Wall clock time and date at job start Mon Mar 30 2020 05:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46294 * 111.00351 * 2 1 4 4 C 1.53921 * 112.00410 * 178.96516 * 3 2 1 5 5 C 1.51456 * 106.75750 * 55.97218 * 4 3 2 6 6 H 1.08993 * 109.87976 * 55.90923 * 5 4 3 7 7 C 1.52205 * 117.90855 * 183.35999 * 5 4 3 8 8 N 1.48726 * 105.75032 * 145.46501 * 7 5 4 9 9 C 1.46894 * 111.00063 * 118.54580 * 8 7 5 10 10 C 1.53004 * 109.47278 * 169.65687 * 9 8 7 11 11 C 1.52994 * 109.47349 * 179.97438 * 10 9 8 12 12 C 1.52996 * 109.47133 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.47375 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99822 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00063 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99771 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 120.00088 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.46685 * 90.00715 * 17 15 13 19 19 H 1.48497 * 109.47034 * 210.00583 * 17 15 13 20 20 H 1.48495 * 109.47231 * 330.00514 * 17 15 13 21 21 C 1.49145 * 108.27089 * 356.47009 * 8 7 5 22 22 C 1.52939 * 103.31699 * 335.59265 * 21 8 7 23 23 H 1.09004 * 111.20636 * 284.56823 * 22 21 8 24 24 C 1.47758 * 111.00309 * 232.26025 * 2 1 3 25 25 H 1.08999 * 109.47061 * 63.95405 * 1 2 3 26 26 H 1.08994 * 109.46976 * 183.95439 * 1 2 3 27 27 H 1.08998 * 109.47038 * 303.95959 * 1 2 3 28 28 H 1.09000 * 108.97712 * 58.31078 * 3 2 1 29 29 H 1.09003 * 108.90556 * 299.56978 * 3 2 1 30 30 H 1.08992 * 109.99707 * 296.66031 * 4 3 2 31 31 H 1.08999 * 109.99461 * 175.27976 * 4 3 2 32 32 H 1.09004 * 110.19023 * 264.53661 * 7 5 4 33 33 H 1.08999 * 110.19514 * 26.38662 * 7 5 4 34 34 H 1.08999 * 109.47199 * 289.65076 * 9 8 7 35 35 H 1.09000 * 109.47588 * 49.65911 * 9 8 7 36 36 H 1.09002 * 109.46740 * 300.00278 * 10 9 8 37 37 H 1.09007 * 109.46777 * 59.99328 * 10 9 8 38 38 H 1.08997 * 109.46950 * 299.99855 * 11 10 9 39 39 H 1.09001 * 109.46861 * 60.00098 * 11 10 9 40 40 H 1.09001 * 109.47360 * 300.00263 * 12 11 10 41 41 H 1.09002 * 109.47536 * 59.99661 * 12 11 10 42 42 H 0.97007 * 119.99813 * 179.97438 * 16 15 13 43 43 H 1.09003 * 110.65611 * 217.13531 * 21 8 7 44 44 H 1.08998 * 110.79474 * 94.11735 * 21 8 7 45 45 H 1.09002 * 109.98128 * 304.22960 * 24 2 1 46 46 H 1.09003 * 109.97627 * 65.47634 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9933 1.3657 0.0000 4 6 3.5321 1.3927 0.0258 5 6 4.0030 0.5812 -1.1631 6 1 3.5680 0.9797 -2.0796 7 6 5.5011 0.3756 -1.3370 8 7 5.6575 -0.9864 -1.9135 9 6 6.2981 -0.9287 -3.2341 10 6 6.6755 -2.3428 -3.6802 11 6 7.3422 -2.2828 -5.0559 12 6 7.7200 -3.6968 -5.5016 13 6 8.3773 -3.6377 -6.8564 14 1 8.5117 -2.6867 -7.3504 15 6 8.8062 -4.7977 -7.4658 16 7 9.3793 -4.7461 -8.6484 17 14 8.5731 -6.4426 -6.6118 18 1 7.2603 -7.0192 -6.9982 19 1 9.6598 -7.3696 -7.0180 20 1 8.6139 -6.2466 -5.1404 21 6 4.3077 -1.6149 -2.0012 22 6 3.5048 -0.8760 -0.9295 23 1 3.7735 -1.2177 0.0701 24 6 1.9986 -0.8443 -1.0908 25 1 -0.3633 0.4512 -0.9233 26 1 -0.3633 -1.0252 0.0709 27 1 -0.3633 0.5741 0.8524 28 1 1.6149 1.8907 0.8771 29 1 1.6448 1.8779 -0.8969 30 1 3.8973 0.9457 0.9503 31 1 3.8883 2.4193 -0.0592 32 1 5.9065 1.1222 -2.0200 33 1 6.0036 0.4357 -0.3716 34 1 5.6063 -0.4930 -3.9549 35 1 7.1966 -0.3144 -3.1756 36 1 7.3673 -2.7787 -2.9594 37 1 5.7769 -2.9572 -3.7386 38 1 6.6500 -1.8471 -5.7764 39 1 8.2406 -1.6683 -4.9977 40 1 8.4124 -4.1321 -4.7810 41 1 6.8219 -4.3117 -5.5596 42 1 9.6814 -5.5623 -9.0770 43 1 4.3637 -2.6794 -1.7738 44 1 3.8703 -1.4562 -2.9868 45 1 1.5941 -1.8533 -1.0107 46 1 1.7351 -0.4133 -2.0568 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385214161.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:49 Heat of formation + Delta-G solvation = -27.685929 kcal Electronic energy + Delta-G solvation = -20457.787003 eV Core-core repulsion = 17573.434528 eV Total energy + Delta-G solvation = -2884.352475 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.28335 -38.38166 -36.53477 -34.77014 -33.54394 -32.51910 -30.63244 -28.85237 -27.55000 -26.15382 -24.27553 -22.73978 -22.55433 -21.72970 -21.43931 -20.89856 -18.85973 -16.72470 -16.56804 -16.49273 -16.26500 -16.17282 -15.93045 -15.55979 -14.98464 -14.73620 -14.51756 -14.21530 -14.04351 -13.68847 -13.56939 -13.32038 -13.15391 -12.92686 -12.79142 -12.73372 -12.40693 -12.22874 -12.08859 -11.92060 -11.74182 -11.67612 -11.52158 -11.35868 -11.31805 -11.12098 -10.94395 -10.76563 -9.30045 -9.25403 -8.30030 -6.34104 1.35552 1.37832 1.50668 2.36501 2.80666 2.96222 3.05295 3.37006 3.73819 3.75266 4.05181 4.11271 4.18281 4.26697 4.33468 4.41656 4.44567 4.48264 4.53529 4.55482 4.58996 4.64788 4.68500 4.71906 4.77303 4.87038 4.90064 4.91041 4.97721 5.00869 5.07856 5.12547 5.14826 5.16416 5.23087 5.26780 5.44338 5.57151 5.64421 5.67997 5.95323 6.08082 6.10870 6.16672 6.28974 6.73999 7.30746 8.86975 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.036788 B = 0.003021 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.926942 B = 9265.963569 C = 9663.771609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.567 5.567 3 C 0.063 3.937 4 C -0.096 4.096 5 C -0.115 4.115 6 H 0.059 0.941 7 C 0.051 3.949 8 N -0.538 5.538 9 C 0.059 3.941 10 C -0.102 4.102 11 C -0.094 4.094 12 C -0.012 4.012 13 C -0.535 4.535 14 H 0.030 0.970 15 C 0.001 3.999 16 N -0.953 5.953 17 Si 0.954 3.046 18 H -0.266 1.266 19 H -0.283 1.283 20 H -0.247 1.247 21 C 0.051 3.949 22 C -0.091 4.091 23 H 0.087 0.913 24 C 0.077 3.923 25 H 0.022 0.978 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.024 0.976 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.059 0.941 33 H 0.084 0.916 34 H 0.031 0.969 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.044 0.956 39 H 0.047 0.953 40 H 0.018 0.982 41 H 0.017 0.983 42 H 0.266 0.734 43 H 0.080 0.920 44 H 0.044 0.956 45 H 0.083 0.917 46 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.078 12.049 21.909 30.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.292 5.292 3 C -0.065 4.065 4 C -0.135 4.135 5 C -0.134 4.134 6 H 0.078 0.922 7 C -0.076 4.076 8 N -0.262 5.262 9 C -0.069 4.069 10 C -0.140 4.140 11 C -0.133 4.133 12 C -0.049 4.049 13 C -0.573 4.573 14 H 0.048 0.952 15 C -0.196 4.196 16 N -0.594 5.594 17 Si 0.777 3.223 18 H -0.191 1.191 19 H -0.209 1.209 20 H -0.170 1.170 21 C -0.077 4.077 22 C -0.111 4.111 23 H 0.105 0.895 24 C -0.051 4.051 25 H 0.041 0.959 26 H 0.092 0.908 27 H 0.096 0.904 28 H 0.104 0.896 29 H 0.042 0.958 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.049 0.951 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.037 0.963 41 H 0.035 0.965 42 H 0.075 0.925 43 H 0.098 0.902 44 H 0.062 0.938 45 H 0.101 0.899 46 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -17.523 11.471 22.511 30.747 hybrid contribution -0.473 0.136 -1.874 1.937 sum -17.995 11.607 20.637 29.740 Atomic orbital electron populations 1.22333 0.85892 1.02843 1.00757 1.61079 1.08400 1.13337 1.46359 1.22041 0.95298 0.88270 1.00852 1.21348 0.94215 1.00492 0.97397 1.22088 0.95634 0.96600 0.99086 0.92231 1.22537 0.95406 0.89037 1.00662 1.64391 1.20096 1.18955 1.22738 1.22235 0.98575 0.97171 0.88898 1.21468 1.00278 0.96557 0.95679 1.21294 0.99149 0.97115 0.95707 1.19531 0.95684 0.95456 0.94222 1.21566 1.38552 0.93706 1.03455 0.95207 1.26080 0.94222 1.03864 0.95404 1.70081 1.42487 1.29752 1.17098 0.85601 0.78283 0.78146 0.80290 1.19057 1.20854 1.17012 1.22754 0.87884 0.99535 0.97553 1.21943 0.94201 0.95213 0.99696 0.89456 1.21744 0.93819 0.97879 0.91623 0.95900 0.90840 0.90378 0.89556 0.95822 0.90709 0.89826 0.92208 0.89775 0.95112 0.90746 0.91857 0.92361 0.93682 0.93387 0.96330 0.96513 0.92493 0.90182 0.93800 0.89880 0.95235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.61 127.69 1.23 1.58 16 2 N -0.57 -8.75 4.77 -922.79 -4.41 -13.16 16 3 C 0.06 0.86 5.42 86.73 0.47 1.33 16 4 C -0.10 -1.30 5.86 30.40 0.18 -1.13 16 5 C -0.11 -1.96 2.33 -10.61 -0.02 -1.99 16 6 H 0.06 1.13 7.95 -2.39 -0.02 1.11 16 7 C 0.05 0.99 6.58 85.69 0.56 1.56 16 8 N -0.54 -12.98 5.22 -886.71 -4.63 -17.61 16 9 C 0.06 1.61 4.63 86.31 0.40 2.01 16 10 C -0.10 -3.26 5.27 30.59 0.16 -3.10 16 11 C -0.09 -3.79 5.15 30.59 0.16 -3.63 16 12 C -0.01 -0.56 4.04 29.85 0.12 -0.44 16 13 C -0.53 -32.01 9.66 25.60 0.25 -31.76 16 14 H 0.03 1.95 7.99 -2.91 -0.02 1.93 16 15 C 0.00 0.04 5.47 84.65 0.46 0.50 16 16 N -0.95 -61.32 13.96 21.45 0.30 -61.02 16 17 Si 0.95 45.47 27.47 68.60 1.88 47.35 16 18 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 19 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 20 H -0.25 -10.96 6.54 99.48 0.65 -10.31 16 21 C 0.05 1.11 5.47 85.85 0.47 1.58 16 22 C -0.09 -1.67 2.61 -10.35 -0.03 -1.70 16 23 H 0.09 1.75 8.04 -2.39 -0.02 1.73 16 24 C 0.08 1.28 5.31 85.65 0.45 1.74 16 25 H 0.02 0.28 8.14 -2.39 -0.02 0.26 16 26 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.08 0.76 8.13 -2.39 -0.02 0.75 16 28 H 0.09 0.96 8.13 -2.39 -0.02 0.95 16 29 H 0.02 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.07 1.06 8.06 -2.39 -0.02 1.04 16 31 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.06 1.15 7.56 -2.38 -0.02 1.13 16 33 H 0.08 1.56 8.09 -2.39 -0.02 1.54 16 34 H 0.03 0.83 7.85 -2.39 -0.02 0.82 16 35 H 0.07 1.97 8.00 -2.39 -0.02 1.95 16 36 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.06 1.82 7.52 -2.38 -0.02 1.80 16 38 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.02 0.88 7.20 -2.39 -0.02 0.87 16 41 H 0.02 0.78 7.57 -2.39 -0.02 0.76 16 42 H 0.27 15.90 8.31 -92.70 -0.77 15.13 16 43 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.04 1.01 7.67 -2.39 -0.02 0.99 16 45 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.03 0.52 8.00 -2.39 -0.02 0.51 16 Total: -1.00 -66.77 348.93 -1.15 -67.93 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: 0.83 Total: 9.95 kcal Atomic # 6 Polarization: -38.30 SS G_CDS: 4.86 Total: -33.44 kcal Atomic # 7 Polarization: -83.05 SS G_CDS: -8.73 Total: -91.79 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.88 Total: 47.35 kcal Total: -66.77 -1.15 -67.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385214161.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.243 kcal (2) G-P(sol) polarization free energy of solvation -66.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds