Wall clock time and date at job start Mon Mar 30 2020 05:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30776 * 1 3 3 Si 1.86805 * 120.00151 * 2 1 4 4 H 1.48510 * 109.47042 * 240.00202 * 3 2 1 5 5 H 1.48495 * 109.47120 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47228 * 120.00029 * 3 2 1 7 7 C 1.40024 * 120.00014 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99960 * 179.97438 * 7 2 1 9 9 C 1.41018 * 119.99982 * 359.97438 * 7 2 1 10 10 N 1.33875 * 119.85567 * 359.97438 * 9 7 2 11 11 C 1.31558 * 121.65744 * 180.02562 * 10 9 7 12 12 F 1.35091 * 119.40977 * 179.97438 * 11 10 9 13 13 C 1.39145 * 121.18474 * 359.71644 * 11 10 9 14 14 C 1.38940 * 119.57517 * 0.55695 * 13 11 10 15 15 O 1.35843 * 120.76424 * 179.72674 * 14 13 11 16 16 C 1.39688 * 118.46988 * 359.45980 * 14 13 11 17 17 O 1.35678 * 120.59110 * 180.25467 * 16 14 13 18 18 C 1.42897 * 117.00373 * 89.99110 * 17 16 14 19 19 F 1.39909 * 109.46800 * 60.00650 * 18 17 16 20 20 F 1.39895 * 109.47170 * 180.02562 * 18 17 16 21 21 F 1.39898 * 109.47577 * 300.00662 * 18 17 16 22 22 H 0.97007 * 119.99731 * 0.02562 * 1 2 3 23 23 H 1.07997 * 120.20977 * 180.28750 * 13 11 10 24 24 H 0.96700 * 114.00288 * 269.72534 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2418 1.6178 0.0000 4 1 3.0956 1.6964 -1.2126 5 1 1.2769 2.7465 -0.0006 6 1 3.0956 1.6964 1.2125 7 6 2.0079 -1.2126 -0.0005 8 1 3.0879 -1.2126 -0.0010 9 6 1.3028 -2.4339 -0.0005 10 7 -0.0360 -2.4305 0.0005 11 6 -0.7292 -3.5486 0.0010 12 9 -2.0790 -3.4922 0.0026 13 6 -0.0973 -4.7882 -0.0053 14 6 1.2907 -4.8504 -0.0007 15 8 1.9327 -6.0476 -0.0012 16 6 2.0109 -3.6534 -0.0012 17 8 3.3676 -3.6639 -0.0019 18 6 4.0157 -3.6693 -1.2755 19 9 3.6484 -2.5241 -1.9904 20 9 5.4027 -3.6805 -1.0929 21 9 3.6306 -4.8087 -1.9900 22 1 -0.4850 0.8401 -0.0004 23 1 -0.6819 -5.6962 -0.0095 24 1 2.1192 -6.3942 0.8821 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396050148.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:22 Heat of formation + Delta-G solvation = -272.996515 kcal Electronic energy + Delta-G solvation = -20987.112057 eV Core-core repulsion = 16785.754032 eV Total energy + Delta-G solvation = -4201.358026 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.030 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.99096 -49.76672 -48.78022 -48.63651 -41.07829 -38.47711 -38.19458 -35.61717 -31.88098 -31.09370 -28.08944 -26.30886 -23.96245 -23.58245 -20.54440 -20.36379 -19.84657 -19.79509 -18.98082 -17.95064 -17.52500 -17.02475 -16.74613 -16.61104 -15.66023 -15.57587 -15.45949 -15.14435 -14.99807 -14.87995 -14.86869 -14.67603 -14.57008 -14.14684 -13.53769 -13.48701 -13.14169 -12.76382 -12.74164 -12.10007 -11.51372 -11.31513 -10.24407 -10.04684 -9.72542 -8.63734 -6.92496 -0.01154 0.55506 1.34182 1.37839 1.49203 1.52094 2.12490 2.32380 2.51319 2.90832 3.25394 3.31078 3.37262 3.55227 4.13543 4.42384 4.60731 4.86921 4.92792 5.25820 5.57956 5.72208 5.91152 6.32478 6.52616 6.83280 7.50880 8.09730 Molecular weight = 267.03amu Principal moments of inertia in cm(-1) A = 0.015175 B = 0.011890 C = 0.007120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.681915 B = 2354.411782 C = 3931.870404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.720 5.720 2 C 0.019 3.981 3 Si 0.990 3.010 4 H -0.256 1.256 5 H -0.260 1.260 6 H -0.250 1.250 7 C -0.389 4.389 8 H 0.102 0.898 9 C 0.249 3.751 10 N -0.535 5.535 11 C 0.345 3.655 12 F -0.129 7.129 13 C -0.357 4.357 14 C 0.225 3.775 15 O -0.491 6.491 16 C -0.174 4.174 17 O -0.289 6.289 18 C 0.567 3.433 19 F -0.181 7.181 20 F -0.147 7.147 21 F -0.181 7.181 22 H 0.294 0.706 23 H 0.151 0.849 24 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.540 -2.833 0.557 5.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.339 5.339 2 C -0.207 4.207 3 Si 0.808 3.192 4 H -0.180 1.180 5 H -0.184 1.184 6 H -0.174 1.174 7 C -0.417 4.417 8 H 0.120 0.880 9 C 0.128 3.872 10 N -0.256 5.256 11 C 0.179 3.821 12 F -0.108 7.108 13 C -0.382 4.382 14 C 0.174 3.826 15 O -0.305 6.305 16 C -0.222 4.222 17 O -0.208 6.208 18 C 0.478 3.522 19 F -0.163 7.163 20 F -0.128 7.128 21 F -0.163 7.163 22 H 0.105 0.895 23 H 0.169 0.831 24 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 4.062 -1.848 0.076 4.463 hybrid contribution 0.307 -0.374 0.052 0.486 sum 4.369 -2.221 0.128 4.903 Atomic orbital electron populations 1.70165 1.09137 1.31007 1.23593 1.27209 0.95839 1.05139 0.92531 0.85112 0.78870 0.74421 0.80777 1.18030 1.18358 1.17401 1.20146 0.95636 0.89686 1.36211 0.87961 1.18467 0.86169 0.92449 0.90149 1.68184 1.07961 1.26851 1.22621 1.18646 0.78198 0.90846 0.94451 1.91489 1.28753 1.97258 1.93343 1.21285 0.93733 0.97369 1.25777 1.18381 0.89340 0.83895 0.91003 1.84612 1.78022 1.32519 1.35322 1.19676 0.79801 0.93374 1.29384 1.86549 1.19324 1.92437 1.22525 1.20952 0.76805 0.73980 0.80443 1.93252 1.91600 1.51746 1.79711 1.93185 1.27908 1.96413 1.95304 1.93211 1.91209 1.52294 1.79590 0.89481 0.83089 0.72436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -35.67 11.45 21.84 0.25 -35.42 14 2 C 0.02 0.90 5.50 85.28 0.47 1.37 14 3 Si 0.99 34.54 29.56 68.60 2.03 36.57 14 4 H -0.26 -8.81 7.11 99.48 0.71 -8.11 14 5 H -0.26 -8.47 7.11 99.48 0.71 -7.76 14 6 H -0.25 -8.37 7.11 99.48 0.71 -7.66 14 7 C -0.39 -19.47 7.92 23.38 0.19 -19.28 14 8 H 0.10 4.88 6.70 -2.91 -0.02 4.87 14 9 C 0.25 12.94 6.45 40.20 0.26 13.20 14 10 N -0.53 -28.47 7.86 -189.97 -1.49 -29.96 14 11 C 0.34 16.45 8.40 84.95 0.71 17.16 14 12 F -0.13 -5.81 17.28 44.97 0.78 -5.03 14 13 C -0.36 -14.92 10.04 22.66 0.23 -14.70 14 14 C 0.23 9.44 6.54 22.79 0.15 9.59 14 15 O -0.49 -16.85 12.93 -79.51 -1.03 -17.87 14 16 C -0.17 -8.16 5.39 23.30 0.13 -8.03 14 17 O -0.29 -12.68 9.27 -77.69 -0.72 -13.40 14 18 C 0.57 23.00 3.80 113.37 0.43 23.43 14 19 F -0.18 -7.80 15.41 44.97 0.69 -7.11 14 20 F -0.15 -5.22 17.53 44.97 0.79 -4.44 14 21 F -0.18 -7.28 16.55 44.97 0.74 -6.54 14 22 H 0.29 12.94 8.30 -92.70 -0.77 12.17 14 23 H 0.15 5.36 8.06 -2.91 -0.02 5.34 14 24 H 0.42 9.61 9.06 -74.06 -0.67 8.94 14 Total: -1.00 -57.90 245.33 5.24 -52.66 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: 0.64 Total: 7.80 kcal Atomic # 6 Polarization: 20.18 SS G_CDS: 2.56 Total: 22.74 kcal Atomic # 7 Polarization: -64.14 SS G_CDS: -1.24 Total: -65.38 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: -1.75 Total: -31.28 kcal Atomic # 9 Polarization: -26.12 SS G_CDS: 3.00 Total: -23.11 kcal Atomic # 14 Polarization: 34.54 SS G_CDS: 2.03 Total: 36.57 kcal Total: -57.90 5.24 -52.66 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396050148.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -220.334 kcal (2) G-P(sol) polarization free energy of solvation -57.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -278.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -272.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds