Wall clock time and date at job start Mon Mar 30 2020 05:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30947 * 1 3 3 Si 1.86799 * 119.99946 * 2 1 4 4 H 1.48503 * 109.47489 * 275.07886 * 3 2 1 5 5 H 1.48504 * 109.47044 * 35.08080 * 3 2 1 6 6 H 1.48506 * 109.46985 * 155.07952 * 3 2 1 7 7 C 1.39875 * 120.00014 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99836 * 336.82921 * 7 2 1 9 9 C 1.40962 * 120.00270 * 156.82578 * 7 2 1 10 10 C 1.41707 * 120.71311 * 138.41103 * 9 7 2 11 11 O 1.35568 * 120.91659 * 359.97438 * 10 9 7 12 12 C 1.38646 * 118.15843 * 180.25537 * 10 9 7 13 13 C 1.38610 * 119.47986 * 359.43606 * 12 10 9 14 14 F 1.35102 * 119.28395 * 180.29893 * 13 12 10 15 15 N 1.32374 * 121.43798 * 0.58558 * 13 12 10 16 16 C 1.32033 * 122.01761 * 359.71490 * 15 13 12 17 17 O 1.35427 * 119.83438 * 180.02562 * 16 15 13 18 18 C 1.42896 * 117.00026 * 359.97438 * 17 16 15 19 19 F 1.39895 * 109.47393 * 60.00024 * 18 17 16 20 20 F 1.39909 * 109.47375 * 180.02562 * 18 17 16 21 21 F 1.39902 * 109.47330 * 299.99762 * 18 17 16 22 22 H 0.97004 * 120.00227 * 359.97438 * 1 2 3 23 23 H 0.96700 * 113.99787 * 88.92988 * 11 10 9 24 24 H 1.07998 * 120.25524 * 179.70561 * 12 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3095 0.0000 0.0000 3 14 2.2434 1.6177 0.0000 4 1 2.3837 2.1085 -1.3946 5 1 1.4987 2.6193 0.8047 6 1 3.5906 1.4115 0.5900 7 6 2.0089 -1.2114 -0.0005 8 1 1.5342 -2.1091 0.3671 9 6 3.3332 -1.2605 -0.4810 10 6 4.3205 -2.0198 0.1948 11 8 4.0164 -2.7157 1.3178 12 6 5.6075 -2.0264 -0.3210 13 6 5.8838 -1.3090 -1.4743 14 9 7.1378 -1.3231 -1.9769 15 7 4.9472 -0.6056 -2.0910 16 6 3.7047 -0.5537 -1.6472 17 8 2.7815 0.1797 -2.3134 18 6 3.2227 0.8692 -3.4847 19 9 3.7103 -0.0556 -4.4144 20 9 2.1501 1.5721 -4.0441 21 9 4.2398 1.7667 -3.1423 22 1 -0.4851 0.8401 0.0004 23 1 3.7077 -3.6167 1.1506 24 1 6.3874 -2.5898 0.1696 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396060522.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:25 Heat of formation + Delta-G solvation = -265.469644 kcal Electronic energy + Delta-G solvation = -21235.127151 eV Core-core repulsion = 17034.095515 eV Total energy + Delta-G solvation = -4201.031636 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.030 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -51.29624 -49.70553 -49.06211 -48.90489 -41.52996 -39.40230 -37.52947 -35.82412 -32.73332 -31.68613 -27.58492 -26.83297 -24.21640 -23.51735 -21.19716 -20.59534 -20.16881 -19.56811 -19.20317 -17.95638 -17.62202 -17.18634 -16.90304 -16.53403 -16.06294 -15.80602 -15.58319 -15.42145 -15.37489 -15.33383 -15.17155 -15.08633 -14.92970 -14.63274 -14.22509 -13.73529 -13.14565 -13.06170 -12.50792 -12.04365 -11.61801 -11.18871 -11.01621 -10.32696 -9.62078 -9.07539 -6.61760 0.07186 0.17305 0.49710 1.20017 1.29059 1.32488 1.86641 2.02024 2.26737 2.63684 2.84857 2.97707 3.12540 3.33097 3.84725 4.14805 4.45978 4.66741 5.05727 5.11870 5.30520 5.77693 6.00313 6.18803 6.49358 6.71114 6.98841 7.97037 Molecular weight = 267.03amu Principal moments of inertia in cm(-1) A = 0.015663 B = 0.014212 C = 0.008688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.172050 B = 1969.637996 C = 3221.980576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.079 3.921 3 Si 0.930 3.070 4 H -0.259 1.259 5 H -0.258 1.258 6 H -0.270 1.270 7 C -0.439 4.439 8 H 0.094 0.906 9 C 0.008 3.992 10 C 0.099 3.901 11 O -0.474 6.474 12 C -0.170 4.170 13 C 0.213 3.787 14 F -0.125 7.125 15 N -0.545 5.545 16 C 0.204 3.796 17 O -0.297 6.297 18 C 0.607 3.393 19 F -0.163 7.163 20 F -0.137 7.137 21 F -0.169 7.169 22 H 0.300 0.700 23 H 0.403 0.597 24 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.728 -0.687 -1.765 5.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.142 4.142 3 Si 0.754 3.246 4 H -0.184 1.184 5 H -0.183 1.183 6 H -0.194 1.194 7 C -0.466 4.466 8 H 0.112 0.888 9 C 0.002 3.998 10 C 0.046 3.954 11 O -0.286 6.286 12 C -0.192 4.192 13 C 0.060 3.940 14 F -0.105 7.105 15 N -0.272 5.272 16 C 0.024 3.976 17 O -0.212 6.212 18 C 0.516 3.484 19 F -0.146 7.146 20 F -0.119 7.119 21 F -0.151 7.151 22 H 0.111 0.889 23 H 0.262 0.738 24 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 4.619 0.400 -2.173 5.121 hybrid contribution 0.023 0.097 -0.132 0.165 sum 4.642 0.497 -2.305 5.206 Atomic orbital electron populations 1.69724 1.08589 1.31956 1.32489 1.26383 0.94950 1.02796 0.90052 0.86023 0.79846 0.79269 0.79446 1.18428 1.18287 1.19445 1.19026 0.94563 0.97179 1.35845 0.88828 1.18163 0.95622 0.95840 0.90201 1.18208 0.89402 1.00132 0.87660 1.84656 1.87250 1.30780 1.25879 1.21762 0.98873 1.03011 0.95506 1.16863 0.79866 1.02676 0.94563 1.91504 1.35565 1.95515 1.87892 1.65709 1.01515 1.23132 1.36811 1.18800 0.84580 1.01902 0.92273 1.86701 1.36869 1.61066 1.36575 1.19247 0.74000 0.76543 0.78622 1.93250 1.88068 1.66408 1.66824 1.93251 1.56385 1.78149 1.84102 1.93238 1.61033 1.68870 1.91979 0.88921 0.73792 0.80873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -39.88 13.93 21.82 0.30 -39.58 14 2 C 0.08 3.90 4.82 85.22 0.41 4.31 14 3 Si 0.93 41.49 24.86 68.60 1.71 43.19 14 4 H -0.26 -11.44 5.34 99.48 0.53 -10.91 14 5 H -0.26 -10.52 7.11 99.48 0.71 -9.82 14 6 H -0.27 -12.65 7.11 99.48 0.71 -11.95 14 7 C -0.44 -21.61 8.97 23.33 0.21 -21.40 14 8 H 0.09 4.70 8.06 -2.91 -0.02 4.67 14 9 C 0.01 0.36 4.73 -20.99 -0.10 0.26 14 10 C 0.10 3.90 6.79 23.22 0.16 4.06 14 11 O -0.47 -16.03 13.06 -88.75 -1.16 -17.19 14 12 C -0.17 -6.07 10.01 22.46 0.22 -5.85 14 13 C 0.21 8.64 8.40 84.70 0.71 9.35 14 14 F -0.13 -4.74 17.28 44.97 0.78 -3.97 14 15 N -0.55 -24.76 8.07 -308.25 -2.49 -27.25 14 16 C 0.20 9.58 5.78 85.43 0.49 10.07 14 17 O -0.30 -13.88 5.85 -87.22 -0.51 -14.39 14 18 C 0.61 25.29 2.80 113.37 0.32 25.61 14 19 F -0.16 -6.60 16.55 44.97 0.74 -5.85 14 20 F -0.14 -5.19 17.53 44.97 0.79 -4.41 14 21 F -0.17 -7.05 16.32 44.97 0.73 -6.32 14 22 H 0.30 13.47 8.30 -92.70 -0.77 12.70 14 23 H 0.40 9.39 9.06 -74.06 -0.67 8.72 14 24 H 0.17 4.79 8.06 -2.91 -0.02 4.77 14 Total: -1.00 -54.94 238.78 3.78 -51.16 By element: Atomic # 1 Polarization: -2.27 SS G_CDS: 0.46 Total: -1.81 kcal Atomic # 6 Polarization: 23.98 SS G_CDS: 2.43 Total: 26.41 kcal Atomic # 7 Polarization: -64.65 SS G_CDS: -2.18 Total: -66.83 kcal Atomic # 8 Polarization: -29.91 SS G_CDS: -1.67 Total: -31.58 kcal Atomic # 9 Polarization: -23.58 SS G_CDS: 3.04 Total: -20.54 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 1.71 Total: 43.19 kcal Total: -54.94 3.78 -51.16 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396060522.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -214.307 kcal (2) G-P(sol) polarization free energy of solvation -54.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -269.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -265.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds