Wall clock time and date at job start Mon Mar 30 2020 05:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30917 * 1 3 3 Si 1.86799 * 119.99774 * 2 1 4 4 H 1.48505 * 109.47424 * 269.99629 * 3 2 1 5 5 H 1.48500 * 109.47254 * 30.00039 * 3 2 1 6 6 H 1.48507 * 109.47343 * 149.99662 * 3 2 1 7 7 C 1.39866 * 120.00431 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00568 * 162.37525 * 7 2 1 9 9 C 1.41121 * 119.99952 * 342.37381 * 7 2 1 10 10 C 1.40672 * 120.63982 * 335.42239 * 9 7 2 11 11 N 1.31468 * 120.54384 * 180.25964 * 10 9 7 12 12 C 1.32676 * 122.07007 * 359.74149 * 11 10 9 13 13 O 1.35574 * 119.37497 * 180.02562 * 12 11 10 14 14 C 1.42894 * 117.00235 * 359.97438 * 13 12 11 15 15 F 1.39899 * 109.47332 * 59.99604 * 14 13 12 16 16 F 1.39900 * 109.47485 * 180.02562 * 14 13 12 17 17 F 1.39909 * 109.46906 * 300.00052 * 14 13 12 18 18 C 1.39129 * 121.24850 * 359.97438 * 12 11 10 19 19 F 1.35109 * 120.35554 * 180.02562 * 18 12 11 20 20 C 1.38596 * 119.29131 * 0.02562 * 18 12 11 21 21 O 1.35623 * 120.93945 * 179.97438 * 20 18 12 22 22 H 0.96997 * 120.00517 * 0.02562 * 1 2 3 23 23 H 1.08003 * 119.72871 * 0.02562 * 10 9 7 24 24 H 0.96693 * 114.00485 * 90.00204 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2431 1.6178 0.0000 4 1 2.4907 2.0465 -1.4001 5 1 1.4405 2.6527 0.7000 6 1 3.5407 1.4403 0.7001 7 6 2.0086 -1.2112 0.0005 8 1 3.0506 -1.2333 -0.2826 9 6 1.3528 -2.4046 0.3711 10 6 0.2207 -2.3711 1.2055 11 7 -0.3858 -3.4843 1.5538 12 6 0.0307 -4.6733 1.1377 13 8 -0.6364 -5.7864 1.5301 14 6 -1.7665 -5.5982 2.3840 15 9 -2.7148 -4.8013 1.7337 16 9 -2.3319 -6.8408 2.6900 17 9 -1.3590 -4.9683 3.5649 18 6 1.1385 -4.7994 0.3054 19 9 1.5467 -6.0192 -0.1080 20 6 1.8188 -3.6602 -0.0952 21 8 2.9030 -3.7443 -0.9056 22 1 -0.4851 0.8400 -0.0004 23 1 -0.1510 -1.4233 1.5661 24 1 2.6933 -3.7046 -1.8486 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396070602.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:07 Heat of formation + Delta-G solvation = -262.582959 kcal Electronic energy + Delta-G solvation = -20518.393888 eV Core-core repulsion = 16317.487428 eV Total energy + Delta-G solvation = -4200.906460 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.030 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.62598 -48.03235 -47.45238 -47.18849 -39.34723 -37.69968 -35.87061 -34.21510 -30.27419 -29.48392 -26.23327 -24.83602 -22.36061 -21.96838 -19.30878 -18.50685 -18.40144 -18.09101 -17.07901 -16.55513 -15.73578 -15.46986 -15.38144 -14.90211 -14.26061 -14.22908 -13.78300 -13.73433 -13.52852 -13.42371 -13.37647 -13.30762 -12.91011 -12.54270 -12.27344 -11.98734 -11.51035 -11.45864 -11.07077 -10.72910 -9.84030 -9.65718 -8.81728 -8.37973 -7.73584 -7.32692 -4.85365 2.06266 2.12399 2.26379 2.83432 2.86382 2.93217 3.58256 3.62031 4.07708 4.60413 4.72647 4.90120 5.03698 5.26538 5.45882 5.96650 6.32177 6.65241 6.75924 6.89331 7.23507 7.59865 7.89073 8.03636 8.23381 8.54679 8.92386 9.62338 Molecular weight = 267.03amu Principal moments of inertia in cm(-1) A = 0.025701 B = 0.006840 C = 0.005669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.186595 B = 4092.701387 C = 4938.131387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.069 3.931 3 Si 0.924 3.076 4 H -0.265 1.265 5 H -0.271 1.271 6 H -0.255 1.255 7 C -0.412 4.412 8 H 0.098 0.902 9 C 0.052 3.948 10 C 0.088 3.912 11 N -0.483 5.483 12 C 0.118 3.882 13 O -0.311 6.311 14 C 0.614 3.386 15 F -0.165 7.165 16 F -0.153 7.153 17 F -0.167 7.167 18 C 0.079 3.921 19 F -0.141 7.141 20 C -0.009 4.009 21 O -0.473 6.473 22 H 0.294 0.706 23 H 0.170 0.830 24 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.239 -1.481 0.709 2.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.153 4.153 3 Si 0.747 3.253 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.179 1.179 7 C -0.440 4.440 8 H 0.116 0.884 9 C 0.046 3.954 10 C -0.079 4.079 11 N -0.201 5.201 12 C -0.053 4.053 13 O -0.228 6.228 14 C 0.522 3.478 15 F -0.147 7.147 16 F -0.135 7.135 17 F -0.149 7.149 18 C 0.056 3.944 19 F -0.120 7.120 20 C -0.062 4.062 21 O -0.280 6.280 22 H 0.106 0.894 23 H 0.187 0.813 24 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -1.830 -1.697 1.711 3.026 hybrid contribution 0.437 0.490 -0.933 1.140 sum -1.393 -1.208 0.778 2.001 Atomic orbital electron populations 1.69757 1.07865 1.31107 1.30622 1.26186 0.94986 1.02442 0.91688 0.86009 0.80612 0.78872 0.79784 1.18940 1.19511 1.17860 1.19591 0.98680 0.89912 1.35810 0.88442 1.18714 0.92718 0.91964 0.91998 1.22753 0.95171 0.93620 0.96324 1.66894 1.31550 0.97554 1.24061 1.18366 0.95921 0.84519 1.06506 1.86367 1.40388 1.32421 1.63648 1.19145 0.78538 0.73195 0.76916 1.93262 1.65789 1.74386 1.81301 1.93211 1.84273 1.43220 1.92747 1.93255 1.90207 1.82589 1.48818 1.17674 0.94883 0.80559 1.01263 1.91386 1.89917 1.41649 1.89039 1.18155 0.94908 0.90119 1.02999 1.84758 1.28630 1.95346 1.19250 0.89421 0.81286 0.77772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -16.92 10.97 55.54 0.61 -16.31 14 2 C 0.07 1.47 5.15 -17.33 -0.09 1.38 14 3 Si 0.92 15.92 29.59 -169.99 -5.03 10.89 14 4 H -0.26 -4.52 7.11 56.52 0.40 -4.11 14 5 H -0.27 -4.56 7.11 56.52 0.40 -4.16 14 6 H -0.26 -4.44 7.11 56.52 0.40 -4.03 14 7 C -0.41 -9.42 8.76 -37.88 -0.33 -9.75 14 8 H 0.10 2.17 7.71 -52.49 -0.40 1.77 14 9 C 0.05 1.25 5.59 -106.51 -0.60 0.65 14 10 C 0.09 2.12 9.89 -16.79 -0.17 1.95 14 11 N -0.48 -11.67 8.00 -12.64 -0.10 -11.77 14 12 C 0.12 2.81 7.20 -16.86 -0.12 2.69 14 13 O -0.31 -6.91 10.20 -18.42 -0.19 -7.09 14 14 C 0.61 12.06 3.50 101.05 0.35 12.41 14 15 F -0.17 -3.33 16.53 2.25 0.04 -3.29 14 16 F -0.15 -2.61 17.53 2.25 0.04 -2.57 14 17 F -0.17 -3.31 16.53 2.25 0.04 -3.28 14 18 C 0.08 1.87 7.34 -39.12 -0.29 1.58 14 19 F -0.14 -3.20 16.99 2.25 0.04 -3.16 14 20 C -0.01 -0.22 6.80 -38.08 -0.26 -0.48 14 21 O -0.47 -9.89 12.82 -18.57 -0.24 -10.13 14 22 H 0.29 5.79 8.30 -40.82 -0.34 5.46 14 23 H 0.17 4.04 6.16 -52.48 -0.32 3.72 14 24 H 0.37 6.06 9.06 45.56 0.41 6.47 14 LS Contribution 245.96 15.07 3.71 3.71 Total: -1.00 -25.45 245.96 -2.04 -27.49 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: 0.55 Total: 5.10 kcal Atomic # 6 Polarization: 11.93 SS G_CDS: -1.50 Total: 10.43 kcal Atomic # 7 Polarization: -28.60 SS G_CDS: 0.51 Total: -28.09 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -0.43 Total: -17.22 kcal Atomic # 9 Polarization: -12.45 SS G_CDS: 0.15 Total: -12.30 kcal Atomic # 14 Polarization: 15.92 SS G_CDS: -5.03 Total: 10.89 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -25.45 -2.04 -27.49 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396070602.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -235.096 kcal (2) G-P(sol) polarization free energy of solvation -25.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -260.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -262.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds