Wall clock time and date at job start Mon Mar 30 2020 05:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30788 * 1 3 3 Si 1.86802 * 120.00211 * 2 1 4 4 H 1.48500 * 109.47356 * 274.89356 * 3 2 1 5 5 H 1.48506 * 109.46748 * 34.89593 * 3 2 1 6 6 H 1.48503 * 109.46966 * 154.88759 * 3 2 1 7 7 C 1.39982 * 120.00127 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99648 * 348.19111 * 7 2 1 9 9 C 1.41084 * 120.00227 * 168.18601 * 7 2 1 10 10 C 1.40674 * 119.71847 * 155.64062 * 9 7 2 11 11 C 1.38247 * 119.15913 * 180.28257 * 10 9 7 12 12 F 1.35098 * 120.71501 * 179.72765 * 11 10 9 13 13 C 1.39586 * 118.56828 * 359.45405 * 11 10 9 14 14 O 1.35759 * 120.31827 * 180.26877 * 13 11 10 15 15 C 1.40126 * 119.35872 * 0.52853 * 13 11 10 16 16 O 1.35659 * 119.59550 * 179.76713 * 15 13 11 17 17 C 1.42902 * 116.99938 * 185.33452 * 16 15 13 18 18 F 1.39901 * 109.47069 * 65.00874 * 17 16 15 19 19 F 1.39893 * 109.47417 * 185.01183 * 17 16 15 20 20 F 1.39909 * 109.46966 * 305.01274 * 17 16 15 21 21 N 1.31709 * 120.80102 * 359.73781 * 15 13 11 22 22 H 0.97002 * 120.00064 * 0.02562 * 1 2 3 23 23 H 1.08008 * 120.41695 * 0.02562 * 10 9 7 24 24 H 0.96701 * 114.00236 * 270.25958 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 2.3861 2.1062 -1.3949 5 1 1.4949 2.6206 0.8010 6 1 3.5874 1.4124 0.5942 7 6 2.0078 -1.2123 -0.0005 8 1 1.4850 -2.1377 0.1904 9 6 3.3962 -1.2251 -0.2507 10 6 4.1821 -2.2872 0.2324 11 6 5.5423 -2.2852 -0.0144 12 9 6.3275 -3.2865 0.4395 13 6 6.0862 -1.2292 -0.7476 14 8 7.4166 -1.1943 -1.0152 15 6 5.2464 -0.2027 -1.2000 16 8 5.7706 0.8283 -1.9089 17 6 4.8879 1.9018 -2.2418 18 9 4.4720 2.5438 -1.0705 19 9 5.5553 2.8166 -3.0633 20 9 3.7723 1.3957 -2.9175 21 7 3.9543 -0.2271 -0.9458 22 1 -0.4850 0.8401 -0.0004 23 1 3.7290 -3.0919 0.7925 24 1 7.9414 -0.7394 -0.3423 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396070805.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:33 Heat of formation + Delta-G solvation = -268.643680 kcal Electronic energy + Delta-G solvation = -21194.727368 eV Core-core repulsion = 16993.558095 eV Total energy + Delta-G solvation = -4201.169273 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.030 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -51.51252 -49.98055 -49.26884 -49.00812 -41.56687 -39.11803 -38.16677 -35.56613 -32.39545 -31.85447 -28.14217 -26.76389 -24.27261 -23.69204 -21.00862 -20.64451 -20.27002 -19.86073 -19.34582 -18.14136 -17.73909 -17.31863 -16.98446 -16.71127 -16.29260 -16.10292 -15.89770 -15.70703 -15.54375 -15.32289 -15.18731 -15.09640 -14.50069 -14.36900 -14.22885 -13.70858 -13.34362 -12.69161 -12.48435 -12.25868 -11.76930 -11.30197 -10.38382 -10.18461 -9.73953 -9.08477 -6.94698 0.08669 0.20781 0.33326 1.37199 1.38992 1.52645 1.76449 2.17259 2.19580 2.78111 2.93339 3.09468 3.11754 3.31923 3.56127 4.09901 4.20097 4.79550 4.91017 4.98025 5.21638 5.58242 5.87032 6.17195 6.31758 6.81554 7.07089 7.86161 Molecular weight = 267.03amu Principal moments of inertia in cm(-1) A = 0.016132 B = 0.013559 C = 0.008004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.301941 B = 2064.584807 C = 3497.467260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.057 3.943 3 Si 1.032 2.968 4 H -0.275 1.275 5 H -0.307 1.307 6 H -0.281 1.281 7 C -0.407 4.407 8 H 0.101 0.899 9 C 0.273 3.727 10 C -0.280 4.280 11 C 0.173 3.827 12 F -0.125 7.125 13 C -0.112 4.112 14 O -0.476 6.476 15 C 0.339 3.661 16 O -0.303 6.303 17 C 0.608 3.392 18 F -0.166 7.166 19 F -0.127 7.127 20 F -0.158 7.158 21 N -0.609 5.609 22 H 0.304 0.696 23 H 0.152 0.848 24 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.493 3.645 -0.555 8.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.166 4.166 3 Si 0.864 3.136 4 H -0.202 1.202 5 H -0.238 1.238 6 H -0.208 1.208 7 C -0.437 4.437 8 H 0.119 0.881 9 C 0.152 3.848 10 C -0.302 4.302 11 C 0.148 3.852 12 F -0.103 7.103 13 C -0.164 4.164 14 O -0.283 6.283 15 C 0.156 3.844 16 O -0.217 6.217 17 C 0.517 3.483 18 F -0.148 7.148 19 F -0.109 7.109 20 F -0.140 7.140 21 N -0.343 5.343 22 H 0.115 0.885 23 H 0.169 0.831 24 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 6.752 4.014 -1.418 7.982 hybrid contribution 0.588 0.307 0.629 0.914 sum 7.340 4.321 -0.789 8.554 Atomic orbital electron populations 1.69618 1.09051 1.32754 1.30829 1.26968 0.95466 1.05193 0.88995 0.84733 0.75721 0.74604 0.78555 1.20168 1.23759 1.20769 1.19561 0.89960 0.96451 1.37717 0.88125 1.17937 0.93405 0.85972 0.87527 1.21833 0.90998 1.05418 1.11992 1.17575 0.88593 0.85240 0.93775 1.91457 1.74351 1.57859 1.86645 1.17359 0.84962 0.98064 1.15975 1.84878 1.13321 1.79721 1.50385 1.19670 0.89571 0.84744 0.90373 1.86532 1.37619 1.27968 1.69606 1.19285 0.75489 0.78344 0.75147 1.93050 1.89596 1.82838 1.49365 1.93285 1.81114 1.64755 1.71698 1.93317 1.53443 1.86947 1.80300 1.67101 1.09115 1.32499 1.25540 0.88513 0.83050 0.75890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -39.28 13.93 21.83 0.30 -38.98 14 2 C 0.06 2.78 5.51 85.27 0.47 3.25 14 3 Si 1.03 46.09 21.68 68.60 1.49 47.58 14 4 H -0.28 -12.16 4.83 99.48 0.48 -11.68 14 5 H -0.31 -13.06 7.11 99.48 0.71 -12.36 14 6 H -0.28 -12.95 5.97 99.48 0.59 -12.35 14 7 C -0.41 -20.00 9.65 23.39 0.23 -19.78 14 8 H 0.10 4.99 8.06 -2.91 -0.02 4.96 14 9 C 0.27 12.73 5.95 40.13 0.24 12.97 14 10 C -0.28 -11.56 9.81 22.87 0.22 -11.34 14 11 C 0.17 6.83 7.38 22.60 0.17 6.99 14 12 F -0.12 -4.51 17.18 44.97 0.77 -3.74 14 13 C -0.11 -4.49 6.79 23.05 0.16 -4.33 14 14 O -0.48 -16.55 13.20 -77.10 -1.02 -17.57 14 15 C 0.34 14.61 7.24 85.17 0.62 15.22 14 16 O -0.30 -11.96 10.14 -76.00 -0.77 -12.73 14 17 C 0.61 22.85 3.42 113.37 0.39 23.24 14 18 F -0.17 -6.47 11.59 44.97 0.52 -5.95 14 19 F -0.13 -3.99 17.53 44.97 0.79 -3.20 14 20 F -0.16 -6.50 14.08 44.97 0.63 -5.86 14 21 N -0.61 -28.39 3.76 -302.08 -1.14 -29.53 14 22 H 0.30 13.48 8.30 -92.71 -0.77 12.71 14 23 H 0.15 5.62 8.06 -2.91 -0.02 5.59 14 24 H 0.39 9.63 9.06 -74.06 -0.67 8.96 14 Total: -1.00 -52.26 230.20 4.36 -47.89 By element: Atomic # 1 Polarization: -4.45 SS G_CDS: 0.29 Total: -4.15 kcal Atomic # 6 Polarization: 23.75 SS G_CDS: 2.49 Total: 26.23 kcal Atomic # 7 Polarization: -67.67 SS G_CDS: -0.83 Total: -68.50 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -1.79 Total: -30.30 kcal Atomic # 9 Polarization: -21.47 SS G_CDS: 2.72 Total: -18.75 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 1.49 Total: 47.58 kcal Total: -52.26 4.36 -47.89 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396070805.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -220.749 kcal (2) G-P(sol) polarization free energy of solvation -52.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -273.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -268.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds