Wall clock time and date at job start Mon Mar 30 2020 05:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30499 * 1 3 3 Si 1.86807 * 119.99914 * 2 1 4 4 H 1.48502 * 109.46710 * 240.00167 * 3 2 1 5 5 H 1.48497 * 109.47069 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47154 * 119.99989 * 3 2 1 7 7 C 1.40609 * 120.00168 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00353 * 180.02562 * 7 2 1 9 9 C 1.39366 * 120.00039 * 359.97438 * 7 2 1 10 10 S 1.76200 * 126.30247 * 0.04392 * 9 7 2 11 11 C 1.70793 * 90.66197 * 179.97438 * 10 9 7 12 12 C 1.50700 * 124.30832 * 180.26611 * 11 10 9 13 13 F 1.39897 * 109.47655 * 184.72535 * 12 11 10 14 14 F 1.39905 * 109.46967 * 304.72954 * 12 11 10 15 15 F 1.39905 * 109.47341 * 64.72512 * 12 11 10 16 16 N 1.28964 * 111.38267 * 0.02562 * 11 10 9 17 17 C 1.31884 * 117.63761 * 0.02562 * 16 11 10 18 18 C 1.46870 * 123.53876 * 180.02562 * 17 16 11 19 19 O 1.21599 * 119.99856 * 179.97438 * 18 17 16 20 20 O 1.34902 * 119.99732 * 359.97438 * 18 17 16 21 21 H 0.97007 * 120.00053 * 359.97438 * 1 2 3 22 22 H 0.96699 * 116.99512 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3050 0.0000 0.0000 3 14 2.2390 1.6178 0.0000 4 1 3.0927 1.6964 -1.2126 5 1 1.2740 2.7465 -0.0006 6 1 3.0928 1.6965 1.2125 7 6 2.0081 -1.2177 -0.0005 8 1 3.0881 -1.2177 -0.0001 9 6 1.3113 -2.4247 -0.0005 10 16 -0.4401 -2.6182 -0.0010 11 6 -0.2721 -4.3178 -0.0014 12 6 -1.4274 -5.2855 -0.0078 13 9 -0.9414 -6.5927 0.1023 14 9 -2.2726 -5.0097 1.0724 15 9 -2.1407 -5.1524 -1.2039 16 7 0.9691 -4.6677 -0.0007 17 6 1.8749 -3.7091 0.0007 18 6 3.3220 -3.9600 0.0011 19 8 4.1010 -3.0263 0.0020 20 8 3.7869 -5.2264 0.0005 21 1 -0.4850 0.8401 0.0004 22 1 4.7470 -5.3415 0.0004 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259904675.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:13 Heat of formation + Delta-G solvation = -234.120673 kcal Electronic energy + Delta-G solvation = -17923.698723 eV Core-core repulsion = 14154.406562 eV Total energy + Delta-G solvation = -3769.292161 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 266.996 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.33100 -46.88681 -46.82377 -39.22066 -37.46699 -35.24663 -34.74244 -30.54512 -28.02116 -25.18154 -23.67633 -21.38723 -19.41504 -18.87914 -17.79014 -17.75433 -17.07378 -16.66633 -15.70491 -15.57051 -14.69331 -14.36132 -13.82716 -13.71326 -13.40165 -13.32201 -13.03521 -13.03384 -12.75841 -12.44190 -12.38487 -11.95718 -11.80539 -11.28207 -10.84334 -10.63910 -10.34847 -10.26375 -9.31551 -8.53194 -8.50502 -7.76492 -7.68777 -5.37678 1.94281 2.63830 2.65050 2.70803 2.72218 2.84886 3.17325 3.38597 3.51654 3.95966 4.24041 4.61963 4.62344 5.14633 5.27062 5.98614 6.18000 6.53471 7.02782 7.24518 7.53587 7.68766 7.71207 8.70242 9.09208 9.14745 Molecular weight = 267.00amu Principal moments of inertia in cm(-1) A = 0.020387 B = 0.008688 C = 0.006332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.081942 B = 3222.100334 C = 4420.683460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.728 5.728 2 C 0.039 3.961 3 Si 0.952 3.048 4 H -0.251 1.251 5 H -0.267 1.267 6 H -0.251 1.251 7 C -0.290 4.290 8 H 0.139 0.861 9 C 0.021 3.979 10 S 0.176 5.824 11 C -0.267 4.267 12 C 0.562 3.438 13 F -0.176 7.176 14 F -0.183 7.183 15 F -0.184 7.184 16 N -0.342 5.342 17 C -0.169 4.169 18 C 0.571 3.429 19 O -0.545 6.545 20 O -0.514 6.514 21 H 0.314 0.686 22 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.681 1.345 0.002 1.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.351 5.351 2 C -0.190 4.190 3 Si 0.773 3.227 4 H -0.175 1.175 5 H -0.191 1.191 6 H -0.175 1.175 7 C -0.326 4.326 8 H 0.156 0.844 9 C -0.104 4.104 10 S 0.427 5.573 11 C -0.536 4.536 12 C 0.505 3.495 13 F -0.158 7.158 14 F -0.165 7.165 15 F -0.166 7.166 16 N -0.056 5.056 17 C -0.303 4.303 18 C 0.420 3.580 19 O -0.437 6.437 20 O -0.323 6.323 21 H 0.128 0.872 22 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -2.027 1.637 0.001 2.605 hybrid contribution 1.539 0.074 -0.002 1.541 sum -0.488 1.711 -0.002 1.779 Atomic orbital electron populations 1.68741 1.08469 1.33013 1.24862 1.26841 0.95361 1.04327 0.92454 0.85548 0.79736 0.75947 0.81493 1.17496 1.19148 1.17491 1.20341 0.98378 0.87798 1.26120 0.84401 1.23119 0.95075 0.95667 0.96558 1.84254 1.03187 0.93856 1.76006 1.25431 0.94021 1.00347 1.33844 1.17088 0.80855 0.78598 0.72962 1.93134 1.87994 1.38872 1.95768 1.93146 1.73301 1.93744 1.56298 1.93149 1.80201 1.95849 1.47364 1.64943 0.99402 1.37989 1.03252 1.18365 0.89459 0.87405 1.35062 1.19473 0.87552 0.79267 0.71705 1.90735 1.57832 1.44259 1.50913 1.84780 1.29297 1.31394 1.86846 0.87225 0.75192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -15.02 10.75 55.58 0.60 -14.42 14 2 C 0.04 0.80 5.51 -17.22 -0.09 0.71 14 3 Si 0.95 15.24 29.57 -169.99 -5.03 10.22 14 4 H -0.25 -4.04 7.11 56.52 0.40 -3.64 14 5 H -0.27 -4.01 7.11 56.52 0.40 -3.61 14 6 H -0.25 -4.04 7.11 56.52 0.40 -3.64 14 7 C -0.29 -6.79 8.83 -38.27 -0.34 -7.13 14 8 H 0.14 3.25 5.65 -52.49 -0.30 2.95 14 9 C 0.02 0.53 6.28 -38.40 -0.24 0.29 14 10 S 0.18 4.16 20.20 -107.50 -2.17 1.99 14 11 C -0.27 -6.51 6.67 -13.48 -0.09 -6.60 14 12 C 0.56 12.25 3.51 36.01 0.13 12.38 14 13 F -0.18 -3.83 17.07 2.25 0.04 -3.79 14 14 F -0.18 -3.76 17.30 2.25 0.04 -3.72 14 15 F -0.18 -3.80 17.30 2.25 0.04 -3.76 14 16 N -0.34 -8.86 10.09 -7.71 -0.08 -8.94 14 17 C -0.17 -4.36 6.84 -83.59 -0.57 -4.93 14 18 C 0.57 13.53 8.31 34.22 0.28 13.81 14 19 O -0.54 -13.15 15.13 -19.34 -0.29 -13.44 14 20 O -0.51 -10.31 13.38 -41.05 -0.55 -10.86 14 21 H 0.31 5.60 8.29 -40.82 -0.34 5.26 14 22 H 0.39 5.43 9.11 45.56 0.42 5.85 14 LS Contribution 241.10 15.07 3.63 3.63 Total: -1.00 -27.70 241.10 -3.71 -31.41 By element: Atomic # 1 Polarization: 2.19 SS G_CDS: 0.99 Total: 3.17 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: -0.92 Total: 8.52 kcal Atomic # 7 Polarization: -23.88 SS G_CDS: 0.52 Total: -23.36 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.84 Total: -24.30 kcal Atomic # 9 Polarization: -11.39 SS G_CDS: 0.12 Total: -11.27 kcal Atomic # 14 Polarization: 15.24 SS G_CDS: -5.03 Total: 10.22 kcal Atomic # 16 Polarization: 4.16 SS G_CDS: -2.17 Total: 1.99 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -27.70 -3.71 -31.41 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259904675.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -202.713 kcal (2) G-P(sol) polarization free energy of solvation -27.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds