 -14.67 18.03 -3.05 -0.05 -14.72 15 21 N -0.64 -11.61 5.88 -302.98 -1.78 -13.39 15 22 H 0.29 14.84 8.31 -92.70 -0.77 14.07 15 23 H 0.16 4.49 7.62 -2.91 -0.02 4.46 15 24 H 0.17 2.43 8.06 -2.91 -0.02 2.40 15 25 H 0.15 4.56 7.63 -2.91 -0.02 4.54 15 26 H 0.15 2.14 8.14 -2.39 -0.02 2.12 15 27 H 0.15 2.23 8.14 -2.39 -0.02 2.21 15 28 H 0.43 5.36 8.96 -92.71 -0.83 4.53 15 Total: -1.00 -70.49 263.80 -0.63 -71.13 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: 0.24 Total: 10.76 kcal Atomic # 6 Polarization: -67.18 SS G_CDS: 3.05 Total: -64.14 kcal Atomic # 7 Polarization: -59.88 SS G_CDS: -1.48 Total: -61.36 kcal Atomic # 8 Polarization: -115.42 SS G_CDS: -4.04 Total: -119.46 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 1.82 Total: 41.45 kcal Atomic # 16 Polarization: 121.85 SS G_CDS: -0.22 Total: 121.63 kcal Total: -70.49 -0.63 -71.13 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259040460.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.935 kcal (2) G-P(sol) polarization free energy of solvation -70.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds