Wall clock time and date at job start Mon Mar 30 2020 05:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30885 * 1 3 3 Si 1.86800 * 119.99731 * 2 1 4 4 H 1.48500 * 109.47234 * 269.99895 * 3 2 1 5 5 H 1.48496 * 109.47499 * 29.99993 * 3 2 1 6 6 H 1.48505 * 109.46899 * 150.00076 * 3 2 1 7 7 C 1.39927 * 119.99791 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99576 * 163.30545 * 7 2 1 9 9 C 1.40375 * 120.00646 * 343.31500 * 7 2 1 10 10 C 1.40741 * 120.97543 * 335.69516 * 9 7 2 11 11 C 1.39125 * 119.20194 * 179.97438 * 10 9 7 12 12 C 1.35715 * 121.26577 * 0.02562 * 11 10 9 13 13 N 1.36283 * 121.82021 * 0.02562 * 12 11 10 14 14 C 1.36322 * 133.69122 * 180.02562 * 13 12 11 15 15 Br 1.89102 * 126.31106 * 359.97438 * 14 13 12 16 16 N 1.30906 * 107.37237 * 179.97438 * 14 13 12 17 17 N 1.28709 * 110.22329 * 0.02562 * 16 14 13 18 18 C 1.31504 * 109.59528 * 359.97438 * 17 16 14 19 19 H 0.96998 * 119.99716 * 0.02562 * 1 2 3 20 20 H 1.08004 * 120.40475 * 359.95704 * 10 9 7 21 21 H 1.08000 * 119.36820 * 180.02562 * 11 10 9 22 22 H 1.07998 * 119.08944 * 179.97438 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.4903 2.0465 -1.4001 5 1 1.4403 2.6527 0.7000 6 1 3.5404 1.4402 0.7001 7 6 2.0084 -1.2118 0.0005 8 1 3.0543 -1.2316 -0.2681 9 6 1.3510 -2.4018 0.3501 10 6 0.2028 -2.3829 1.1638 11 6 -0.4199 -3.5843 1.4871 12 6 0.0590 -4.7703 1.0334 13 7 1.1674 -4.8429 0.2438 14 6 1.8450 -5.8742 -0.3356 15 35 1.4115 -7.7105 -0.2086 16 7 2.8510 -5.3590 -0.9959 17 7 2.8547 -4.0778 -0.8727 18 6 1.8422 -3.7041 -0.1213 19 1 -0.4849 0.8401 -0.0004 20 1 -0.1900 -1.4471 1.5332 21 1 -1.3014 -3.5729 2.1110 22 1 -0.4519 -5.6818 1.3063 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261100438.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:19 Heat of formation + Delta-G solvation = 79.624504 kcal Electronic energy + Delta-G solvation = -12462.925247 eV Core-core repulsion = 10064.916197 eV Total energy + Delta-G solvation = -2398.009050 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 266.970 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -44.05394 -38.53710 -36.44312 -34.07433 -32.69455 -31.82660 -29.77685 -27.59291 -24.43938 -23.81674 -22.72096 -19.84615 -18.37058 -17.84129 -17.35663 -16.82992 -16.10308 -15.28581 -15.08111 -13.96234 -13.63899 -13.24188 -13.03558 -12.85126 -12.62507 -12.38583 -12.32671 -12.04912 -11.84879 -11.53733 -11.34615 -10.87916 -10.20477 -9.05658 -8.92338 -6.55273 -0.22042 0.22752 0.45156 1.38666 1.43740 1.55482 1.76986 1.92733 2.14872 2.38986 3.21014 3.54939 3.83286 4.11293 4.53680 4.63235 4.84644 4.99997 5.25498 5.52607 5.67336 5.90001 6.18339 6.31860 6.46346 6.52135 7.58426 7.97017 Molecular weight = 266.97amu Principal moments of inertia in cm(-1) A = 0.053634 B = 0.006004 C = 0.005477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.928506 B = 4662.252313 C = 5111.220023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.035 3.965 3 Si 0.997 3.003 4 H -0.260 1.260 5 H -0.251 1.251 6 H -0.257 1.257 7 C -0.412 4.412 8 H 0.087 0.913 9 C 0.113 3.887 10 C -0.258 4.258 11 C -0.041 4.041 12 C -0.154 4.154 13 N -0.327 5.327 14 C 0.068 3.932 15 Br 0.104 6.896 16 N -0.268 5.268 17 N -0.325 5.325 18 C 0.149 3.851 19 H 0.306 0.694 20 H 0.135 0.865 21 H 0.163 0.837 22 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.212 -5.629 3.425 7.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.186 4.186 3 Si 0.815 3.185 4 H -0.185 1.185 5 H -0.175 1.175 6 H -0.181 1.181 7 C -0.439 4.439 8 H 0.105 0.895 9 C 0.107 3.893 10 C -0.283 4.283 11 C -0.062 4.062 12 C -0.276 4.276 13 N -0.003 5.003 14 C -0.269 4.269 15 Br 0.183 6.817 16 N -0.116 5.116 17 N -0.175 5.175 18 C -0.103 4.103 19 H 0.118 0.882 20 H 0.152 0.848 21 H 0.180 0.820 22 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -2.342 -6.193 2.556 7.097 hybrid contribution -0.717 0.641 0.500 1.084 sum -3.059 -5.553 3.056 7.037 Atomic orbital electron populations 1.69809 1.09031 1.32595 1.27822 1.26962 0.95796 1.04733 0.91151 0.84955 0.79142 0.74354 0.80037 1.18491 1.17454 1.18087 1.19839 0.98356 0.91257 1.34443 0.89485 1.18194 0.93460 0.86034 0.91661 1.21230 1.01679 0.98329 1.07035 1.20693 0.98662 0.90193 0.96629 1.21070 0.95092 1.01409 1.10042 1.43199 1.19975 1.06160 1.30922 1.26244 0.99540 0.91756 1.09349 1.96616 1.92741 0.94440 1.97905 1.74119 1.17053 1.02088 1.18376 1.74302 1.19711 1.03450 1.20040 1.24272 0.94447 0.90162 1.01460 0.88179 0.84760 0.81968 0.81555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -34.27 10.92 21.83 0.24 -34.03 14 2 C 0.04 1.56 5.18 85.24 0.44 2.00 14 3 Si 1.00 33.22 29.59 68.60 2.03 35.25 14 4 H -0.26 -8.57 7.11 99.48 0.71 -7.86 14 5 H -0.25 -7.55 7.11 99.48 0.71 -6.84 14 6 H -0.26 -8.67 7.11 99.48 0.71 -7.96 14 7 C -0.41 -20.75 9.09 23.20 0.21 -20.53 14 8 H 0.09 4.43 7.90 -2.91 -0.02 4.40 14 9 C 0.11 5.87 5.74 -19.86 -0.11 5.76 14 10 C -0.26 -11.98 8.80 23.09 0.20 -11.77 14 11 C -0.04 -1.63 9.90 21.90 0.22 -1.41 14 12 C -0.15 -6.22 10.92 83.42 0.91 -5.30 14 13 N -0.33 -15.36 2.96 -344.63 -1.02 -16.38 14 14 C 0.07 3.04 8.66 179.73 1.56 4.60 14 15 Br 0.10 3.31 34.10 -20.37 -0.69 2.61 14 16 N -0.27 -13.58 12.20 -55.20 -0.67 -14.25 14 17 N -0.33 -17.81 12.26 -51.50 -0.63 -18.44 14 18 C 0.15 7.94 7.91 135.97 1.07 9.01 14 19 H 0.31 11.80 8.30 -92.71 -0.77 11.03 14 20 H 0.13 6.20 6.19 -2.91 -0.02 6.18 14 21 H 0.16 4.89 8.06 -2.91 -0.02 4.87 14 22 H 0.17 5.47 8.06 -2.91 -0.02 5.44 14 Total: -1.00 -58.65 228.05 5.01 -53.63 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: 1.26 Total: 9.27 kcal Atomic # 6 Polarization: -22.16 SS G_CDS: 4.50 Total: -17.66 kcal Atomic # 7 Polarization: -81.02 SS G_CDS: -2.09 Total: -83.11 kcal Atomic # 14 Polarization: 33.22 SS G_CDS: 2.03 Total: 35.25 kcal Atomic # 35 Polarization: 3.31 SS G_CDS: -0.69 Total: 2.61 kcal Total: -58.65 5.01 -53.63 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261100438.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.256 kcal (2) G-P(sol) polarization free energy of solvation -58.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds