Wall clock time and date at job start Mon Mar 30 2020 05:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30904 * 1 3 3 Si 1.86801 * 119.99384 * 2 1 4 4 H 1.48504 * 109.46948 * 275.40834 * 3 2 1 5 5 H 1.48505 * 109.47561 * 35.40678 * 3 2 1 6 6 H 1.48501 * 109.47189 * 155.41316 * 3 2 1 7 7 C 1.39883 * 120.00592 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00023 * 341.82294 * 7 2 1 9 9 C 1.41187 * 120.00273 * 161.82559 * 7 2 1 10 10 C 1.40703 * 120.66071 * 330.50142 * 9 7 2 11 11 N 1.31469 * 120.56650 * 180.26071 * 10 9 7 12 12 C 1.32422 * 122.14644 * 359.74579 * 11 10 9 13 13 F 1.35098 * 119.35854 * 180.02562 * 12 11 10 14 14 C 1.38924 * 121.28272 * 359.96886 * 12 11 10 15 15 O 1.36073 * 120.37095 * 180.02562 * 14 12 11 16 16 C 1.39055 * 119.25697 * 0.02814 * 14 12 11 17 17 O 1.35647 * 120.96412 * 179.97438 * 16 14 12 18 18 C 1.42898 * 117.00270 * 90.00370 * 17 16 14 19 19 F 1.39894 * 109.47445 * 59.99727 * 18 17 16 20 20 F 1.39908 * 109.47055 * 179.97438 * 18 17 16 21 21 F 1.39899 * 109.46681 * 299.99474 * 18 17 16 22 22 H 0.96995 * 120.00310 * 0.02562 * 1 2 3 23 23 H 1.08002 * 119.72001 * 359.97438 * 10 9 7 24 24 H 0.96695 * 114.00553 * 269.97844 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 2.3760 2.1125 -1.3939 5 1 1.5021 2.6171 0.8112 6 1 3.5930 1.4101 0.5825 7 6 2.0086 -1.2113 0.0005 8 1 1.5091 -2.1233 0.2927 9 6 3.3676 -1.2419 -0.3808 10 6 3.8745 -0.3105 -1.3056 11 7 5.1392 -0.3439 -1.6632 12 6 5.9860 -1.2375 -1.1755 13 9 7.2742 -1.2201 -1.5820 14 6 5.5757 -2.1918 -0.2531 15 8 6.4618 -3.1011 0.2365 16 6 4.2494 -2.2074 0.1644 17 8 3.8113 -3.1241 1.0631 18 6 3.8919 -2.7681 2.4447 19 9 3.1270 -1.6198 2.6758 20 9 3.4016 -3.8196 3.2266 21 9 5.2255 -2.5163 2.7843 22 1 -0.4850 0.8400 -0.0004 23 1 3.2180 0.4354 -1.7287 24 1 6.5164 -3.9156 -0.2819 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396063305.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:00 Heat of formation + Delta-G solvation = -276.060904 kcal Electronic energy + Delta-G solvation = -21164.983839 eV Core-core repulsion = 16963.492931 eV Total energy + Delta-G solvation = -4201.490908 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.030 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -51.08227 -49.61063 -48.87318 -48.71726 -41.35556 -38.86003 -38.31024 -36.03715 -32.94282 -31.11826 -27.67515 -26.61652 -24.49108 -23.52732 -20.81592 -20.42364 -19.99647 -19.88138 -19.16092 -18.28093 -18.20485 -17.23659 -16.93731 -16.17166 -15.74005 -15.70325 -15.62411 -15.47496 -15.22613 -14.94092 -14.93726 -14.78123 -14.64645 -14.56606 -14.03829 -13.77887 -13.33713 -12.94996 -12.83569 -12.13846 -11.85013 -11.31609 -10.62295 -10.46272 -9.76822 -9.27006 -6.87997 -0.30883 0.08119 1.15732 1.20808 1.34059 1.39284 1.93777 2.12602 2.23463 2.75325 2.94838 3.20909 3.24771 3.29742 3.80517 4.02420 4.33662 4.53513 4.81448 5.09079 5.45408 5.59428 5.85183 6.10202 6.24588 6.64954 6.88170 7.76030 Molecular weight = 267.03amu Principal moments of inertia in cm(-1) A = 0.016048 B = 0.012708 C = 0.008019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.310805 B = 2202.829052 C = 3490.855736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.060 3.940 3 Si 0.938 3.062 4 H -0.232 1.232 5 H -0.256 1.256 6 H -0.264 1.264 7 C -0.385 4.385 8 H 0.086 0.914 9 C 0.026 3.974 10 C 0.022 3.978 11 N -0.464 5.464 12 C 0.112 3.888 13 F -0.130 7.130 14 C 0.122 3.878 15 O -0.486 6.486 16 C -0.060 4.060 17 O -0.293 6.293 18 C 0.579 3.421 19 F -0.175 7.175 20 F -0.143 7.143 21 F -0.176 7.176 22 H 0.313 0.687 23 H 0.166 0.834 24 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.945 -1.357 1.847 3.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.165 4.165 3 Si 0.759 3.241 4 H -0.156 1.156 5 H -0.181 1.181 6 H -0.188 1.188 7 C -0.411 4.411 8 H 0.104 0.896 9 C 0.020 3.980 10 C -0.145 4.145 11 N -0.177 5.177 12 C -0.036 4.036 13 F -0.109 7.109 14 C 0.073 3.927 15 O -0.298 6.298 16 C -0.110 4.110 17 O -0.214 6.214 18 C 0.489 3.511 19 F -0.157 7.157 20 F -0.124 7.124 21 F -0.158 7.158 22 H 0.125 0.875 23 H 0.183 0.817 24 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 3.105 -0.512 1.720 3.586 hybrid contribution -0.034 -0.432 0.571 0.717 sum 3.071 -0.945 2.291 3.946 Atomic orbital electron populations 1.69626 1.08893 1.33539 1.27441 1.26810 0.95478 1.03803 0.90427 0.85890 0.79582 0.77001 0.81602 1.15597 1.18062 1.18826 1.19527 0.92013 0.96812 1.32732 0.89610 1.18862 0.94278 0.91722 0.93145 1.22537 0.90032 1.02876 0.99093 1.66380 1.04764 1.21744 1.24848 1.17658 0.81201 1.00869 1.03886 1.91453 1.32818 1.96288 1.90376 1.18978 0.87226 0.92336 0.94136 1.84719 1.59779 1.30443 1.54875 1.18418 0.90469 1.02864 0.99288 1.86454 1.82934 1.40632 1.11339 1.20564 0.74060 0.74012 0.82414 1.93274 1.76163 1.51641 1.94666 1.93210 1.88006 1.57964 1.73260 1.93241 1.35871 1.94108 1.92582 0.87464 0.81722 0.72783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -34.05 13.93 21.82 0.30 -33.75 14 2 C 0.06 2.62 5.41 85.23 0.46 3.09 14 3 Si 0.94 35.19 24.52 68.60 1.68 36.87 14 4 H -0.23 -7.88 6.71 99.48 0.67 -7.21 14 5 H -0.26 -8.81 7.11 99.48 0.71 -8.11 14 6 H -0.26 -10.94 6.85 99.48 0.68 -10.26 14 7 C -0.38 -18.07 8.11 23.39 0.19 -17.88 14 8 H 0.09 4.35 7.95 -2.91 -0.02 4.33 14 9 C 0.03 1.21 5.02 -21.11 -0.11 1.11 14 10 C 0.02 0.99 8.36 85.35 0.71 1.70 14 11 N -0.46 -20.91 10.34 -194.58 -2.01 -22.92 14 12 C 0.11 4.89 8.41 84.77 0.71 5.60 14 13 F -0.13 -5.41 17.12 44.97 0.77 -4.64 14 14 C 0.12 5.11 6.52 22.63 0.15 5.26 14 15 O -0.49 -17.22 12.76 -81.76 -1.04 -18.27 14 16 C -0.06 -2.65 5.39 23.31 0.13 -2.53 14 17 O -0.29 -12.45 9.60 -77.00 -0.74 -13.19 14 18 C 0.58 22.95 3.80 113.37 0.43 23.38 14 19 F -0.18 -7.40 15.95 44.97 0.72 -6.68 14 20 F -0.14 -5.06 17.53 44.97 0.79 -4.28 14 21 F -0.18 -6.88 16.55 44.97 0.74 -6.14 14 22 H 0.31 11.99 8.30 -92.71 -0.77 11.22 14 23 H 0.17 6.68 4.70 -2.91 -0.01 6.66 14 24 H 0.41 10.15 9.07 -74.06 -0.67 9.47 14 Total: -1.00 -51.62 240.03 4.47 -47.15 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: 0.58 Total: 6.11 kcal Atomic # 6 Polarization: 17.05 SS G_CDS: 2.68 Total: 19.73 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: -1.71 Total: -56.66 kcal Atomic # 8 Polarization: -29.67 SS G_CDS: -1.78 Total: -31.45 kcal Atomic # 9 Polarization: -24.75 SS G_CDS: 3.02 Total: -21.73 kcal Atomic # 14 Polarization: 35.19 SS G_CDS: 1.68 Total: 36.87 kcal Total: -51.62 4.47 -47.15 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396063305.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -228.910 kcal (2) G-P(sol) polarization free energy of solvation -51.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -280.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -276.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds