Wall clock time and date at job start Mon Mar 30 2020 05:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30772 * 1 3 3 Si 1.86801 * 120.00312 * 2 1 4 4 H 1.48500 * 109.47099 * 240.00015 * 3 2 1 5 5 H 1.48499 * 109.47108 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47343 * 119.99774 * 3 2 1 7 7 C 1.39992 * 119.99992 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99928 * 180.02562 * 7 2 1 9 9 C 1.41245 * 119.99894 * 0.02562 * 7 2 1 10 10 C 1.40506 * 119.74614 * 180.27492 * 9 7 2 11 11 C 1.38759 * 119.07247 * 180.27246 * 10 9 7 12 12 O 1.35820 * 120.73599 * 179.73139 * 11 10 9 13 13 C 1.39516 * 118.52914 * 359.45971 * 11 10 9 14 14 F 1.35095 * 120.30024 * 180.25454 * 13 11 10 15 15 C 1.39597 * 119.39852 * 0.27671 * 13 11 10 16 16 O 1.35656 * 119.54896 * 179.97438 * 15 13 11 17 17 C 1.42904 * 116.99910 * 180.02562 * 16 15 13 18 18 F 1.39893 * 109.47128 * 59.99867 * 17 16 15 19 19 F 1.39906 * 109.47070 * 180.02562 * 17 16 15 20 20 F 1.39898 * 109.46785 * 299.99582 * 17 16 15 21 21 N 1.31836 * 120.89818 * 359.97438 * 15 13 11 22 22 H 0.97000 * 119.99567 * 0.02562 * 1 2 3 23 23 H 1.08000 * 120.46464 * 0.02562 * 10 9 7 24 24 H 0.96700 * 114.00259 * 269.72336 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2418 1.6177 0.0000 4 1 3.0956 1.6963 -1.2125 5 1 1.2769 2.7465 -0.0006 6 1 3.0955 1.6964 1.2125 7 6 2.0077 -1.2124 0.0005 8 1 3.0877 -1.2124 0.0010 9 6 1.3014 -2.4356 0.0005 10 6 2.0093 -3.6493 0.0069 11 6 1.3014 -4.8427 0.0011 12 8 1.9514 -6.0353 0.0015 13 6 -0.0927 -4.7905 0.0006 14 9 -0.8175 -5.9306 0.0001 15 6 -0.7320 -3.5495 0.0000 16 8 -2.0875 -3.4952 -0.0010 17 6 -2.6848 -2.1970 -0.0021 18 9 -2.2797 -1.4983 -1.1443 19 9 -4.0780 -2.3246 -0.0024 20 9 -2.2814 -1.4972 1.1402 21 7 -0.0364 -2.4296 0.0005 22 1 -0.4849 0.8401 -0.0004 23 1 3.0893 -3.6533 0.0123 24 1 2.1400 -6.3808 -0.8818 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396074985.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:38 Heat of formation + Delta-G solvation = -272.777102 kcal Electronic energy + Delta-G solvation = -21008.406184 eV Core-core repulsion = 16807.057673 eV Total energy + Delta-G solvation = -4201.348511 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.030 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -51.02479 -49.36294 -48.83788 -48.56516 -41.02920 -39.43121 -37.87230 -35.32923 -31.68852 -31.34462 -28.04225 -26.55399 -23.93653 -23.59683 -20.97386 -20.32978 -19.82010 -19.43551 -18.50202 -17.97599 -17.49935 -17.30758 -16.74820 -16.37104 -15.73732 -15.62242 -15.40677 -15.13293 -15.01333 -14.80702 -14.72371 -14.71490 -14.58333 -14.01611 -13.88086 -13.46623 -13.18798 -12.68075 -12.63726 -12.08569 -11.59472 -11.12796 -10.23564 -10.05751 -9.52870 -8.52571 -6.72747 0.41988 0.53952 0.63070 1.46321 1.53815 1.58834 2.12122 2.19756 2.55383 3.14533 3.26477 3.29805 3.52509 3.59816 3.84427 4.25825 4.70360 5.03303 5.09216 5.28797 5.36775 5.76463 6.06112 6.40016 6.64755 6.83055 7.56034 8.24094 Molecular weight = 267.03amu Principal moments of inertia in cm(-1) A = 0.015939 B = 0.011131 C = 0.006837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.235140 B = 2514.990658 C = 4094.176239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.721 5.721 2 C 0.020 3.980 3 Si 0.995 3.005 4 H -0.255 1.255 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.410 4.410 8 H 0.115 0.885 9 C 0.245 3.755 10 C -0.282 4.282 11 C 0.172 3.828 12 O -0.491 6.491 13 C -0.160 4.160 14 F -0.155 7.155 15 C 0.308 3.692 16 O -0.328 6.328 17 C 0.620 3.380 18 F -0.158 7.158 19 F -0.141 7.141 20 F -0.159 7.159 21 N -0.527 5.527 22 H 0.286 0.714 23 H 0.146 0.854 24 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.630 0.423 -1.781 1.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.340 5.340 2 C -0.206 4.206 3 Si 0.814 3.186 4 H -0.179 1.179 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.439 4.439 8 H 0.133 0.867 9 C 0.123 3.877 10 C -0.305 4.305 11 C 0.121 3.879 12 O -0.304 6.304 13 C -0.186 4.186 14 F -0.134 7.134 15 C 0.121 3.879 16 O -0.244 6.244 17 C 0.529 3.471 18 F -0.140 7.140 19 F -0.123 7.123 20 F -0.141 7.141 21 N -0.255 5.255 22 H 0.097 0.903 23 H 0.164 0.836 24 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -0.208 1.209 -1.184 1.705 hybrid contribution 0.048 -0.286 -0.459 0.543 sum -0.160 0.923 -1.643 1.891 Atomic orbital electron populations 1.70149 1.08985 1.30249 1.24615 1.27098 0.95779 1.04903 0.92816 0.85039 0.78464 0.74709 0.80353 1.17865 1.19866 1.18078 1.20207 0.95902 0.89089 1.38681 0.86726 1.18455 0.85784 0.93674 0.89779 1.22094 1.01091 0.90391 1.16896 1.17984 0.86408 0.86372 0.97117 1.84661 1.76750 1.33634 1.35308 1.17572 0.89131 0.79318 1.32538 1.91279 1.77594 1.48142 1.96420 1.19734 0.81316 0.90817 0.95988 1.86452 1.20425 1.28471 1.89007 1.19028 0.75193 0.77440 0.75435 1.93271 1.90448 1.79339 1.50930 1.93231 1.26837 1.95706 1.96523 1.93273 1.90515 1.79317 1.51018 1.68432 1.10227 1.21806 1.25000 0.90296 0.83610 0.72949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -34.31 10.86 21.83 0.24 -34.07 14 2 C 0.02 0.88 5.50 85.28 0.47 1.35 14 3 Si 0.99 32.97 29.56 68.60 2.03 35.00 14 4 H -0.25 -8.09 7.11 99.48 0.71 -7.39 14 5 H -0.27 -8.96 7.11 99.48 0.71 -8.26 14 6 H -0.26 -8.25 7.11 99.48 0.71 -7.54 14 7 C -0.41 -18.84 9.13 23.43 0.21 -18.63 14 8 H 0.11 4.66 7.85 -2.91 -0.02 4.64 14 9 C 0.24 12.05 6.55 40.14 0.26 12.32 14 10 C -0.28 -12.30 9.79 22.95 0.22 -12.08 14 11 C 0.17 7.39 6.77 22.70 0.15 7.55 14 12 O -0.49 -17.37 13.43 -91.53 -1.23 -18.60 14 13 C -0.16 -7.62 7.39 22.91 0.17 -7.45 14 14 F -0.15 -7.23 17.01 44.97 0.76 -6.46 14 15 C 0.31 15.45 7.21 85.02 0.61 16.07 14 16 O -0.33 -15.54 10.22 -89.72 -0.92 -16.46 14 17 C 0.62 26.88 3.50 113.37 0.40 27.28 14 18 F -0.16 -7.14 16.25 44.97 0.73 -6.41 14 19 F -0.14 -5.24 17.53 44.97 0.79 -4.45 14 20 F -0.16 -7.28 16.25 44.97 0.73 -6.55 14 21 N -0.53 -27.21 5.54 -302.39 -1.67 -28.88 14 22 H 0.29 12.55 8.29 -92.71 -0.77 11.78 14 23 H 0.15 5.54 8.06 -2.91 -0.02 5.51 14 24 H 0.41 9.80 9.06 -74.06 -0.67 9.13 14 Total: -1.00 -57.20 247.05 4.60 -52.61 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: 0.63 Total: 7.87 kcal Atomic # 6 Polarization: 23.90 SS G_CDS: 2.50 Total: 26.40 kcal Atomic # 7 Polarization: -61.52 SS G_CDS: -1.44 Total: -62.95 kcal Atomic # 8 Polarization: -32.91 SS G_CDS: -2.15 Total: -35.06 kcal Atomic # 9 Polarization: -26.88 SS G_CDS: 3.01 Total: -23.87 kcal Atomic # 14 Polarization: 32.97 SS G_CDS: 2.03 Total: 35.00 kcal Total: -57.20 4.60 -52.61 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396074985.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -220.172 kcal (2) G-P(sol) polarization free energy of solvation -57.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -277.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -272.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds