Wall clock time and date at job start Mon Mar 30 2020 05:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30784 * 1 3 3 Si 1.86794 * 119.99820 * 2 1 4 4 H 1.48496 * 109.47365 * 83.22540 * 3 2 1 5 5 H 1.48507 * 109.46971 * 203.22296 * 3 2 1 6 6 H 1.48503 * 109.47430 * 323.22040 * 3 2 1 7 7 C 1.40018 * 120.00060 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99839 * 22.04522 * 7 2 1 9 9 C 1.41236 * 120.00344 * 202.04597 * 7 2 1 10 10 C 1.41186 * 121.02624 * 24.89107 * 9 7 2 11 11 C 1.37609 * 119.04977 * 179.73067 * 10 9 7 12 12 F 1.35100 * 119.39527 * 180.25205 * 11 10 9 13 13 N 1.32430 * 121.21563 * 0.56089 * 11 10 9 14 14 C 1.32143 * 122.30736 * 359.71215 * 13 11 10 15 15 O 1.35770 * 119.61123 * 180.02562 * 14 13 11 16 16 C 1.42900 * 116.99929 * 359.97438 * 15 14 13 17 17 F 1.39905 * 109.46955 * 60.00269 * 16 15 14 18 18 F 1.39899 * 109.47512 * 180.02562 * 16 15 14 19 19 F 1.39901 * 109.47151 * 300.00363 * 16 15 14 20 20 C 1.39255 * 120.78672 * 359.97438 * 14 13 11 21 21 O 1.35736 * 120.65561 * 180.02562 * 20 14 13 22 22 H 0.97003 * 119.99921 * 173.05505 * 1 2 3 23 23 H 1.07999 * 120.47661 * 0.02562 * 10 9 7 24 24 H 0.96700 * 114.00158 * 269.98153 * 21 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2418 1.6177 0.0000 4 1 2.3462 2.1290 1.3902 5 1 3.6036 1.4031 -0.5521 6 1 1.5181 2.6071 -0.8383 7 6 2.0079 -1.2126 0.0005 8 1 1.5271 -2.1139 -0.3501 9 6 3.3429 -1.2572 0.4597 10 6 3.8304 -0.2980 1.3738 11 6 5.1365 -0.3832 1.7985 12 9 5.6089 0.5279 2.6771 13 7 5.9408 -1.3384 1.3574 14 6 5.5396 -2.2583 0.4978 15 8 6.4106 -3.2133 0.0821 16 6 7.7357 -3.1587 0.6142 17 9 7.6841 -3.2777 2.0072 18 9 8.4948 -4.2074 0.0839 19 9 8.3257 -1.9372 0.2720 20 6 4.2339 -2.2606 0.0139 21 8 3.8245 -3.2072 -0.8686 22 1 -0.4850 -0.8339 -0.1016 23 1 3.1862 0.4885 1.7381 24 1 3.9533 -2.9629 -1.7954 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396066990.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:27 Heat of formation + Delta-G solvation = -263.073672 kcal Electronic energy + Delta-G solvation = -20642.573223 eV Core-core repulsion = 16441.645484 eV Total energy + Delta-G solvation = -4200.927739 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.030 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.82448 -48.25701 -47.64118 -47.40117 -39.84652 -37.51521 -36.07251 -34.46448 -31.46895 -28.70456 -26.50244 -25.13292 -22.76619 -21.63809 -19.68628 -18.82620 -18.61404 -18.35932 -17.54954 -16.75277 -16.22288 -15.58835 -15.17107 -14.67200 -14.45896 -14.40569 -14.04486 -13.90733 -13.76215 -13.64547 -13.59989 -13.47477 -13.43513 -12.89415 -12.34698 -12.10215 -11.47457 -11.16895 -10.51925 -10.46006 -10.07680 -9.70853 -8.95500 -8.69494 -7.87919 -7.73507 -5.26120 1.77548 1.99098 2.08587 2.93984 3.08181 3.26473 3.36945 3.64364 3.93710 4.18651 4.46727 4.52087 4.71345 5.11926 5.49180 5.88779 6.13417 6.43191 6.68148 6.88234 6.99090 7.39043 7.63920 7.84812 8.06634 8.33136 8.55801 9.42828 Molecular weight = 267.03amu Principal moments of inertia in cm(-1) A = 0.029076 B = 0.007347 C = 0.006340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.773059 B = 3810.118450 C = 4415.550594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.043 3.957 3 Si 1.067 2.933 4 H -0.267 1.267 5 H -0.259 1.259 6 H -0.280 1.280 7 C -0.452 4.452 8 H 0.098 0.902 9 C 0.121 3.879 10 C -0.315 4.315 11 C 0.356 3.644 12 F -0.127 7.127 13 N -0.638 5.638 14 C 0.329 3.671 15 O -0.304 6.304 16 C 0.609 3.391 17 F -0.163 7.163 18 F -0.149 7.149 19 F -0.164 7.164 20 C -0.056 4.056 21 O -0.471 6.471 22 H 0.297 0.703 23 H 0.132 0.868 24 H 0.363 0.637 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.953 -1.125 -1.411 7.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.183 4.183 3 Si 0.891 3.109 4 H -0.193 1.193 5 H -0.183 1.183 6 H -0.206 1.206 7 C -0.481 4.481 8 H 0.116 0.884 9 C 0.113 3.887 10 C -0.340 4.340 11 C 0.210 3.790 12 F -0.106 7.106 13 N -0.374 5.374 14 C 0.156 3.844 15 O -0.220 6.220 16 C 0.518 3.482 17 F -0.145 7.145 18 F -0.130 7.130 19 F -0.146 7.146 20 C -0.107 4.107 21 O -0.277 6.277 22 H 0.109 0.891 23 H 0.150 0.850 24 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 7.325 -0.063 -0.646 7.354 hybrid contribution -0.105 -1.373 -0.397 1.433 sum 7.220 -1.436 -1.043 7.435 Atomic orbital electron populations 1.70492 1.08101 1.34455 1.25731 1.27621 0.95582 1.04952 0.90169 0.83643 0.76062 0.72500 0.78719 1.19346 1.18281 1.20636 1.20792 0.95182 0.98026 1.34063 0.88378 1.17632 0.92882 0.88239 0.89954 1.21408 0.95358 1.08541 1.08688 1.16988 0.88145 0.85592 0.88277 1.91521 1.89775 1.63322 1.66030 1.65946 1.39525 1.09563 1.22333 1.19096 0.85500 0.86683 0.93082 1.86668 1.18499 1.50729 1.66056 1.19284 0.79841 0.74006 0.75054 1.93273 1.95976 1.95614 1.29649 1.93234 1.74605 1.58218 1.86989 1.93269 1.84530 1.44866 1.91938 1.18044 0.87980 1.00578 1.04085 1.84845 1.84869 1.40324 1.17613 0.89078 0.85040 0.78436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.77 13.65 55.55 0.76 -17.01 14 2 C 0.04 0.97 5.40 -17.33 -0.09 0.87 14 3 Si 1.07 21.11 24.90 -169.99 -4.23 16.88 14 4 H -0.27 -5.08 6.69 56.52 0.38 -4.71 14 5 H -0.26 -5.13 6.87 56.52 0.39 -4.74 14 6 H -0.28 -5.31 7.11 56.52 0.40 -4.91 14 7 C -0.45 -10.64 9.15 -37.78 -0.35 -10.99 14 8 H 0.10 2.39 7.88 -52.48 -0.41 1.97 14 9 C 0.12 2.83 5.22 -106.43 -0.56 2.27 14 10 C -0.32 -7.14 7.31 -38.69 -0.28 -7.42 14 11 C 0.36 8.05 8.38 -17.52 -0.15 7.91 14 12 F -0.13 -2.69 17.28 2.25 0.04 -2.65 14 13 N -0.64 -14.65 8.04 -13.71 -0.11 -14.76 14 14 C 0.33 7.37 7.21 -17.04 -0.12 7.25 14 15 O -0.30 -6.19 10.15 -33.48 -0.34 -6.53 14 16 C 0.61 11.08 3.50 101.05 0.35 11.44 14 17 F -0.16 -3.08 16.55 2.25 0.04 -3.04 14 18 F -0.15 -2.35 17.53 2.25 0.04 -2.31 14 19 F -0.16 -3.03 16.55 2.25 0.04 -2.99 14 20 C -0.06 -1.27 6.80 -38.00 -0.26 -1.53 14 21 O -0.47 -9.77 12.71 -33.37 -0.42 -10.19 14 22 H 0.30 6.61 8.73 -40.82 -0.36 6.26 14 23 H 0.13 2.84 4.50 -52.49 -0.24 2.60 14 24 H 0.36 5.90 9.06 45.56 0.41 6.31 14 LS Contribution 241.17 15.07 3.63 3.63 Total: -1.00 -24.93 241.17 -1.44 -26.37 By element: Atomic # 1 Polarization: 2.21 SS G_CDS: 0.57 Total: 2.79 kcal Atomic # 6 Polarization: 11.25 SS G_CDS: -1.45 Total: 9.80 kcal Atomic # 7 Polarization: -32.41 SS G_CDS: 0.65 Total: -31.76 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -0.76 Total: -16.72 kcal Atomic # 9 Polarization: -11.14 SS G_CDS: 0.15 Total: -10.99 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.23 Total: 16.88 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -24.93 -1.44 -26.37 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396066990.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -236.705 kcal (2) G-P(sol) polarization free energy of solvation -24.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -261.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -263.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds