Wall clock time and date at job start Mon Mar 30 2020 05:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31117 * 1 3 3 Si 1.86798 * 120.00603 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00682 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00432 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00143 * 3 2 1 7 7 C 1.39695 * 119.99408 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99767 * 179.97438 * 7 2 1 9 9 C 1.40709 * 120.00165 * 359.72345 * 7 2 1 10 10 C 1.41321 * 126.67690 * 0.02562 * 9 7 2 11 11 N 1.30585 * 108.73854 * 180.02562 * 10 9 7 12 12 N 1.39874 * 109.83865 * 0.02562 * 11 10 9 13 13 C 1.36516 * 132.13247 * 180.02562 * 12 11 10 14 14 C 1.35969 * 119.08942 * 179.97438 * 13 12 11 15 15 Br 1.89101 * 120.33498 * 179.97438 * 14 13 12 16 16 C 1.39970 * 119.32905 * 359.97438 * 14 13 12 17 17 N 1.31714 * 120.12279 * 359.97438 * 16 14 13 18 18 C 1.32901 * 120.92568 * 359.72625 * 17 16 14 19 19 H 0.97001 * 119.99364 * 359.97438 * 1 2 3 20 20 H 1.08001 * 125.63237 * 359.97438 * 10 9 7 21 21 H 1.08002 * 120.45314 * 359.95186 * 13 12 11 22 22 H 1.08001 * 119.93987 * 179.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3112 0.0000 0.0000 3 14 2.2453 1.6176 0.0000 4 1 2.4927 2.0464 -1.4000 5 1 1.4428 2.6525 0.7002 6 1 3.5429 1.4399 0.7000 7 6 2.0095 -1.2099 -0.0005 8 1 3.0896 -1.2099 -0.0010 9 6 1.3059 -2.4284 0.0048 10 6 -0.0977 -2.5926 0.0105 11 7 -0.3707 -3.8696 0.0149 12 7 0.8167 -4.6088 0.0130 13 6 1.0592 -5.9523 0.0154 14 6 2.3458 -6.3919 0.0119 15 35 2.7220 -8.2451 0.0158 16 6 3.3891 -5.4588 0.0055 17 7 3.1223 -4.1689 0.0022 18 6 1.8675 -3.7310 -0.0004 19 1 -0.4849 0.8401 0.0004 20 1 -0.8247 -1.7938 0.0119 21 1 0.2401 -6.6563 0.0203 22 1 4.4148 -5.7970 0.0031 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260722233.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:32 Heat of formation + Delta-G solvation = 109.402509 kcal Electronic energy + Delta-G solvation = -12330.146809 eV Core-core repulsion = 9933.429030 eV Total energy + Delta-G solvation = -2396.717779 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 266.970 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.71005 -36.83900 -34.17355 -32.73133 -31.19094 -29.17746 -28.22132 -25.11344 -23.67605 -21.58421 -20.28361 -17.86821 -16.47390 -16.22216 -15.01384 -14.86800 -14.70301 -13.41913 -13.14415 -12.30238 -11.95700 -11.90208 -11.48488 -11.45184 -11.18940 -10.80855 -10.51160 -10.16139 -10.03450 -9.68059 -9.31939 -8.68742 -8.18618 -7.23269 -7.05596 -4.26512 1.60150 1.79081 1.91562 2.92642 2.96897 3.02980 3.52965 3.75886 3.86658 4.30123 5.07278 5.17133 5.25501 5.49483 6.07805 6.38730 6.50610 6.66214 6.98809 7.21964 7.52298 7.73897 8.14624 8.29550 8.54150 8.85036 9.02506 9.89891 Molecular weight = 266.97amu Principal moments of inertia in cm(-1) A = 0.060380 B = 0.005227 C = 0.004819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.614621 B = 5355.122485 C = 5808.888954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.060 3.940 3 Si 0.934 3.066 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.377 4.377 8 H 0.091 0.909 9 C 0.032 3.968 10 C 0.047 3.953 11 N -0.307 5.307 12 N -0.347 5.347 13 C 0.178 3.822 14 C -0.195 4.195 15 Br -0.051 7.051 16 C 0.047 3.953 17 N -0.381 5.381 18 C 0.056 3.944 19 H 0.288 0.712 20 H 0.221 0.779 21 H 0.156 0.844 22 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.491 -8.458 0.025 8.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.156 4.156 3 Si 0.758 3.242 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.409 4.409 8 H 0.109 0.891 9 C 0.021 3.979 10 C -0.137 4.137 11 N -0.128 5.128 12 N -0.129 5.129 13 C 0.043 3.957 14 C -0.283 4.283 15 Br 0.031 6.969 16 C -0.139 4.139 17 N -0.089 5.089 18 C -0.166 4.166 19 H 0.100 0.900 20 H 0.237 0.763 21 H 0.174 0.826 22 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 1.997 -8.892 0.039 9.113 hybrid contribution 0.205 0.867 -0.006 0.891 sum 2.202 -8.025 0.033 8.322 Atomic orbital electron populations 1.69404 1.07696 1.29966 1.36334 1.26069 0.95074 1.02152 0.92323 0.85849 0.80095 0.78747 0.79500 1.19121 1.19908 1.18241 1.19069 0.95413 0.88393 1.38046 0.89105 1.17762 0.91336 0.89440 0.99361 1.25343 0.97500 0.91962 0.98913 1.76856 1.03370 1.06146 1.26452 1.45921 1.07162 1.03639 1.56154 1.21214 0.96029 0.83538 0.94899 1.21546 0.95372 0.90900 1.20434 1.96526 1.95381 1.06700 1.98299 1.22110 0.97509 0.86737 1.07498 1.67336 1.18601 1.15409 1.07581 1.19904 0.82746 0.91245 1.22677 0.90034 0.76322 0.82645 0.82992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -18.62 10.31 55.54 0.57 -18.05 14 2 C 0.06 1.39 5.49 -17.31 -0.10 1.30 14 3 Si 0.93 17.55 29.56 -169.99 -5.02 12.53 14 4 H -0.27 -4.95 7.11 56.52 0.40 -4.55 14 5 H -0.27 -4.98 7.11 56.52 0.40 -4.58 14 6 H -0.26 -4.89 7.11 56.52 0.40 -4.49 14 7 C -0.38 -9.65 9.37 -38.10 -0.36 -10.01 14 8 H 0.09 2.31 7.84 -52.48 -0.41 1.89 14 9 C 0.03 0.85 5.97 -106.41 -0.64 0.21 14 10 C 0.05 1.20 10.87 -16.91 -0.18 1.01 14 11 N -0.31 -7.57 12.55 30.89 0.39 -7.18 14 12 N -0.35 -8.41 3.88 -11.63 -0.05 -8.45 14 13 C 0.18 3.59 11.05 -16.28 -0.18 3.41 14 14 C -0.19 -3.63 6.21 -39.75 -0.25 -3.87 14 15 Br -0.05 -0.74 33.72 -68.01 -2.29 -3.03 14 16 C 0.05 0.95 11.05 -16.95 -0.19 0.76 14 17 N -0.38 -9.22 10.45 -11.70 -0.12 -9.34 14 18 C 0.06 1.44 7.92 -155.53 -1.23 0.21 14 19 H 0.29 5.97 8.30 -40.82 -0.34 5.63 14 20 H 0.22 5.34 5.72 -52.49 -0.30 5.04 14 21 H 0.16 2.63 8.06 -52.49 -0.42 2.21 14 22 H 0.15 2.60 8.06 -52.49 -0.42 2.18 14 LS Contribution 227.69 15.07 3.43 3.43 Total: -1.00 -26.85 227.69 -6.90 -33.75 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -0.69 Total: 3.33 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: -3.12 Total: -6.98 kcal Atomic # 7 Polarization: -43.82 SS G_CDS: 0.79 Total: -43.03 kcal Atomic # 14 Polarization: 17.55 SS G_CDS: -5.02 Total: 12.53 kcal Atomic # 35 Polarization: -0.74 SS G_CDS: -2.29 Total: -3.03 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -26.85 -6.90 -33.75 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260722233.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.152 kcal (2) G-P(sol) polarization free energy of solvation -26.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds