Wall clock time and date at job start Mon Mar 30 2020 05:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30783 * 1 3 3 Si 1.86804 * 119.99847 * 2 1 4 4 H 1.48506 * 109.46670 * 89.99941 * 3 2 1 5 5 H 1.48498 * 109.47053 * 210.00006 * 3 2 1 6 6 H 1.48504 * 109.47132 * 330.00231 * 3 2 1 7 7 C 1.40021 * 120.00130 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99842 * 154.54994 * 7 2 1 9 9 C 1.41241 * 120.00107 * 334.55105 * 7 2 1 10 10 C 1.41029 * 121.02617 * 335.32268 * 9 7 2 11 11 C 1.38043 * 118.95828 * 179.75335 * 10 9 7 12 12 O 1.35769 * 119.45129 * 180.27206 * 11 10 9 13 13 C 1.42908 * 117.00026 * 180.26198 * 12 11 10 14 14 F 1.39897 * 109.47275 * 59.99906 * 13 12 11 15 15 F 1.39901 * 109.46792 * 180.02562 * 13 12 11 16 16 F 1.39899 * 109.46824 * 299.99802 * 13 12 11 17 17 N 1.32560 * 121.09952 * 0.53493 * 11 10 9 18 18 C 1.32021 * 122.30888 * 359.73642 * 17 11 10 19 19 F 1.35100 * 119.55433 * 180.02562 * 18 17 11 20 20 C 1.38802 * 120.89743 * 359.97438 * 18 17 11 21 21 O 1.35754 * 120.61063 * 180.02562 * 20 18 17 22 22 H 0.96996 * 119.99578 * 174.18858 * 1 2 3 23 23 H 1.07997 * 120.52148 * 359.97438 * 10 9 7 24 24 H 0.96697 * 113.99631 * 271.86863 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2418 1.6178 0.0000 4 1 2.4892 2.0464 1.4002 5 1 3.5393 1.4402 -0.7000 6 1 1.4392 2.6527 -0.7000 7 6 2.0080 -1.2126 -0.0005 8 1 3.0094 -1.2578 -0.4025 9 6 1.4046 -2.3767 0.5245 10 6 0.3769 -2.2920 1.4866 11 6 -0.1864 -3.4571 1.9672 12 8 -1.1803 -3.3871 2.8895 13 6 -1.7216 -4.6250 3.3551 14 9 -0.7079 -5.3823 3.9517 15 9 -2.7277 -4.3703 4.2933 16 9 -2.2597 -5.3339 2.2758 17 7 0.2304 -4.6432 1.5470 18 6 1.1922 -4.7770 0.6525 19 9 1.5730 -6.0134 0.2634 20 6 1.8167 -3.6645 0.1056 21 8 2.8047 -3.8088 -0.8141 22 1 -0.4849 -0.8357 -0.0851 23 1 0.0335 -1.3307 1.8393 24 1 3.6882 -3.8978 -0.4314 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396056975.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:36 Heat of formation + Delta-G solvation = -284.630153 kcal Electronic energy + Delta-G solvation = -20543.318560 eV Core-core repulsion = 16341.456061 eV Total energy + Delta-G solvation = -4201.862498 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.030 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -51.30299 -49.95696 -49.08049 -48.92233 -41.44321 -39.51059 -37.47732 -36.51983 -32.43709 -30.50020 -28.14052 -26.78349 -24.20318 -23.84851 -21.44858 -20.27448 -20.12401 -19.81436 -19.24752 -18.25237 -17.80639 -17.26487 -16.71070 -16.15037 -15.92099 -15.87083 -15.75075 -15.49662 -15.37629 -15.35529 -15.09199 -15.08124 -14.71479 -14.51798 -13.92047 -13.73247 -13.12002 -12.78713 -12.23897 -12.08551 -11.82052 -11.25807 -10.59859 -10.49952 -9.66547 -9.36531 -6.98239 0.08635 0.40460 0.45615 1.55710 1.61661 1.81666 1.84654 2.26029 2.32406 2.50286 2.91353 2.94719 3.09392 3.41613 3.83083 4.29908 4.46670 4.76127 5.00887 5.13131 5.43065 5.65943 5.84058 6.08544 6.43335 6.65024 6.97343 7.70846 Molecular weight = 267.03amu Principal moments of inertia in cm(-1) A = 0.021179 B = 0.007504 C = 0.005855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.771801 B = 3730.521931 C = 4781.443471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.004 3.996 3 Si 1.125 2.875 4 H -0.259 1.259 5 H -0.251 1.251 6 H -0.271 1.271 7 C -0.461 4.461 8 H 0.106 0.894 9 C 0.093 3.907 10 C -0.272 4.272 11 C 0.334 3.666 12 O -0.314 6.314 13 C 0.616 3.384 14 F -0.165 7.165 15 F -0.130 7.130 16 F -0.166 7.166 17 N -0.652 5.652 18 C 0.321 3.679 19 F -0.122 7.122 20 C -0.093 4.093 21 O -0.477 6.477 22 H 0.292 0.708 23 H 0.129 0.871 24 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.494 -0.485 3.701 4.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.217 4.217 3 Si 0.940 3.060 4 H -0.183 1.183 5 H -0.175 1.175 6 H -0.195 1.195 7 C -0.489 4.489 8 H 0.124 0.876 9 C 0.085 3.915 10 C -0.296 4.296 11 C 0.165 3.835 12 O -0.229 6.229 13 C 0.525 3.475 14 F -0.147 7.147 15 F -0.112 7.112 16 F -0.148 7.148 17 N -0.388 5.388 18 C 0.173 3.827 19 F -0.101 7.101 20 C -0.145 4.145 21 O -0.285 6.285 22 H 0.105 0.895 23 H 0.147 0.853 24 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 0.259 0.514 3.779 3.823 hybrid contribution 0.465 -2.086 0.108 2.139 sum 0.724 -1.571 3.887 4.255 Atomic orbital electron populations 1.70530 1.09181 1.34288 1.25145 1.28883 0.95449 1.07943 0.89471 0.82894 0.74985 0.68685 0.79459 1.18299 1.17487 1.19541 1.21014 1.03631 0.93120 1.31112 0.87625 1.17917 0.90749 0.92809 0.89980 1.20776 1.06698 0.95790 1.06306 1.18410 0.87279 0.89569 0.88241 1.86570 1.50384 1.29518 1.56472 1.19092 0.75796 0.77077 0.75514 1.93262 1.60791 1.76637 1.83968 1.93277 1.59438 1.94132 1.64309 1.93265 1.86299 1.79076 1.56202 1.65940 1.23232 1.26545 1.23125 1.17815 0.93224 0.79454 0.92203 1.91505 1.89111 1.40798 1.88725 1.18916 1.02261 0.90417 1.02919 1.84787 1.17523 1.94674 1.31511 0.89490 0.85306 0.76176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -36.15 12.33 21.84 0.27 -35.88 14 2 C 0.00 0.19 4.99 85.28 0.43 0.62 14 3 Si 1.13 35.30 30.00 68.60 2.06 37.36 14 4 H -0.26 -7.70 7.11 99.48 0.71 -6.99 14 5 H -0.25 -7.09 7.11 99.48 0.71 -6.39 14 6 H -0.27 -8.48 7.11 99.48 0.71 -7.77 14 7 C -0.46 -20.93 8.72 23.44 0.20 -20.72 14 8 H 0.11 4.50 7.77 -2.91 -0.02 4.48 14 9 C 0.09 4.46 5.34 -21.04 -0.11 4.35 14 10 C -0.27 -12.94 7.95 22.91 0.18 -12.76 14 11 C 0.33 15.56 7.17 84.54 0.61 16.17 14 12 O -0.31 -13.17 10.35 -90.96 -0.94 -14.11 14 13 C 0.62 22.77 3.50 113.37 0.40 23.16 14 14 F -0.16 -6.18 16.54 44.97 0.74 -5.44 14 15 F -0.13 -4.08 17.53 44.97 0.79 -3.29 14 16 F -0.17 -6.40 16.54 44.97 0.74 -5.66 14 17 N -0.65 -30.89 8.02 -309.95 -2.49 -33.37 14 18 C 0.32 15.01 8.42 84.80 0.71 15.72 14 19 F -0.12 -5.37 17.13 44.97 0.77 -4.60 14 20 C -0.09 -4.30 6.79 23.22 0.16 -4.14 14 21 O -0.48 -19.57 12.78 -90.80 -1.16 -20.73 14 22 H 0.29 14.51 6.66 -92.71 -0.62 13.89 14 23 H 0.13 6.20 6.55 -2.91 -0.02 6.18 14 24 H 0.38 11.76 9.06 -74.06 -0.67 11.09 14 Total: -1.00 -52.98 245.47 4.15 -48.83 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: 0.79 Total: 14.49 kcal Atomic # 6 Polarization: 19.82 SS G_CDS: 2.57 Total: 22.40 kcal Atomic # 7 Polarization: -67.03 SS G_CDS: -2.22 Total: -69.25 kcal Atomic # 8 Polarization: -32.74 SS G_CDS: -2.10 Total: -34.84 kcal Atomic # 9 Polarization: -22.03 SS G_CDS: 3.05 Total: -18.98 kcal Atomic # 14 Polarization: 35.30 SS G_CDS: 2.06 Total: 37.36 kcal Total: -52.98 4.15 -48.83 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396056975.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -235.799 kcal (2) G-P(sol) polarization free energy of solvation -52.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -288.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -284.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds