Wall clock time and date at job start Mon Mar 30 2020 04:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 110.27282 * 2 1 4 4 C 1.54587 * 110.39364 * 122.14602 * 2 1 3 5 5 C 1.54943 * 102.92246 * 140.91766 * 4 2 1 6 6 N 1.48533 * 103.22361 * 322.58584 * 5 4 2 7 7 C 1.46903 * 110.99798 * 159.71489 * 6 5 4 8 8 C 1.53005 * 109.46954 * 52.60824 * 7 6 5 9 9 N 1.46894 * 109.47096 * 180.02562 * 8 7 6 10 10 C 1.46847 * 110.99976 * 189.99779 * 9 8 7 11 11 C 1.53033 * 109.52573 * 185.83829 * 10 9 8 12 12 C 1.53119 * 109.27673 * 300.81824 * 11 10 9 13 13 C 1.50702 * 109.52248 * 177.55790 * 12 11 10 14 14 H 1.08002 * 120.00299 * 0.13319 * 13 12 11 15 15 C 1.37884 * 119.99942 * 179.84877 * 13 12 11 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48501 * 109.47188 * 90.00793 * 17 15 13 19 19 H 1.48501 * 109.47085 * 210.00372 * 17 15 13 20 20 H 1.48498 * 109.47634 * 330.00608 * 17 15 13 21 21 C 1.53118 * 109.21117 * 57.62443 * 12 11 10 22 22 C 1.46841 * 110.99985 * 314.20278 * 9 8 7 23 23 C 1.47901 * 105.82045 * 39.20800 * 6 5 4 24 24 H 1.09002 * 109.46453 * 182.08762 * 1 2 3 25 25 H 1.08993 * 109.47257 * 302.08285 * 1 2 3 26 26 H 1.08999 * 109.47404 * 62.08738 * 1 2 3 27 27 H 1.08998 * 110.72862 * 259.27223 * 4 2 1 28 28 H 1.09001 * 110.72920 * 22.38789 * 4 2 1 29 29 H 1.08997 * 110.67109 * 204.15353 * 5 4 2 30 30 H 1.09001 * 110.66432 * 81.02175 * 5 4 2 31 31 H 1.08997 * 109.47456 * 292.61071 * 7 6 5 32 32 H 1.08998 * 109.47374 * 172.60315 * 7 6 5 33 33 H 1.08995 * 109.47274 * 59.99238 * 8 7 6 34 34 H 1.09005 * 109.46909 * 299.99624 * 8 7 6 35 35 H 1.09003 * 109.46420 * 65.81624 * 10 9 8 36 36 H 1.09003 * 109.46395 * 305.85278 * 10 9 8 37 37 H 1.09001 * 109.50499 * 180.88280 * 11 10 9 38 38 H 1.08993 * 109.53685 * 60.78110 * 11 10 9 39 39 H 1.09001 * 109.52390 * 297.68231 * 12 11 10 40 40 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 41 41 H 1.08994 * 109.50535 * 62.31797 * 21 12 11 42 42 H 1.09002 * 109.50417 * 182.43491 * 21 12 11 43 43 H 1.08996 * 109.46834 * 294.18208 * 22 9 8 44 44 H 1.09002 * 109.46103 * 54.14895 * 22 9 8 45 45 H 1.09000 * 109.92257 * 94.01986 * 23 6 5 46 46 H 1.08999 * 109.91723 * 215.31262 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0687 -0.7710 1.2268 5 6 3.2883 -1.5325 0.6494 6 7 2.8334 -1.9215 -0.7100 7 6 3.9769 -2.2221 -1.5818 8 6 4.8838 -3.2473 -0.8981 9 7 6.0276 -3.5475 -1.7696 10 6 6.7911 -4.6936 -1.2598 11 6 8.0513 -4.8860 -2.1064 12 6 7.6492 -5.1247 -3.5644 13 6 8.8874 -5.2553 -4.4134 14 1 9.8642 -5.1783 -3.9592 15 6 8.7732 -5.4790 -5.7692 16 7 7.5837 -5.5728 -6.3223 17 14 10.3081 -5.6485 -6.8203 18 1 10.7180 -7.0749 -6.8713 19 1 10.0221 -5.1662 -8.1954 20 1 11.4043 -4.8393 -6.2299 21 6 6.8136 -3.9400 -4.0571 22 6 5.5900 -3.7740 -3.1528 23 6 2.0645 -0.7671 -1.2236 24 1 -0.3632 -1.0270 0.0374 25 1 -0.3633 0.5458 0.8707 26 1 -0.3634 0.4811 -0.9081 27 1 2.3810 -0.0801 2.0100 28 1 1.3196 -1.4669 1.6045 29 1 3.5092 -2.4159 1.2485 30 1 4.1581 -0.8783 0.5915 31 1 4.5398 -1.3081 -1.7710 32 1 3.6164 -2.6290 -2.5266 33 1 4.3210 -4.1613 -0.7088 34 1 5.2443 -2.8404 0.0467 35 1 6.1766 -5.5922 -1.3136 36 1 7.0745 -4.5092 -0.2235 37 1 8.6097 -5.7463 -1.7375 38 1 8.6735 -3.9934 -2.0420 39 1 7.0610 -6.0397 -3.6349 40 1 7.5034 -5.7298 -7.2762 41 1 7.4151 -3.0317 -4.0241 42 1 6.4883 -4.1248 -5.0809 43 1 4.9812 -4.6770 -3.1979 44 1 5.0010 -2.9218 -3.4916 45 1 2.7148 -0.1202 -1.8125 46 1 1.2327 -1.1173 -1.8348 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692835994.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:50 Heat of formation + Delta-G solvation = -6.267151 kcal Electronic energy + Delta-G solvation = -20882.101990 eV Core-core repulsion = 17998.678303 eV Total energy + Delta-G solvation = -2883.423687 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.46735 -38.09876 -34.66835 -33.15002 -31.30406 -29.96012 -29.66243 -28.10754 -25.80355 -24.71142 -23.15362 -21.95555 -21.45348 -20.21446 -19.92088 -18.55724 -16.44580 -16.19270 -15.91411 -14.98673 -14.68597 -14.37901 -14.21856 -13.80980 -13.58555 -13.44041 -13.11936 -12.74571 -12.64704 -12.31480 -12.16422 -12.03045 -11.74168 -11.39791 -11.23159 -11.04189 -10.92570 -10.84979 -10.74720 -10.68784 -10.61572 -10.34045 -10.16568 -9.93022 -9.37704 -8.91824 -8.64432 -8.46301 -8.25711 -7.69551 -5.93900 -3.99057 3.33245 3.39906 3.43589 3.85364 4.37328 4.47781 4.52319 4.58983 4.73319 5.11023 5.16379 5.21411 5.28637 5.31835 5.36248 5.40166 5.53033 5.66331 5.70895 5.74590 5.78080 5.83046 5.87055 5.90262 5.92443 6.03174 6.07828 6.13057 6.20534 6.29387 6.36229 6.65007 6.67302 6.82743 6.89853 6.97392 7.12271 7.21582 7.48705 7.66179 7.74029 7.87444 8.09161 8.19976 8.52215 9.04622 9.65024 11.12241 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.042451 B = 0.003405 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.420756 B = 8221.477116 C = 8665.852530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.104 4.104 3 H 0.072 0.928 4 C -0.120 4.120 5 C 0.032 3.968 6 N -0.517 5.517 7 C 0.044 3.956 8 C 0.057 3.943 9 N -0.536 5.536 10 C 0.062 3.938 11 C -0.106 4.106 12 C 0.047 3.953 13 C -0.509 4.509 14 H 0.054 0.946 15 C 0.060 3.940 16 N -0.892 5.892 17 Si 0.890 3.110 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.275 1.275 21 C -0.104 4.104 22 C 0.052 3.948 23 C 0.039 3.961 24 H 0.059 0.941 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.046 0.954 31 H 0.044 0.956 32 H 0.082 0.918 33 H 0.034 0.966 34 H 0.066 0.934 35 H 0.024 0.976 36 H 0.056 0.944 37 H 0.049 0.951 38 H 0.056 0.944 39 H 0.020 0.980 40 H 0.259 0.741 41 H 0.042 0.958 42 H 0.092 0.908 43 H 0.022 0.978 44 H 0.059 0.941 45 H 0.044 0.956 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.067 9.673 12.852 20.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.123 4.123 3 H 0.090 0.910 4 C -0.158 4.158 5 C -0.095 4.095 6 N -0.242 5.242 7 C -0.084 4.084 8 C -0.071 4.071 9 N -0.261 5.261 10 C -0.066 4.066 11 C -0.144 4.144 12 C 0.029 3.971 13 C -0.548 4.548 14 H 0.072 0.928 15 C -0.141 4.141 16 N -0.531 5.531 17 Si 0.718 3.282 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.142 4.142 22 C -0.076 4.076 23 C -0.089 4.089 24 H 0.078 0.922 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.093 0.907 29 H 0.100 0.900 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.100 0.900 33 H 0.053 0.947 34 H 0.085 0.915 35 H 0.042 0.958 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.038 0.962 40 H 0.069 0.931 41 H 0.061 0.939 42 H 0.110 0.890 43 H 0.041 0.959 44 H 0.077 0.923 45 H 0.063 0.937 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.149 9.571 12.669 19.993 hybrid contribution 0.802 -0.089 -0.738 1.094 sum -11.347 9.482 11.931 19.000 Atomic orbital electron populations 1.21818 0.94424 1.02120 1.01440 1.21997 0.96392 0.99006 0.94932 0.90951 1.22586 0.97678 0.98686 0.96852 1.23246 0.96386 0.99030 0.90880 1.64821 1.21203 1.35826 1.02352 1.22487 0.90484 0.98714 0.96715 1.22077 0.91141 0.97475 0.96429 1.62081 1.21478 1.39907 1.02676 1.22098 0.96140 0.90434 0.97899 1.21672 0.94754 1.00148 0.97809 1.18683 0.95162 0.93954 0.89311 1.21219 0.92577 1.48376 0.92602 0.92786 1.24974 0.95749 0.95321 0.98035 1.69882 1.21863 1.50026 1.11367 0.86635 0.83653 0.78205 0.79731 1.20825 1.21315 1.19980 1.21664 0.93883 0.99042 0.99633 1.22377 0.98995 0.98190 0.87998 1.22974 0.98120 0.91166 0.96662 0.92170 0.92801 0.92697 0.91327 0.90708 0.90031 0.93548 0.93801 0.89967 0.94740 0.91518 0.95762 0.92585 0.93209 0.92533 0.96181 0.93139 0.93936 0.88987 0.95925 0.92259 0.93719 0.90278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 8.90 37.16 0.33 -0.72 16 2 C -0.10 -0.91 3.58 -89.27 -0.32 -1.23 16 3 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 4 C -0.12 -1.05 6.61 -24.87 -0.16 -1.21 16 5 C 0.03 0.34 5.10 -1.89 -0.01 0.34 16 6 N -0.52 -6.40 5.40 -230.45 -1.24 -7.64 16 7 C 0.04 0.62 4.28 -3.82 -0.02 0.60 16 8 C 0.06 0.87 4.93 -3.82 -0.02 0.85 16 9 N -0.54 -9.83 4.81 -234.67 -1.13 -10.96 16 10 C 0.06 1.16 5.42 -3.84 -0.02 1.14 16 11 C -0.11 -2.28 5.32 -26.65 -0.14 -2.42 16 12 C 0.05 1.20 2.16 -91.65 -0.20 1.00 16 13 C -0.51 -14.18 8.56 -34.44 -0.29 -14.48 16 14 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 15 C 0.06 1.67 5.31 -17.82 -0.09 1.58 16 16 N -0.89 -25.67 11.37 55.43 0.63 -25.04 16 17 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 21 C -0.10 -2.50 5.13 -26.65 -0.14 -2.63 16 22 C 0.05 1.03 4.85 -3.83 -0.02 1.02 16 23 C 0.04 0.41 6.36 -2.76 -0.02 0.40 16 24 H 0.06 0.48 8.11 -51.93 -0.42 0.06 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.65 7.85 -51.93 -0.41 0.24 16 29 H 0.08 0.86 7.66 -51.93 -0.40 0.46 16 30 H 0.05 0.51 8.00 -51.93 -0.42 0.09 16 31 H 0.04 0.64 7.81 -51.93 -0.41 0.23 16 32 H 0.08 1.24 6.21 -51.93 -0.32 0.91 16 33 H 0.03 0.54 8.08 -51.93 -0.42 0.13 16 34 H 0.07 0.94 6.79 -51.93 -0.35 0.59 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.92 8.12 -51.93 -0.42 0.50 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.26 7.11 8.31 -40.82 -0.34 6.78 16 41 H 0.04 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.09 2.45 6.17 -51.93 -0.32 2.13 16 43 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.06 1.09 5.81 -51.93 -0.30 0.79 16 45 H 0.04 0.49 7.57 -51.93 -0.39 0.09 16 46 H 0.08 0.83 7.68 -51.93 -0.40 0.43 16 LS Contribution 342.29 15.07 5.16 5.16 Total: -1.00 -28.40 342.29 -11.47 -39.87 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -8.75 Total: -2.11 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: -1.12 Total: -15.78 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: -1.74 Total: -43.64 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -28.40 -11.47 -39.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692835994.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.607 kcal (2) G-P(sol) polarization free energy of solvation -28.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds