Wall clock time and date at job start Mon Mar 30 2020 05:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46294 * 111.00351 * 2 1 4 4 C 1.53921 * 112.00410 * 178.96516 * 3 2 1 5 5 C 1.51456 * 106.75750 * 55.97218 * 4 3 2 6 6 H 1.08993 * 109.87976 * 55.90923 * 5 4 3 7 7 C 1.52205 * 117.90855 * 183.35999 * 5 4 3 8 8 N 1.48726 * 105.75032 * 145.46501 * 7 5 4 9 9 C 1.46894 * 111.00063 * 118.54580 * 8 7 5 10 10 C 1.53004 * 109.47278 * 169.65687 * 9 8 7 11 11 C 1.52994 * 109.47349 * 179.97438 * 10 9 8 12 12 C 1.52996 * 109.47133 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.47375 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99822 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00063 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99771 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 120.00088 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.46685 * 90.00715 * 17 15 13 19 19 H 1.48497 * 109.47034 * 210.00583 * 17 15 13 20 20 H 1.48495 * 109.47231 * 330.00514 * 17 15 13 21 21 C 1.49145 * 108.27089 * 356.47009 * 8 7 5 22 22 C 1.52939 * 103.31699 * 335.59265 * 21 8 7 23 23 H 1.09004 * 111.20636 * 284.56823 * 22 21 8 24 24 C 1.47758 * 111.00309 * 232.26025 * 2 1 3 25 25 H 1.08999 * 109.47061 * 63.95405 * 1 2 3 26 26 H 1.08994 * 109.46976 * 183.95439 * 1 2 3 27 27 H 1.08998 * 109.47038 * 303.95959 * 1 2 3 28 28 H 1.09000 * 108.97712 * 58.31078 * 3 2 1 29 29 H 1.09003 * 108.90556 * 299.56978 * 3 2 1 30 30 H 1.08992 * 109.99707 * 296.66031 * 4 3 2 31 31 H 1.08999 * 109.99461 * 175.27976 * 4 3 2 32 32 H 1.09004 * 110.19023 * 264.53661 * 7 5 4 33 33 H 1.08999 * 110.19514 * 26.38662 * 7 5 4 34 34 H 1.08999 * 109.47199 * 289.65076 * 9 8 7 35 35 H 1.09000 * 109.47588 * 49.65911 * 9 8 7 36 36 H 1.09002 * 109.46740 * 300.00278 * 10 9 8 37 37 H 1.09007 * 109.46777 * 59.99328 * 10 9 8 38 38 H 1.08997 * 109.46950 * 299.99855 * 11 10 9 39 39 H 1.09001 * 109.46861 * 60.00098 * 11 10 9 40 40 H 1.09001 * 109.47360 * 300.00263 * 12 11 10 41 41 H 1.09002 * 109.47536 * 59.99661 * 12 11 10 42 42 H 0.97007 * 119.99813 * 179.97438 * 16 15 13 43 43 H 1.09003 * 110.65611 * 217.13531 * 21 8 7 44 44 H 1.08998 * 110.79474 * 94.11735 * 21 8 7 45 45 H 1.09002 * 109.98128 * 304.22960 * 24 2 1 46 46 H 1.09003 * 109.97627 * 65.47634 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9933 1.3657 0.0000 4 6 3.5321 1.3927 0.0258 5 6 4.0030 0.5812 -1.1631 6 1 3.5680 0.9797 -2.0796 7 6 5.5011 0.3756 -1.3370 8 7 5.6575 -0.9864 -1.9135 9 6 6.2981 -0.9287 -3.2341 10 6 6.6755 -2.3428 -3.6802 11 6 7.3422 -2.2828 -5.0559 12 6 7.7200 -3.6968 -5.5016 13 6 8.3773 -3.6377 -6.8564 14 1 8.5117 -2.6867 -7.3504 15 6 8.8062 -4.7977 -7.4658 16 7 9.3793 -4.7461 -8.6484 17 14 8.5731 -6.4426 -6.6118 18 1 7.2603 -7.0192 -6.9982 19 1 9.6598 -7.3696 -7.0180 20 1 8.6139 -6.2466 -5.1404 21 6 4.3077 -1.6149 -2.0012 22 6 3.5048 -0.8760 -0.9295 23 1 3.7735 -1.2177 0.0701 24 6 1.9986 -0.8443 -1.0908 25 1 -0.3633 0.4512 -0.9233 26 1 -0.3633 -1.0252 0.0709 27 1 -0.3633 0.5741 0.8524 28 1 1.6149 1.8907 0.8771 29 1 1.6448 1.8779 -0.8969 30 1 3.8973 0.9457 0.9503 31 1 3.8883 2.4193 -0.0592 32 1 5.9065 1.1222 -2.0200 33 1 6.0036 0.4357 -0.3716 34 1 5.6063 -0.4930 -3.9549 35 1 7.1966 -0.3144 -3.1756 36 1 7.3673 -2.7787 -2.9594 37 1 5.7769 -2.9572 -3.7386 38 1 6.6500 -1.8471 -5.7764 39 1 8.2406 -1.6683 -4.9977 40 1 8.4124 -4.1321 -4.7810 41 1 6.8219 -4.3117 -5.5596 42 1 9.6814 -5.5623 -9.0770 43 1 4.3637 -2.6794 -1.7738 44 1 3.8703 -1.4562 -2.9868 45 1 1.5941 -1.8533 -1.0107 46 1 1.7351 -0.4133 -2.0568 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385214161.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:50 Heat of formation + Delta-G solvation = -7.492446 kcal Electronic energy + Delta-G solvation = -20456.911348 eV Core-core repulsion = 17573.434528 eV Total energy + Delta-G solvation = -2883.476820 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.49426 -37.51819 -35.03704 -33.21979 -32.20411 -31.47117 -29.25603 -27.84808 -26.60286 -24.89182 -23.12572 -21.95761 -21.41292 -20.49426 -20.14322 -19.94087 -16.62535 -15.89759 -15.68654 -15.47789 -15.32050 -15.19893 -14.64782 -14.16235 -13.87948 -13.73164 -13.25202 -13.07897 -12.68628 -12.66228 -12.35405 -12.32293 -12.07385 -11.92958 -11.68282 -11.46564 -11.19348 -11.02698 -10.91494 -10.76497 -10.68186 -10.48458 -10.21187 -9.82318 -9.63178 -9.43200 -9.10786 -8.62856 -8.49164 -8.30892 -5.99982 -3.97347 3.34434 3.41557 3.45883 3.46885 3.90085 4.11972 4.45668 4.48500 4.49880 4.81565 4.94735 4.97139 5.05167 5.16494 5.20354 5.25260 5.29307 5.34269 5.39074 5.41846 5.42379 5.49976 5.50061 5.54312 5.63264 5.70721 5.78672 5.86828 5.88394 5.98532 6.09600 6.16173 6.20412 6.43283 6.68413 6.71004 6.77784 6.82838 6.92126 6.97009 7.16963 7.38986 7.52241 7.85637 8.59578 9.05367 9.63223 11.13671 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.036788 B = 0.003021 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.926942 B = 9265.963569 C = 9663.771609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.557 5.557 3 C 0.064 3.936 4 C -0.101 4.101 5 C -0.121 4.121 6 H 0.067 0.933 7 C 0.051 3.949 8 N -0.527 5.527 9 C 0.051 3.949 10 C -0.114 4.114 11 C -0.102 4.102 12 C -0.014 4.014 13 C -0.519 4.519 14 H 0.070 0.930 15 C 0.064 3.936 16 N -0.906 5.906 17 Si 0.881 3.119 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.264 1.264 21 C 0.052 3.948 22 C -0.099 4.099 23 H 0.094 0.906 24 C 0.074 3.926 25 H 0.023 0.977 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.027 0.973 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.078 0.922 34 H 0.031 0.969 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.054 0.946 38 H 0.049 0.951 39 H 0.052 0.948 40 H 0.015 0.985 41 H 0.009 0.991 42 H 0.262 0.738 43 H 0.083 0.917 44 H 0.049 0.951 45 H 0.079 0.921 46 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.788 12.303 19.636 28.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.282 5.282 3 C -0.064 4.064 4 C -0.140 4.140 5 C -0.141 4.141 6 H 0.085 0.915 7 C -0.077 4.077 8 N -0.251 5.251 9 C -0.077 4.077 10 C -0.152 4.152 11 C -0.140 4.140 12 C -0.051 4.051 13 C -0.557 4.557 14 H 0.088 0.912 15 C -0.137 4.137 16 N -0.546 5.546 17 Si 0.708 3.292 18 H -0.204 1.204 19 H -0.215 1.215 20 H -0.189 1.189 21 C -0.076 4.076 22 C -0.119 4.119 23 H 0.112 0.888 24 C -0.053 4.053 25 H 0.042 0.958 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.045 0.955 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.049 0.951 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.034 0.966 41 H 0.028 0.972 42 H 0.072 0.928 43 H 0.101 0.899 44 H 0.067 0.933 45 H 0.097 0.903 46 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -16.217 11.703 20.221 28.440 hybrid contribution -0.892 -0.021 -1.111 1.425 sum -17.110 11.682 19.110 28.185 Atomic orbital electron populations 1.22286 0.86888 1.02323 1.00314 1.61041 1.07396 1.12964 1.46751 1.21995 0.95407 0.88569 1.00414 1.21365 0.94168 1.00034 0.98401 1.22151 0.96635 0.96654 0.98652 0.91493 1.22500 0.94435 0.90162 1.00562 1.64434 1.19352 1.17444 1.23833 1.22422 0.98258 0.98987 0.88015 1.21653 1.00656 0.94722 0.98199 1.21425 0.99089 0.99850 0.93609 1.19563 0.95963 0.92659 0.96908 1.21199 1.38057 0.95101 1.01358 0.91171 1.25054 0.94704 0.99212 0.94707 1.69927 1.41158 1.28286 1.15202 0.86755 0.77803 0.83878 0.80740 1.20374 1.21456 1.18905 1.22750 0.88095 0.99542 0.97204 1.22065 0.93739 0.95243 1.00825 0.88795 1.21800 0.94457 0.97468 0.91625 0.95841 0.91236 0.91459 0.90806 0.95514 0.90579 0.91186 0.92446 0.90381 0.95055 0.90967 0.91682 0.92731 0.93204 0.92879 0.96630 0.97242 0.92828 0.89863 0.93301 0.90254 0.94659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.61 60.06 0.58 0.79 16 2 N -0.56 -4.81 4.77 -243.02 -1.16 -5.97 16 3 C 0.06 0.50 5.42 -3.67 -0.02 0.48 16 4 C -0.10 -0.79 5.86 -27.03 -0.16 -0.95 16 5 C -0.12 -1.14 2.33 -90.33 -0.21 -1.35 16 6 H 0.07 0.68 7.95 -51.93 -0.41 0.27 16 7 C 0.05 0.54 6.58 -3.22 -0.02 0.52 16 8 N -0.53 -6.75 5.22 -231.62 -1.21 -7.96 16 9 C 0.05 0.72 4.63 -3.83 -0.02 0.71 16 10 C -0.11 -1.91 5.27 -26.73 -0.14 -2.05 16 11 C -0.10 -2.06 5.15 -26.74 -0.14 -2.19 16 12 C -0.01 -0.33 4.04 -27.88 -0.11 -0.45 16 13 C -0.52 -15.25 9.66 -34.44 -0.33 -15.58 16 14 H 0.07 2.20 7.99 -52.49 -0.42 1.79 16 15 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 16 N -0.91 -28.58 13.96 55.43 0.77 -27.80 16 17 Si 0.88 22.29 27.47 -169.99 -4.67 17.62 16 18 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 20 H -0.26 -6.45 6.54 56.52 0.37 -6.08 16 21 C 0.05 0.60 5.47 -2.61 -0.01 0.59 16 22 C -0.10 -0.98 2.61 -89.93 -0.23 -1.22 16 23 H 0.09 1.02 8.04 -51.93 -0.42 0.60 16 24 C 0.07 0.67 5.31 -4.10 -0.02 0.65 16 25 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.40 8.13 -51.93 -0.42 -0.02 16 28 H 0.07 0.51 8.13 -51.93 -0.42 0.08 16 29 H 0.03 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.08 0.62 8.06 -51.93 -0.42 0.21 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.60 7.56 -51.93 -0.39 0.21 16 33 H 0.08 0.80 8.09 -51.93 -0.42 0.38 16 34 H 0.03 0.44 7.85 -51.93 -0.41 0.03 16 35 H 0.07 1.00 8.00 -51.93 -0.42 0.59 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.05 0.90 7.52 -51.92 -0.39 0.51 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 41 H 0.01 0.23 7.57 -51.93 -0.39 -0.17 16 42 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 43 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.05 0.59 7.67 -51.93 -0.40 0.19 16 45 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.04 0.33 8.00 -51.93 -0.42 -0.08 16 LS Contribution 348.93 15.07 5.26 5.26 Total: -1.00 -31.12 348.93 -11.04 -42.16 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -9.09 Total: -5.06 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: -0.94 Total: -18.24 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: -1.60 Total: -41.73 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.67 Total: 17.62 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.12 -11.04 -42.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385214161.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.664 kcal (2) G-P(sol) polarization free energy of solvation -31.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds