Wall clock time and date at job start Mon Mar 30 2020 05:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30917 * 1 3 3 Si 1.86799 * 119.99774 * 2 1 4 4 H 1.48505 * 109.47424 * 269.99629 * 3 2 1 5 5 H 1.48500 * 109.47254 * 30.00039 * 3 2 1 6 6 H 1.48507 * 109.47343 * 149.99662 * 3 2 1 7 7 C 1.39866 * 120.00431 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00568 * 162.37525 * 7 2 1 9 9 C 1.41121 * 119.99952 * 342.37381 * 7 2 1 10 10 C 1.40672 * 120.63982 * 335.42239 * 9 7 2 11 11 N 1.31468 * 120.54384 * 180.25964 * 10 9 7 12 12 C 1.32676 * 122.07007 * 359.74149 * 11 10 9 13 13 O 1.35574 * 119.37497 * 180.02562 * 12 11 10 14 14 C 1.42894 * 117.00235 * 359.97438 * 13 12 11 15 15 F 1.39899 * 109.47332 * 59.99604 * 14 13 12 16 16 F 1.39900 * 109.47485 * 180.02562 * 14 13 12 17 17 F 1.39909 * 109.46906 * 300.00052 * 14 13 12 18 18 C 1.39129 * 121.24850 * 359.97438 * 12 11 10 19 19 F 1.35109 * 120.35554 * 180.02562 * 18 12 11 20 20 C 1.38596 * 119.29131 * 0.02562 * 18 12 11 21 21 O 1.35623 * 120.93945 * 179.97438 * 20 18 12 22 22 H 0.96997 * 120.00517 * 0.02562 * 1 2 3 23 23 H 1.08003 * 119.72871 * 0.02562 * 10 9 7 24 24 H 0.96693 * 114.00485 * 90.00204 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2431 1.6178 0.0000 4 1 2.4907 2.0465 -1.4001 5 1 1.4405 2.6527 0.7000 6 1 3.5407 1.4403 0.7001 7 6 2.0086 -1.2112 0.0005 8 1 3.0506 -1.2333 -0.2826 9 6 1.3528 -2.4046 0.3711 10 6 0.2207 -2.3711 1.2055 11 7 -0.3858 -3.4843 1.5538 12 6 0.0307 -4.6733 1.1377 13 8 -0.6364 -5.7864 1.5301 14 6 -1.7665 -5.5982 2.3840 15 9 -2.7148 -4.8013 1.7337 16 9 -2.3319 -6.8408 2.6900 17 9 -1.3590 -4.9683 3.5649 18 6 1.1385 -4.7994 0.3054 19 9 1.5467 -6.0192 -0.1080 20 6 1.8188 -3.6602 -0.0952 21 8 2.9030 -3.7443 -0.9056 22 1 -0.4851 0.8400 -0.0004 23 1 -0.1510 -1.4233 1.5661 24 1 2.6933 -3.7046 -1.8486 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396070602.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:06 Heat of formation + Delta-G solvation = -280.496637 kcal Electronic energy + Delta-G solvation = -20519.170684 eV Core-core repulsion = 16317.487428 eV Total energy + Delta-G solvation = -4201.683256 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.030 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -51.18314 -49.83698 -48.97329 -48.78953 -41.11140 -39.41650 -37.58792 -35.92449 -32.04529 -31.26755 -27.95371 -26.50662 -24.14716 -23.70685 -20.99362 -20.11544 -19.99481 -19.83407 -18.77283 -18.28997 -17.51858 -17.20574 -17.01404 -16.59173 -15.86126 -15.73685 -15.45109 -15.30800 -15.19030 -15.02538 -14.94969 -14.94022 -14.61854 -14.29594 -13.95558 -13.65219 -13.20165 -13.03360 -12.72813 -12.09173 -11.52227 -11.27470 -10.63968 -10.16757 -9.54843 -8.96734 -6.61925 0.24894 0.37321 0.63398 1.43290 1.49928 1.60998 1.97748 2.15366 2.39672 3.01393 3.09131 3.18742 3.26976 3.51710 3.71379 4.17746 4.52739 4.93360 5.00827 5.20003 5.42422 5.82536 6.13650 6.28944 6.50196 6.94724 7.10021 8.01051 Molecular weight = 267.03amu Principal moments of inertia in cm(-1) A = 0.025701 B = 0.006840 C = 0.005669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.186595 B = 4092.701387 C = 4938.131387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.038 3.962 3 Si 0.996 3.004 4 H -0.258 1.258 5 H -0.262 1.262 6 H -0.257 1.257 7 C -0.422 4.422 8 H 0.101 0.899 9 C 0.032 3.968 10 C 0.073 3.927 11 N -0.488 5.488 12 C 0.101 3.899 13 O -0.319 6.319 14 C 0.618 3.382 15 F -0.168 7.168 16 F -0.135 7.135 17 F -0.168 7.168 18 C 0.070 3.930 19 F -0.138 7.138 20 C -0.013 4.013 21 O -0.475 6.475 22 H 0.306 0.694 23 H 0.168 0.832 24 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.757 -0.332 0.403 0.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.183 4.183 3 Si 0.815 3.185 4 H -0.182 1.182 5 H -0.186 1.186 6 H -0.180 1.180 7 C -0.449 4.449 8 H 0.119 0.881 9 C 0.026 3.974 10 C -0.093 4.093 11 N -0.206 5.206 12 C -0.070 4.070 13 O -0.236 6.236 14 C 0.526 3.474 15 F -0.150 7.150 16 F -0.116 7.116 17 F -0.150 7.150 18 C 0.047 3.953 19 F -0.117 7.117 20 C -0.066 4.066 21 O -0.285 6.285 22 H 0.118 0.882 23 H 0.184 0.816 24 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -1.366 -0.572 1.391 2.032 hybrid contribution 0.275 0.154 -0.886 0.940 sum -1.091 -0.419 0.505 1.274 Atomic orbital electron populations 1.69765 1.09209 1.32815 1.29475 1.27006 0.95575 1.05135 0.90562 0.84948 0.79022 0.74501 0.79991 1.18197 1.18631 1.18018 1.19861 0.98896 0.90464 1.35669 0.88105 1.18958 0.93132 0.92787 0.92557 1.22739 0.95872 0.93584 0.97129 1.66858 1.31758 0.97732 1.24276 1.18456 0.96574 0.84707 1.07284 1.86322 1.41103 1.31962 1.64184 1.19037 0.78007 0.73770 0.76539 1.93254 1.65721 1.74631 1.81410 1.93251 1.83825 1.42006 1.92530 1.93250 1.90245 1.82752 1.48742 1.17792 0.95156 0.80819 1.01517 1.91381 1.89885 1.41434 1.89010 1.18220 0.95075 0.89917 1.03361 1.84682 1.27948 1.95233 1.20647 0.88203 0.81555 0.75374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -33.78 10.97 21.82 0.24 -33.54 14 2 C 0.04 1.55 5.15 85.22 0.44 1.99 14 3 Si 1.00 30.77 29.59 68.60 2.03 32.80 14 4 H -0.26 -7.68 7.11 99.48 0.71 -6.97 14 5 H -0.26 -7.73 7.11 99.48 0.71 -7.02 14 6 H -0.26 -7.97 7.11 99.48 0.71 -7.26 14 7 C -0.42 -18.90 8.76 23.37 0.20 -18.69 14 8 H 0.10 4.36 7.71 -2.91 -0.02 4.34 14 9 C 0.03 1.52 5.59 -21.09 -0.12 1.40 14 10 C 0.07 3.55 9.89 85.34 0.84 4.40 14 11 N -0.49 -23.73 8.00 -306.62 -2.45 -26.18 14 12 C 0.10 4.83 7.20 84.78 0.61 5.44 14 13 O -0.32 -14.06 10.20 -88.82 -0.91 -14.97 14 14 C 0.62 23.91 3.50 113.37 0.40 24.31 14 15 F -0.17 -6.69 16.53 44.97 0.74 -5.95 14 16 F -0.13 -4.44 17.53 44.97 0.79 -3.65 14 17 F -0.17 -6.60 16.53 44.97 0.74 -5.86 14 18 C 0.07 3.30 7.34 22.57 0.17 3.46 14 19 F -0.14 -6.22 16.99 44.97 0.76 -5.46 14 20 C -0.01 -0.61 6.80 23.24 0.16 -0.45 14 21 O -0.48 -19.41 12.82 -89.35 -1.15 -20.55 14 22 H 0.31 11.57 8.30 -92.71 -0.77 10.80 14 23 H 0.17 8.01 6.16 -2.91 -0.02 7.99 14 24 H 0.39 12.27 9.06 -74.06 -0.67 11.60 14 Total: -1.00 -52.16 245.96 4.15 -48.02 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: 0.64 Total: 13.48 kcal Atomic # 6 Polarization: 19.15 SS G_CDS: 2.70 Total: 21.85 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: -2.21 Total: -59.72 kcal Atomic # 8 Polarization: -33.47 SS G_CDS: -2.05 Total: -35.52 kcal Atomic # 9 Polarization: -23.95 SS G_CDS: 3.04 Total: -20.91 kcal Atomic # 14 Polarization: 30.77 SS G_CDS: 2.03 Total: 32.80 kcal Total: -52.16 4.15 -48.02 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396070602.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -232.479 kcal (2) G-P(sol) polarization free energy of solvation -52.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -284.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -280.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds