Wall clock time and date at job start Mon Mar 30 2020 05:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30783 * 1 3 3 Si 1.86804 * 119.99847 * 2 1 4 4 H 1.48506 * 109.46670 * 89.99941 * 3 2 1 5 5 H 1.48498 * 109.47053 * 210.00006 * 3 2 1 6 6 H 1.48504 * 109.47132 * 330.00231 * 3 2 1 7 7 C 1.40021 * 120.00130 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99842 * 154.54994 * 7 2 1 9 9 C 1.41241 * 120.00107 * 334.55105 * 7 2 1 10 10 C 1.41029 * 121.02617 * 335.32268 * 9 7 2 11 11 C 1.38043 * 118.95828 * 179.75335 * 10 9 7 12 12 O 1.35769 * 119.45129 * 180.27206 * 11 10 9 13 13 C 1.42908 * 117.00026 * 180.26198 * 12 11 10 14 14 F 1.39897 * 109.47275 * 59.99906 * 13 12 11 15 15 F 1.39901 * 109.46792 * 180.02562 * 13 12 11 16 16 F 1.39899 * 109.46824 * 299.99802 * 13 12 11 17 17 N 1.32560 * 121.09952 * 0.53493 * 11 10 9 18 18 C 1.32021 * 122.30888 * 359.73642 * 17 11 10 19 19 F 1.35100 * 119.55433 * 180.02562 * 18 17 11 20 20 C 1.38802 * 120.89743 * 359.97438 * 18 17 11 21 21 O 1.35754 * 120.61063 * 180.02562 * 20 18 17 22 22 H 0.96996 * 119.99578 * 174.18858 * 1 2 3 23 23 H 1.07997 * 120.52148 * 359.97438 * 10 9 7 24 24 H 0.96697 * 113.99631 * 271.86863 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2418 1.6178 0.0000 4 1 2.4892 2.0464 1.4002 5 1 3.5393 1.4402 -0.7000 6 1 1.4392 2.6527 -0.7000 7 6 2.0080 -1.2126 -0.0005 8 1 3.0094 -1.2578 -0.4025 9 6 1.4046 -2.3767 0.5245 10 6 0.3769 -2.2920 1.4866 11 6 -0.1864 -3.4571 1.9672 12 8 -1.1803 -3.3871 2.8895 13 6 -1.7216 -4.6250 3.3551 14 9 -0.7079 -5.3823 3.9517 15 9 -2.7277 -4.3703 4.2933 16 9 -2.2597 -5.3339 2.2758 17 7 0.2304 -4.6432 1.5470 18 6 1.1922 -4.7770 0.6525 19 9 1.5730 -6.0134 0.2634 20 6 1.8167 -3.6645 0.1056 21 8 2.8047 -3.8088 -0.8141 22 1 -0.4849 -0.8357 -0.0851 23 1 0.0335 -1.3307 1.8393 24 1 3.6882 -3.8978 -0.4314 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396056975.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:37 Heat of formation + Delta-G solvation = -266.325323 kcal Electronic energy + Delta-G solvation = -20542.524803 eV Core-core repulsion = 16341.456061 eV Total energy + Delta-G solvation = -4201.068741 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.030 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.78536 -48.16025 -47.60214 -47.36073 -39.67710 -37.78615 -35.75160 -34.75837 -30.64310 -28.72508 -26.34697 -25.17308 -22.39919 -22.11093 -19.76588 -18.67384 -18.56986 -18.13188 -17.52549 -16.49759 -16.06650 -15.47545 -14.98780 -14.54755 -14.40358 -14.33569 -14.11588 -13.92145 -13.81288 -13.64877 -13.56450 -13.51621 -13.00350 -12.84156 -12.20818 -11.95824 -11.52693 -11.10416 -10.66336 -10.50280 -10.37059 -9.59980 -8.79339 -8.69526 -7.87378 -7.57374 -5.16491 1.89541 2.06199 2.20462 2.95199 3.01528 3.14428 3.42892 3.68689 4.00931 4.24732 4.50635 4.54952 4.77669 5.15567 5.58382 6.13168 6.26010 6.54229 6.78815 6.93643 7.25736 7.45367 7.62046 7.86243 8.19519 8.45573 8.58917 9.51056 Molecular weight = 267.03amu Principal moments of inertia in cm(-1) A = 0.021179 B = 0.007504 C = 0.005855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.771801 B = 3730.521931 C = 4781.443471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.755 5.755 2 C 0.033 3.967 3 Si 1.076 2.924 4 H -0.269 1.269 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.451 4.451 8 H 0.097 0.903 9 C 0.114 3.886 10 C -0.262 4.262 11 C 0.336 3.664 12 O -0.310 6.310 13 C 0.612 3.388 14 F -0.164 7.164 15 F -0.149 7.149 16 F -0.163 7.163 17 N -0.643 5.643 18 C 0.334 3.666 19 F -0.127 7.127 20 C -0.094 4.094 21 O -0.471 6.471 22 H 0.307 0.693 23 H 0.135 0.865 24 H 0.358 0.642 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.693 -1.217 3.653 3.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.376 5.376 2 C -0.194 4.194 3 Si 0.897 3.103 4 H -0.194 1.194 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.479 4.479 8 H 0.115 0.885 9 C 0.106 3.894 10 C -0.286 4.286 11 C 0.167 3.833 12 O -0.226 6.226 13 C 0.520 3.480 14 F -0.146 7.146 15 F -0.131 7.131 16 F -0.145 7.145 17 N -0.379 5.379 18 C 0.185 3.815 19 F -0.106 7.106 20 C -0.146 4.146 21 O -0.276 6.276 22 H 0.121 0.879 23 H 0.153 0.847 24 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -0.547 -0.178 3.723 3.767 hybrid contribution 0.716 -1.813 0.130 1.953 sum 0.169 -1.991 3.853 4.340 Atomic orbital electron populations 1.70420 1.08327 1.35219 1.23671 1.27468 0.95591 1.05065 0.91239 0.83467 0.75490 0.72613 0.78750 1.19379 1.19511 1.19546 1.20711 1.03242 0.92757 1.31210 0.88531 1.17634 0.90277 0.92081 0.89409 1.20806 1.06124 0.95860 1.05840 1.18376 0.87084 0.89769 0.88093 1.86604 1.50847 1.28219 1.56915 1.19204 0.75613 0.77747 0.75399 1.93264 1.60586 1.76731 1.84040 1.93233 1.60372 1.94302 1.65153 1.93272 1.86307 1.79099 1.55835 1.65907 1.22914 1.26328 1.22722 1.17689 0.92863 0.79113 0.91797 1.91503 1.89159 1.41182 1.88764 1.18895 1.01751 0.90662 1.03248 1.84879 1.16437 1.94791 1.31505 0.87912 0.84728 0.78957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.79 12.33 55.55 0.69 -17.11 14 2 C 0.03 0.73 4.99 -17.33 -0.09 0.64 14 3 Si 1.08 18.52 30.00 -169.99 -5.10 13.42 14 4 H -0.27 -4.48 7.11 56.52 0.40 -4.08 14 5 H -0.27 -4.39 7.11 56.52 0.40 -3.99 14 6 H -0.27 -4.66 7.11 56.52 0.40 -4.26 14 7 C -0.45 -10.46 8.72 -37.77 -0.33 -10.79 14 8 H 0.10 2.14 7.77 -52.49 -0.41 1.73 14 9 C 0.11 2.74 5.34 -106.43 -0.57 2.17 14 10 C -0.26 -6.23 7.95 -38.60 -0.31 -6.53 14 11 C 0.34 7.83 7.17 -17.31 -0.12 7.71 14 12 O -0.31 -6.57 10.35 -19.02 -0.20 -6.77 14 13 C 0.61 11.59 3.50 101.05 0.35 11.95 14 14 F -0.16 -3.16 16.54 2.25 0.04 -3.13 14 15 F -0.15 -2.45 17.53 2.25 0.04 -2.41 14 16 F -0.16 -3.20 16.54 2.25 0.04 -3.17 14 17 N -0.64 -15.35 8.02 -13.71 -0.11 -15.46 14 18 C 0.33 7.90 8.42 -17.26 -0.15 7.75 14 19 F -0.13 -2.84 17.13 2.25 0.04 -2.80 14 20 C -0.09 -2.20 6.79 -38.11 -0.26 -2.45 14 21 O -0.47 -10.01 12.78 -18.97 -0.24 -10.25 14 22 H 0.31 7.52 6.66 -40.82 -0.27 7.25 14 23 H 0.13 3.20 6.55 -52.49 -0.34 2.85 14 24 H 0.36 5.86 9.06 45.56 0.41 6.27 14 LS Contribution 245.47 15.07 3.70 3.70 Total: -1.00 -25.77 245.47 -1.98 -27.76 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: 0.59 Total: 5.78 kcal Atomic # 6 Polarization: 11.91 SS G_CDS: -1.47 Total: 10.44 kcal Atomic # 7 Polarization: -33.14 SS G_CDS: 0.58 Total: -32.57 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: -0.44 Total: -17.02 kcal Atomic # 9 Polarization: -11.66 SS G_CDS: 0.15 Total: -11.50 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.10 Total: 13.42 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -25.77 -1.98 -27.76 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396056975.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -238.569 kcal (2) G-P(sol) polarization free energy of solvation -25.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -264.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -266.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds