Wall clock time and date at job start Mon Mar 30 2020 05:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31117 * 1 3 3 Si 1.86798 * 120.00603 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00682 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00432 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00143 * 3 2 1 7 7 C 1.39695 * 119.99408 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99767 * 179.97438 * 7 2 1 9 9 C 1.40709 * 120.00165 * 359.72345 * 7 2 1 10 10 C 1.41321 * 126.67690 * 0.02562 * 9 7 2 11 11 N 1.30585 * 108.73854 * 180.02562 * 10 9 7 12 12 N 1.39874 * 109.83865 * 0.02562 * 11 10 9 13 13 C 1.36516 * 132.13247 * 180.02562 * 12 11 10 14 14 C 1.35969 * 119.08942 * 179.97438 * 13 12 11 15 15 Br 1.89101 * 120.33498 * 179.97438 * 14 13 12 16 16 C 1.39970 * 119.32905 * 359.97438 * 14 13 12 17 17 N 1.31714 * 120.12279 * 359.97438 * 16 14 13 18 18 C 1.32901 * 120.92568 * 359.72625 * 17 16 14 19 19 H 0.97001 * 119.99364 * 359.97438 * 1 2 3 20 20 H 1.08001 * 125.63237 * 359.97438 * 10 9 7 21 21 H 1.08002 * 120.45314 * 359.95186 * 13 12 11 22 22 H 1.08001 * 119.93987 * 179.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3112 0.0000 0.0000 3 14 2.2453 1.6176 0.0000 4 1 2.4927 2.0464 -1.4000 5 1 1.4428 2.6525 0.7002 6 1 3.5429 1.4399 0.7000 7 6 2.0095 -1.2099 -0.0005 8 1 3.0896 -1.2099 -0.0010 9 6 1.3059 -2.4284 0.0048 10 6 -0.0977 -2.5926 0.0105 11 7 -0.3707 -3.8696 0.0149 12 7 0.8167 -4.6088 0.0130 13 6 1.0592 -5.9523 0.0154 14 6 2.3458 -6.3919 0.0119 15 35 2.7220 -8.2451 0.0158 16 6 3.3891 -5.4588 0.0055 17 7 3.1223 -4.1689 0.0022 18 6 1.8675 -3.7310 -0.0004 19 1 -0.4849 0.8401 0.0004 20 1 -0.8247 -1.7938 0.0119 21 1 0.2401 -6.6563 0.0203 22 1 4.4148 -5.7970 0.0031 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260722233.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:32 Heat of formation + Delta-G solvation = 93.906994 kcal Electronic energy + Delta-G solvation = -12330.818745 eV Core-core repulsion = 9933.429030 eV Total energy + Delta-G solvation = -2397.389715 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 266.970 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.52651 -38.60807 -35.92338 -34.43767 -32.80759 -30.97186 -29.84955 -26.90994 -25.41186 -23.36458 -22.10571 -19.65570 -18.26020 -17.93868 -16.68960 -16.53728 -16.47458 -15.05288 -14.79537 -14.00034 -13.69084 -13.58269 -13.20076 -13.02822 -12.93883 -12.46900 -12.02736 -11.61685 -11.56903 -11.41845 -10.97034 -10.44457 -9.91040 -9.03490 -8.73689 -6.11469 -0.07464 0.04514 0.41017 1.42229 1.43293 1.57491 1.79107 2.06158 2.21788 2.54850 3.32279 3.45880 3.59511 3.77740 4.36093 4.66524 4.76656 4.82042 5.25714 5.46100 5.67967 5.94997 6.28564 6.48187 6.76523 6.99548 7.22855 8.25302 Molecular weight = 266.97amu Principal moments of inertia in cm(-1) A = 0.060380 B = 0.005227 C = 0.004819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.614621 B = 5355.122485 C = 5808.888954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.026 3.974 3 Si 1.003 2.997 4 H -0.261 1.261 5 H -0.260 1.260 6 H -0.264 1.264 7 C -0.421 4.421 8 H 0.077 0.923 9 C -0.009 4.009 10 C 0.035 3.965 11 N -0.320 5.320 12 N -0.349 5.349 13 C 0.169 3.831 14 C -0.198 4.198 15 Br 0.005 6.995 16 C 0.085 3.915 17 N -0.426 5.426 18 C 0.040 3.960 19 H 0.298 0.702 20 H 0.221 0.779 21 H 0.190 0.810 22 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.499 -10.205 0.028 10.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.187 4.187 3 Si 0.823 3.177 4 H -0.186 1.186 5 H -0.184 1.184 6 H -0.188 1.188 7 C -0.453 4.453 8 H 0.095 0.905 9 C -0.020 4.020 10 C -0.148 4.148 11 N -0.143 5.143 12 N -0.130 5.130 13 C 0.035 3.965 14 C -0.285 4.285 15 Br 0.088 6.912 16 C -0.102 4.102 17 N -0.135 5.135 18 C -0.181 4.181 19 H 0.109 0.891 20 H 0.236 0.764 21 H 0.206 0.794 22 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 2.966 -10.643 0.042 11.048 hybrid contribution 0.060 0.889 -0.007 0.892 sum 3.026 -9.753 0.035 10.212 Atomic orbital electron populations 1.69393 1.08579 1.31220 1.36598 1.26836 0.95903 1.04583 0.91388 0.84857 0.78520 0.74725 0.79581 1.18590 1.18395 1.18762 1.19096 0.94873 0.89553 1.41731 0.90493 1.18135 0.92098 0.90417 1.01339 1.25292 0.97324 0.92294 0.99903 1.76779 1.03536 1.06003 1.28030 1.46222 1.06718 1.05001 1.55019 1.21992 0.97966 0.82495 0.94098 1.21865 0.94394 0.93951 1.18303 1.96602 1.95039 1.01499 1.98097 1.23030 0.99767 0.86012 1.01404 1.67433 1.17954 1.17378 1.10744 1.20163 0.83776 0.91699 1.22482 0.89059 0.76361 0.79352 0.79301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -39.64 10.31 21.80 0.22 -39.42 14 2 C 0.03 1.26 5.49 85.15 0.47 1.73 14 3 Si 1.00 36.64 29.56 68.60 2.03 38.67 14 4 H -0.26 -9.23 7.11 99.48 0.71 -8.53 14 5 H -0.26 -8.78 7.11 99.48 0.71 -8.07 14 6 H -0.26 -9.69 7.11 99.48 0.71 -8.99 14 7 C -0.42 -22.66 9.37 23.23 0.22 -22.44 14 8 H 0.08 4.15 7.84 -2.91 -0.02 4.13 14 9 C -0.01 -0.51 5.97 -21.02 -0.13 -0.63 14 10 C 0.03 1.82 10.87 85.64 0.93 2.75 14 11 N -0.32 -16.15 12.55 -56.18 -0.71 -16.86 14 12 N -0.35 -16.84 3.88 -190.71 -0.74 -17.57 14 13 C 0.17 6.42 11.05 83.44 0.92 7.34 14 14 C -0.20 -6.72 6.21 22.16 0.14 -6.58 14 15 Br 0.00 0.12 33.72 -20.37 -0.69 -0.57 14 16 C 0.08 3.20 11.05 85.13 0.94 4.14 14 17 N -0.43 -20.45 10.45 -190.94 -2.00 -22.44 14 18 C 0.04 2.10 7.92 134.29 1.06 3.16 14 19 H 0.30 12.59 8.30 -92.71 -0.77 11.82 14 20 H 0.22 11.25 5.72 -2.91 -0.02 11.23 14 21 H 0.19 5.77 8.06 -2.91 -0.02 5.75 14 22 H 0.19 5.63 8.06 -2.91 -0.02 5.60 14 Total: -1.00 -59.72 227.69 3.94 -55.77 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: 1.26 Total: 12.94 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: 4.55 Total: -10.52 kcal Atomic # 7 Polarization: -93.08 SS G_CDS: -3.22 Total: -96.29 kcal Atomic # 14 Polarization: 36.64 SS G_CDS: 2.03 Total: 38.67 kcal Atomic # 35 Polarization: 0.12 SS G_CDS: -0.69 Total: -0.57 kcal Total: -59.72 3.94 -55.77 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260722233.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.678 kcal (2) G-P(sol) polarization free energy of solvation -59.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds