Wall clock time and date at job start Mon Mar 30 2020 04:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09008 * 109.47152 * 2 1 4 4 N 1.46892 * 109.47466 * 239.99559 * 2 1 3 5 5 C 1.46907 * 110.99826 * 83.52262 * 4 2 1 6 6 C 1.53043 * 109.45751 * 204.95814 * 5 4 2 7 7 C 1.53190 * 109.31311 * 178.61610 * 6 5 4 8 8 N 1.46926 * 108.77412 * 54.63338 * 7 6 5 9 9 C 1.36938 * 120.62532 * 126.41563 * 8 7 6 10 10 H 1.08005 * 119.99417 * 209.29383 * 9 8 7 11 11 C 1.38810 * 120.00382 * 29.28770 * 9 8 7 12 12 N 1.31613 * 119.99875 * 13.35611 * 11 9 8 13 13 Si 1.86801 * 120.00098 * 193.35174 * 11 9 8 14 14 H 1.48498 * 109.46833 * 90.00075 * 13 11 9 15 15 H 1.48497 * 109.47047 * 210.00109 * 13 11 9 16 16 H 1.48502 * 109.47368 * 330.00326 * 13 11 9 17 17 C 1.46924 * 118.74119 * 306.39547 * 8 7 6 18 18 C 1.53036 * 109.45963 * 84.89635 * 5 4 2 19 19 C 1.52999 * 109.47084 * 119.99105 * 2 1 3 20 20 H 1.09000 * 115.54913 * 41.45054 * 19 2 1 21 21 C 1.52996 * 117.50570 * 255.73898 * 19 2 1 22 22 C 1.52996 * 60.00224 * 252.51011 * 21 19 2 23 23 C 1.52998 * 117.50111 * 252.50667 * 22 21 19 24 24 C 1.53005 * 117.51922 * 107.47396 * 22 21 19 25 25 H 1.08999 * 109.46841 * 184.53809 * 1 2 3 26 26 H 1.09009 * 109.47282 * 304.53956 * 1 2 3 27 27 H 1.08997 * 109.46904 * 64.53633 * 1 2 3 28 28 H 1.00894 * 111.00264 * 207.48238 * 4 2 1 29 29 H 1.08996 * 109.46123 * 324.91694 * 5 4 2 30 30 H 1.08999 * 109.50328 * 298.57104 * 6 5 4 31 31 H 1.09003 * 109.49690 * 58.67066 * 6 5 4 32 32 H 1.09008 * 109.58396 * 294.85192 * 7 6 5 33 33 H 1.08992 * 109.58856 * 174.42507 * 7 6 5 34 34 H 0.97001 * 120.00531 * 179.97438 * 12 11 9 35 35 H 1.09000 * 109.58561 * 293.81367 * 17 8 7 36 36 H 1.09003 * 109.58689 * 173.39509 * 17 8 7 37 37 H 1.09004 * 109.49364 * 301.33847 * 18 5 4 38 38 H 1.09002 * 109.49891 * 61.42558 * 18 5 4 39 39 H 1.09006 * 117.49507 * 359.97438 * 21 19 2 40 40 H 1.08993 * 117.50540 * 145.02003 * 21 19 2 41 41 H 1.09003 * 109.47114 * 128.61498 * 23 22 21 42 42 H 1.08994 * 109.47021 * 248.62340 * 23 22 21 43 43 H 1.09001 * 109.46625 * 8.62594 * 23 22 21 44 44 H 1.08997 * 109.47092 * 342.97325 * 24 22 21 45 45 H 1.08999 * 109.46616 * 102.96555 * 24 22 21 46 46 H 1.09000 * 109.47184 * 222.96672 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0198 -0.6925 -1.1993 5 6 2.0494 0.2136 -2.3552 6 6 1.9463 -0.6027 -3.6457 7 6 1.9427 0.3475 -4.8473 8 7 3.1299 1.2098 -4.7719 9 6 3.9927 1.3032 -5.8312 10 1 5.0380 1.5138 -5.6592 11 6 3.5239 1.1271 -7.1258 12 7 2.2295 1.1331 -7.3635 13 14 4.7304 0.8817 -8.5307 14 1 5.0062 -0.5677 -8.6988 15 1 4.1471 1.4233 -9.7843 16 1 5.9970 1.5945 -8.2258 17 6 3.3736 1.9702 -3.5386 18 6 3.3612 1.0018 -2.3517 19 6 2.0400 -0.7211 1.2493 20 1 1.5018 -1.6292 1.5206 21 6 2.5907 0.1407 2.3872 22 6 3.5452 -0.6841 1.5215 23 6 4.1795 -1.9244 2.1540 24 6 4.4252 0.0708 0.5231 25 1 -0.3633 -1.0244 0.0813 26 1 -0.3634 0.5827 0.8466 27 1 -0.3633 0.4418 -0.9278 28 1 2.9281 -1.1001 -1.0359 29 1 1.2096 0.9058 -2.2956 30 1 2.7990 -1.2778 -3.7183 31 1 1.0229 -1.1818 -3.6371 32 1 1.0427 0.9621 -4.8244 33 1 1.9693 -0.2310 -5.7707 34 1 1.9018 1.0104 -8.2682 35 1 2.5904 2.7171 -3.4091 36 1 4.3444 2.4623 -3.5985 37 1 3.4449 1.5646 -1.4219 38 1 4.2006 0.3116 -2.4364 39 1 2.5901 1.2216 2.2456 40 1 2.4147 -0.2002 3.4074 41 1 4.0257 -2.7839 1.5015 42 1 5.2480 -1.7572 2.2891 43 1 3.7163 -2.1157 3.1220 44 1 4.0233 1.0723 0.3693 45 1 5.4397 0.1428 0.9151 46 1 4.4395 -0.4648 -0.4261 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000618723654.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:00 Heat of formation + Delta-G solvation = 14.594758 kcal Electronic energy + Delta-G solvation = -21625.157096 eV Core-core repulsion = 18742.638050 eV Total energy + Delta-G solvation = -2882.519047 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.62176 -39.05147 -36.43025 -34.23313 -32.38681 -31.62568 -30.04530 -29.12428 -28.43204 -26.59087 -24.47859 -23.71096 -22.67917 -21.44786 -20.91313 -19.52710 -18.69916 -16.95271 -16.84142 -16.28271 -15.65002 -15.42978 -15.31362 -15.14241 -14.75202 -14.53497 -14.36655 -14.07575 -13.67242 -13.37660 -13.21719 -13.04049 -12.96969 -12.95848 -12.73963 -12.61066 -12.52174 -12.41185 -12.13163 -12.01182 -11.90985 -11.86009 -11.57811 -11.37278 -11.14951 -10.84105 -10.55085 -10.30428 -9.17383 -8.66220 -7.86312 -5.35212 1.46534 1.47940 1.56725 2.50878 2.71343 3.25570 3.35093 3.67215 3.71497 3.83358 3.96490 4.09386 4.14349 4.19086 4.26749 4.38566 4.45538 4.53663 4.64719 4.71480 4.78562 4.79239 4.83951 4.88342 4.94722 4.98451 5.03940 5.05207 5.09569 5.12243 5.15454 5.21540 5.28091 5.29635 5.32562 5.35155 5.45092 5.50174 5.53320 5.64599 5.76056 6.25192 6.40993 6.61910 7.15598 7.86059 8.38502 9.19623 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.031541 B = 0.004474 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.516881 B = 6256.560671 C = 6673.893723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.116 3.884 3 H 0.035 0.965 4 N -0.680 5.680 5 C 0.108 3.892 6 C -0.111 4.111 7 C 0.179 3.821 8 N -0.609 5.609 9 C -0.264 4.264 10 H 0.065 0.935 11 C -0.050 4.050 12 N -0.936 5.936 13 Si 0.969 3.031 14 H -0.285 1.285 15 H -0.294 1.294 16 H -0.268 1.268 17 C 0.144 3.856 18 C -0.142 4.142 19 C -0.147 4.147 20 H 0.109 0.891 21 C -0.159 4.159 22 C -0.130 4.130 23 C -0.113 4.113 24 C -0.121 4.121 25 H 0.059 0.941 26 H 0.067 0.933 27 H 0.040 0.960 28 H 0.343 0.657 29 H 0.059 0.941 30 H 0.045 0.955 31 H 0.061 0.939 32 H -0.008 1.008 33 H 0.055 0.945 34 H 0.250 0.750 35 H 0.010 0.990 36 H 0.051 0.949 37 H 0.073 0.927 38 H 0.056 0.944 39 H 0.091 0.909 40 H 0.108 0.892 41 H 0.057 0.943 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.052 0.948 45 H 0.067 0.933 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.993 -4.060 20.383 20.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.007 3.993 3 H 0.053 0.947 4 N -0.313 5.313 5 C -0.002 4.002 6 C -0.150 4.150 7 C 0.053 3.947 8 N -0.333 5.333 9 C -0.394 4.394 10 H 0.083 0.917 11 C -0.245 4.245 12 N -0.583 5.583 13 Si 0.797 3.203 14 H -0.211 1.211 15 H -0.221 1.221 16 H -0.193 1.193 17 C 0.017 3.983 18 C -0.182 4.182 19 C -0.165 4.165 20 H 0.127 0.873 21 C -0.196 4.196 22 C -0.130 4.130 23 C -0.170 4.170 24 C -0.178 4.178 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.059 0.941 28 H 0.164 0.836 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.011 0.989 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.028 0.972 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.109 0.891 40 H 0.126 0.874 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.071 0.929 45 H 0.086 0.914 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.306 -4.335 20.087 20.552 hybrid contribution 0.991 0.647 -1.094 1.611 sum 1.297 -3.689 18.994 19.392 Atomic orbital electron populations 1.21745 0.94344 1.02111 1.00982 1.21034 0.95634 0.94820 0.87807 0.94657 1.60718 1.32946 1.34022 1.03569 1.21259 0.96037 0.92639 0.90238 1.21938 1.00530 0.97882 0.94673 1.20592 0.87030 0.91013 0.96090 1.44293 1.27065 1.49304 1.12662 1.19530 0.90241 1.43859 0.85811 0.91717 1.25856 0.97285 1.01589 0.99794 1.70162 1.13298 1.54868 1.19928 0.85240 0.78658 0.77790 0.78589 1.21140 1.22053 1.19300 1.20989 0.98088 0.92699 0.86476 1.22594 0.98423 0.99124 0.98053 1.22525 0.95993 1.01647 0.96364 0.87325 1.23307 1.02513 0.97841 0.95965 1.21632 0.90827 0.99438 1.01103 1.21337 1.00646 0.94912 1.00079 1.21569 0.99479 0.98956 0.97839 0.92199 0.91385 0.94135 0.83640 0.92227 0.93592 0.92048 0.98948 0.92658 0.94106 0.97236 0.92995 0.90901 0.92517 0.89065 0.87382 0.92438 0.91694 0.91625 0.92932 0.91363 0.92825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 9.41 71.98 0.68 -2.37 16 2 C 0.12 2.71 1.90 44.92 0.09 2.80 16 3 H 0.04 0.88 6.17 -2.38 -0.01 0.87 16 4 N -0.68 -18.85 5.97 -469.32 -2.80 -21.65 16 5 C 0.11 3.64 2.23 44.94 0.10 3.74 16 6 C -0.11 -4.42 5.69 30.67 0.17 -4.25 16 7 C 0.18 9.01 5.28 86.36 0.46 9.47 16 8 N -0.61 -31.53 2.99 -699.11 -2.09 -33.62 16 9 C -0.26 -14.88 9.59 84.03 0.81 -14.07 16 10 H 0.07 3.55 7.86 -2.91 -0.02 3.53 16 11 C -0.05 -2.85 5.00 84.86 0.42 -2.42 16 12 N -0.94 -56.53 11.05 21.65 0.24 -56.29 16 13 Si 0.97 45.57 29.57 68.60 2.03 47.60 16 14 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 15 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 16 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 17 C 0.14 6.11 6.52 86.36 0.56 6.67 16 18 C -0.14 -4.76 4.25 30.67 0.13 -4.63 16 19 C -0.15 -2.80 4.88 -10.79 -0.05 -2.85 16 20 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 21 C -0.16 -2.57 9.47 30.59 0.29 -2.28 16 22 C -0.13 -2.30 2.46 -52.18 -0.13 -2.43 16 23 C -0.11 -1.70 9.85 71.98 0.71 -0.99 16 24 C -0.12 -2.39 7.79 71.98 0.56 -1.83 16 25 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 27 H 0.04 1.05 7.26 -2.39 -0.02 1.03 16 28 H 0.34 9.23 5.40 -89.70 -0.48 8.75 16 29 H 0.06 2.14 6.99 -2.39 -0.02 2.12 16 30 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 32 H -0.01 -0.41 8.14 -2.38 -0.02 -0.43 16 33 H 0.06 3.15 6.03 -2.39 -0.01 3.14 16 34 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 35 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.05 2.16 7.93 -2.39 -0.02 2.14 16 37 H 0.07 2.09 5.57 -2.38 -0.01 2.08 16 38 H 0.06 1.95 7.54 -2.39 -0.02 1.94 16 39 H 0.09 1.51 8.06 -2.38 -0.02 1.49 16 40 H 0.11 1.42 8.05 -2.39 -0.02 1.41 16 41 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.06 0.91 8.02 -2.39 -0.02 0.89 16 43 H 0.06 0.84 7.90 -2.39 -0.02 0.83 16 44 H 0.05 1.10 5.73 -2.39 -0.01 1.08 16 45 H 0.07 1.21 8.06 -2.39 -0.02 1.19 16 46 H 0.05 1.19 4.92 -2.39 -0.01 1.18 16 Total: -1.00 -61.80 340.19 2.62 -59.18 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: 0.45 Total: 20.22 kcal Atomic # 6 Polarization: -20.24 SS G_CDS: 4.79 Total: -15.44 kcal Atomic # 7 Polarization: -106.91 SS G_CDS: -4.66 Total: -111.56 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -61.80 2.62 -59.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618723654.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.775 kcal (2) G-P(sol) polarization free energy of solvation -61.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds