Wall clock time and date at job start Mon Mar 30 2020 04:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09008 * 109.47152 * 2 1 4 4 N 1.46892 * 109.47466 * 239.99559 * 2 1 3 5 5 C 1.46907 * 110.99826 * 83.52262 * 4 2 1 6 6 C 1.53043 * 109.45751 * 204.95814 * 5 4 2 7 7 C 1.53190 * 109.31311 * 178.61610 * 6 5 4 8 8 N 1.46926 * 108.77412 * 54.63338 * 7 6 5 9 9 C 1.36938 * 120.62532 * 126.41563 * 8 7 6 10 10 H 1.08005 * 119.99417 * 209.29383 * 9 8 7 11 11 C 1.38810 * 120.00382 * 29.28770 * 9 8 7 12 12 N 1.31613 * 119.99875 * 13.35611 * 11 9 8 13 13 Si 1.86801 * 120.00098 * 193.35174 * 11 9 8 14 14 H 1.48498 * 109.46833 * 90.00075 * 13 11 9 15 15 H 1.48497 * 109.47047 * 210.00109 * 13 11 9 16 16 H 1.48502 * 109.47368 * 330.00326 * 13 11 9 17 17 C 1.46924 * 118.74119 * 306.39547 * 8 7 6 18 18 C 1.53036 * 109.45963 * 84.89635 * 5 4 2 19 19 C 1.52999 * 109.47084 * 119.99105 * 2 1 3 20 20 H 1.09000 * 115.54913 * 41.45054 * 19 2 1 21 21 C 1.52996 * 117.50570 * 255.73898 * 19 2 1 22 22 C 1.52996 * 60.00224 * 252.51011 * 21 19 2 23 23 C 1.52998 * 117.50111 * 252.50667 * 22 21 19 24 24 C 1.53005 * 117.51922 * 107.47396 * 22 21 19 25 25 H 1.08999 * 109.46841 * 184.53809 * 1 2 3 26 26 H 1.09009 * 109.47282 * 304.53956 * 1 2 3 27 27 H 1.08997 * 109.46904 * 64.53633 * 1 2 3 28 28 H 1.00894 * 111.00264 * 207.48238 * 4 2 1 29 29 H 1.08996 * 109.46123 * 324.91694 * 5 4 2 30 30 H 1.08999 * 109.50328 * 298.57104 * 6 5 4 31 31 H 1.09003 * 109.49690 * 58.67066 * 6 5 4 32 32 H 1.09008 * 109.58396 * 294.85192 * 7 6 5 33 33 H 1.08992 * 109.58856 * 174.42507 * 7 6 5 34 34 H 0.97001 * 120.00531 * 179.97438 * 12 11 9 35 35 H 1.09000 * 109.58561 * 293.81367 * 17 8 7 36 36 H 1.09003 * 109.58689 * 173.39509 * 17 8 7 37 37 H 1.09004 * 109.49364 * 301.33847 * 18 5 4 38 38 H 1.09002 * 109.49891 * 61.42558 * 18 5 4 39 39 H 1.09006 * 117.49507 * 359.97438 * 21 19 2 40 40 H 1.08993 * 117.50540 * 145.02003 * 21 19 2 41 41 H 1.09003 * 109.47114 * 128.61498 * 23 22 21 42 42 H 1.08994 * 109.47021 * 248.62340 * 23 22 21 43 43 H 1.09001 * 109.46625 * 8.62594 * 23 22 21 44 44 H 1.08997 * 109.47092 * 342.97325 * 24 22 21 45 45 H 1.08999 * 109.46616 * 102.96555 * 24 22 21 46 46 H 1.09000 * 109.47184 * 222.96672 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0198 -0.6925 -1.1993 5 6 2.0494 0.2136 -2.3552 6 6 1.9463 -0.6027 -3.6457 7 6 1.9427 0.3475 -4.8473 8 7 3.1299 1.2098 -4.7719 9 6 3.9927 1.3032 -5.8312 10 1 5.0380 1.5138 -5.6592 11 6 3.5239 1.1271 -7.1258 12 7 2.2295 1.1331 -7.3635 13 14 4.7304 0.8817 -8.5307 14 1 5.0062 -0.5677 -8.6988 15 1 4.1471 1.4233 -9.7843 16 1 5.9970 1.5945 -8.2258 17 6 3.3736 1.9702 -3.5386 18 6 3.3612 1.0018 -2.3517 19 6 2.0400 -0.7211 1.2493 20 1 1.5018 -1.6292 1.5206 21 6 2.5907 0.1407 2.3872 22 6 3.5452 -0.6841 1.5215 23 6 4.1795 -1.9244 2.1540 24 6 4.4252 0.0708 0.5231 25 1 -0.3633 -1.0244 0.0813 26 1 -0.3634 0.5827 0.8466 27 1 -0.3633 0.4418 -0.9278 28 1 2.9281 -1.1001 -1.0359 29 1 1.2096 0.9058 -2.2956 30 1 2.7990 -1.2778 -3.7183 31 1 1.0229 -1.1818 -3.6371 32 1 1.0427 0.9621 -4.8244 33 1 1.9693 -0.2310 -5.7707 34 1 1.9018 1.0104 -8.2682 35 1 2.5904 2.7171 -3.4091 36 1 4.3444 2.4623 -3.5985 37 1 3.4449 1.5646 -1.4219 38 1 4.2006 0.3116 -2.4364 39 1 2.5901 1.2216 2.2456 40 1 2.4147 -0.2002 3.4074 41 1 4.0257 -2.7839 1.5015 42 1 5.2480 -1.7572 2.2891 43 1 3.7163 -2.1157 3.1220 44 1 4.0233 1.0723 0.3693 45 1 5.4397 0.1428 0.9151 46 1 4.4395 -0.4648 -0.4261 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618723654.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:01 Heat of formation + Delta-G solvation = 30.176149 kcal Electronic energy + Delta-G solvation = -21624.481437 eV Core-core repulsion = 18742.638050 eV Total energy + Delta-G solvation = -2881.843387 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.58975 -37.58218 -34.96251 -32.57403 -30.79225 -29.95391 -28.82223 -27.96932 -27.60869 -24.77370 -23.23556 -22.04136 -21.14002 -20.45201 -19.43737 -18.47451 -16.78238 -15.78911 -15.22885 -14.77944 -14.51613 -14.20389 -13.89261 -13.60361 -13.38773 -13.01022 -12.93848 -12.78347 -12.50855 -12.31102 -12.16782 -11.98046 -11.82533 -11.64874 -11.39271 -11.23706 -10.99387 -10.79218 -10.68486 -10.65072 -10.21558 -10.11474 -10.09181 -9.89594 -9.64611 -9.48658 -9.36411 -8.44420 -7.91984 -6.59929 -5.73713 -3.19046 3.40015 3.46463 3.47644 3.55261 4.35529 4.52449 4.56691 4.65772 4.90916 4.98068 5.19434 5.32638 5.37309 5.45741 5.53757 5.56784 5.58706 5.61766 5.66462 5.75448 5.80281 5.83813 5.86531 5.90318 5.96140 6.06920 6.08899 6.12049 6.21291 6.24412 6.39619 6.41654 6.58797 6.68987 6.72981 6.77992 6.92303 7.00383 7.45438 7.51099 7.75953 7.81827 7.84454 8.51520 9.27000 9.89586 10.47033 11.34261 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.031541 B = 0.004474 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.516881 B = 6256.560671 C = 6673.893723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.115 3.885 3 H 0.041 0.959 4 N -0.683 5.683 5 C 0.096 3.904 6 C -0.125 4.125 7 C 0.171 3.829 8 N -0.592 5.592 9 C -0.251 4.251 10 H 0.063 0.937 11 C 0.002 3.998 12 N -0.905 5.905 13 Si 0.903 3.097 14 H -0.287 1.287 15 H -0.291 1.291 16 H -0.280 1.280 17 C 0.149 3.851 18 C -0.160 4.160 19 C -0.140 4.140 20 H 0.105 0.895 21 C -0.171 4.171 22 C -0.128 4.128 23 C -0.114 4.114 24 C -0.122 4.122 25 H 0.058 0.942 26 H 0.050 0.950 27 H 0.056 0.944 28 H 0.339 0.661 29 H 0.067 0.933 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.015 0.985 33 H 0.090 0.910 34 H 0.253 0.747 35 H 0.014 0.986 36 H 0.050 0.950 37 H 0.046 0.954 38 H 0.058 0.942 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.054 0.946 44 H 0.059 0.941 45 H 0.058 0.942 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.074 -3.629 18.245 18.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.005 3.995 3 H 0.059 0.941 4 N -0.315 5.315 5 C -0.014 4.014 6 C -0.165 4.165 7 C 0.045 3.955 8 N -0.315 5.315 9 C -0.381 4.381 10 H 0.081 0.919 11 C -0.196 4.196 12 N -0.549 5.549 13 Si 0.733 3.267 14 H -0.214 1.214 15 H -0.217 1.217 16 H -0.205 1.205 17 C 0.022 3.978 18 C -0.201 4.201 19 C -0.159 4.159 20 H 0.124 0.876 21 C -0.208 4.208 22 C -0.128 4.128 23 C -0.171 4.171 24 C -0.179 4.179 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.159 0.841 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.033 0.967 33 H 0.108 0.892 34 H 0.063 0.937 35 H 0.032 0.968 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.623 -3.905 17.909 18.340 hybrid contribution 1.295 0.472 -0.476 1.459 sum 0.672 -3.432 17.433 17.781 Atomic orbital electron populations 1.21759 0.94667 1.01863 1.01100 1.21007 0.95420 0.95123 0.87935 0.94092 1.60810 1.32636 1.34605 1.03465 1.21551 0.96457 0.92992 0.90369 1.22178 1.00420 0.98813 0.95040 1.20826 0.88047 0.91105 0.95569 1.44047 1.27280 1.48336 1.11834 1.19195 0.89682 1.44380 0.84819 0.91885 1.25083 0.95720 1.01368 0.97417 1.69995 1.11524 1.53631 1.19780 0.86274 0.80461 0.77952 0.81973 1.21445 1.21744 1.20507 1.20826 0.98320 0.92089 0.86601 1.22789 0.98439 0.99959 0.98877 1.22631 0.95368 1.01231 0.96664 0.87645 1.23249 1.03943 0.98014 0.95624 1.21578 0.91368 0.98816 1.01053 1.21333 1.00262 0.95764 0.99744 1.21599 0.98679 0.99527 0.98096 0.92321 0.93140 0.92450 0.84081 0.91456 0.93040 0.92843 0.96673 0.89220 0.93661 0.96764 0.93106 0.93518 0.92339 0.89008 0.89010 0.92062 0.92256 0.92722 0.92198 0.92296 0.91563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.41 37.16 0.35 -1.31 16 2 C 0.11 1.45 1.90 -67.72 -0.13 1.32 16 3 H 0.04 0.56 6.17 -51.92 -0.32 0.24 16 4 N -0.68 -9.99 5.97 -99.69 -0.60 -10.59 16 5 C 0.10 1.65 2.23 -67.67 -0.15 1.49 16 6 C -0.12 -2.49 5.69 -26.61 -0.15 -2.64 16 7 C 0.17 4.16 5.28 -3.71 -0.02 4.14 16 8 N -0.59 -15.05 2.99 -172.32 -0.52 -15.57 16 9 C -0.25 -6.98 9.59 -15.06 -0.14 -7.13 16 10 H 0.06 1.73 7.86 -52.48 -0.41 1.31 16 11 C 0.00 0.07 5.00 -17.43 -0.09 -0.02 16 12 N -0.90 -26.54 11.05 55.49 0.61 -25.92 16 13 Si 0.90 21.93 29.57 -169.99 -5.03 16.90 16 14 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 15 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 C 0.15 3.18 6.52 -3.71 -0.02 3.15 16 18 C -0.16 -2.78 4.25 -26.62 -0.11 -2.90 16 19 C -0.14 -1.52 4.88 -90.62 -0.44 -1.97 16 20 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 21 C -0.17 -1.65 9.47 -26.73 -0.25 -1.90 16 22 C -0.13 -1.31 2.46 -154.51 -0.38 -1.69 16 23 C -0.11 -1.02 9.85 37.16 0.37 -0.65 16 24 C -0.12 -1.34 7.79 37.16 0.29 -1.05 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.54 8.14 -51.92 -0.42 0.11 16 27 H 0.06 0.77 7.26 -51.93 -0.38 0.39 16 28 H 0.34 4.87 5.40 -39.29 -0.21 4.66 16 29 H 0.07 1.22 6.99 -51.93 -0.36 0.86 16 30 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.02 0.39 8.14 -51.92 -0.42 -0.03 16 33 H 0.09 2.45 6.03 -51.93 -0.31 2.14 16 34 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 35 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 37 H 0.05 0.72 5.57 -51.93 -0.29 0.43 16 38 H 0.06 1.05 7.54 -51.93 -0.39 0.66 16 39 H 0.09 0.90 8.06 -51.93 -0.42 0.48 16 40 H 0.09 0.78 8.05 -51.93 -0.42 0.36 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.49 8.02 -51.93 -0.42 0.08 16 43 H 0.05 0.44 7.90 -51.93 -0.41 0.03 16 44 H 0.06 0.70 5.73 -51.93 -0.30 0.40 16 45 H 0.06 0.59 8.06 -51.93 -0.42 0.17 16 46 H 0.07 0.80 4.92 -51.93 -0.26 0.55 16 LS Contribution 340.19 15.07 5.13 5.13 Total: -1.00 -28.56 340.19 -9.53 -38.09 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -8.24 Total: 3.10 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: -0.89 Total: -11.14 kcal Atomic # 7 Polarization: -51.58 SS G_CDS: -0.50 Total: -52.08 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.90 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.56 -9.53 -38.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618723654.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.271 kcal (2) G-P(sol) polarization free energy of solvation -28.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds