Wall clock time and date at job start Mon Mar 30 2020 04:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 110.27282 * 2 1 4 4 C 1.54587 * 110.39364 * 122.14602 * 2 1 3 5 5 C 1.54943 * 102.92246 * 140.91766 * 4 2 1 6 6 N 1.48533 * 103.22361 * 322.58584 * 5 4 2 7 7 C 1.46903 * 110.99798 * 159.71489 * 6 5 4 8 8 C 1.53005 * 109.46954 * 52.60824 * 7 6 5 9 9 N 1.46894 * 109.47096 * 180.02562 * 8 7 6 10 10 C 1.46847 * 110.99976 * 189.99779 * 9 8 7 11 11 C 1.53033 * 109.52573 * 185.83829 * 10 9 8 12 12 C 1.53119 * 109.27673 * 300.81824 * 11 10 9 13 13 C 1.50702 * 109.52248 * 177.55790 * 12 11 10 14 14 H 1.08002 * 120.00299 * 0.13319 * 13 12 11 15 15 C 1.37884 * 119.99942 * 179.84877 * 13 12 11 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48501 * 109.47188 * 90.00793 * 17 15 13 19 19 H 1.48501 * 109.47085 * 210.00372 * 17 15 13 20 20 H 1.48498 * 109.47634 * 330.00608 * 17 15 13 21 21 C 1.53118 * 109.21117 * 57.62443 * 12 11 10 22 22 C 1.46841 * 110.99985 * 314.20278 * 9 8 7 23 23 C 1.47901 * 105.82045 * 39.20800 * 6 5 4 24 24 H 1.09002 * 109.46453 * 182.08762 * 1 2 3 25 25 H 1.08993 * 109.47257 * 302.08285 * 1 2 3 26 26 H 1.08999 * 109.47404 * 62.08738 * 1 2 3 27 27 H 1.08998 * 110.72862 * 259.27223 * 4 2 1 28 28 H 1.09001 * 110.72920 * 22.38789 * 4 2 1 29 29 H 1.08997 * 110.67109 * 204.15353 * 5 4 2 30 30 H 1.09001 * 110.66432 * 81.02175 * 5 4 2 31 31 H 1.08997 * 109.47456 * 292.61071 * 7 6 5 32 32 H 1.08998 * 109.47374 * 172.60315 * 7 6 5 33 33 H 1.08995 * 109.47274 * 59.99238 * 8 7 6 34 34 H 1.09005 * 109.46909 * 299.99624 * 8 7 6 35 35 H 1.09003 * 109.46420 * 65.81624 * 10 9 8 36 36 H 1.09003 * 109.46395 * 305.85278 * 10 9 8 37 37 H 1.09001 * 109.50499 * 180.88280 * 11 10 9 38 38 H 1.08993 * 109.53685 * 60.78110 * 11 10 9 39 39 H 1.09001 * 109.52390 * 297.68231 * 12 11 10 40 40 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 41 41 H 1.08994 * 109.50535 * 62.31797 * 21 12 11 42 42 H 1.09002 * 109.50417 * 182.43491 * 21 12 11 43 43 H 1.08996 * 109.46834 * 294.18208 * 22 9 8 44 44 H 1.09002 * 109.46103 * 54.14895 * 22 9 8 45 45 H 1.09000 * 109.92257 * 94.01986 * 23 6 5 46 46 H 1.08999 * 109.91723 * 215.31262 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0687 -0.7710 1.2268 5 6 3.2883 -1.5325 0.6494 6 7 2.8334 -1.9215 -0.7100 7 6 3.9769 -2.2221 -1.5818 8 6 4.8838 -3.2473 -0.8981 9 7 6.0276 -3.5475 -1.7696 10 6 6.7911 -4.6936 -1.2598 11 6 8.0513 -4.8860 -2.1064 12 6 7.6492 -5.1247 -3.5644 13 6 8.8874 -5.2553 -4.4134 14 1 9.8642 -5.1783 -3.9592 15 6 8.7732 -5.4790 -5.7692 16 7 7.5837 -5.5728 -6.3223 17 14 10.3081 -5.6485 -6.8203 18 1 10.7180 -7.0749 -6.8713 19 1 10.0221 -5.1662 -8.1954 20 1 11.4043 -4.8393 -6.2299 21 6 6.8136 -3.9400 -4.0571 22 6 5.5900 -3.7740 -3.1528 23 6 2.0645 -0.7671 -1.2236 24 1 -0.3632 -1.0270 0.0374 25 1 -0.3633 0.5458 0.8707 26 1 -0.3634 0.4811 -0.9081 27 1 2.3810 -0.0801 2.0100 28 1 1.3196 -1.4669 1.6045 29 1 3.5092 -2.4159 1.2485 30 1 4.1581 -0.8783 0.5915 31 1 4.5398 -1.3081 -1.7710 32 1 3.6164 -2.6290 -2.5266 33 1 4.3210 -4.1613 -0.7088 34 1 5.2443 -2.8404 0.0467 35 1 6.1766 -5.5922 -1.3136 36 1 7.0745 -4.5092 -0.2235 37 1 8.6097 -5.7463 -1.7375 38 1 8.6735 -3.9934 -2.0420 39 1 7.0610 -6.0397 -3.6349 40 1 7.5034 -5.7298 -7.2762 41 1 7.4151 -3.0317 -4.0241 42 1 6.4883 -4.1248 -5.0809 43 1 4.9812 -4.6770 -3.1979 44 1 5.0010 -2.9218 -3.4916 45 1 2.7148 -0.1202 -1.8125 46 1 1.2327 -1.1173 -1.8348 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692835994.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:49 Heat of formation + Delta-G solvation = -23.795606 kcal Electronic energy + Delta-G solvation = -20882.862081 eV Core-core repulsion = 17998.678303 eV Total energy + Delta-G solvation = -2884.183778 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.50828 -39.51694 -36.19262 -34.55847 -32.97732 -31.55271 -30.61537 -29.41501 -27.34489 -25.80996 -24.64032 -23.56309 -22.78667 -21.17632 -20.89224 -20.35601 -18.45339 -17.36854 -16.91341 -16.54927 -16.10987 -15.81702 -15.53486 -14.94272 -14.81568 -14.62115 -14.43913 -14.10912 -14.06021 -13.89956 -13.36164 -13.09041 -13.01026 -12.83451 -12.61868 -12.50363 -12.39361 -12.13961 -11.97159 -11.95046 -11.85245 -11.62497 -11.58511 -11.43997 -11.30901 -10.80458 -10.61076 -10.37101 -9.41921 -9.19776 -8.07706 -6.21191 1.40912 1.41596 1.52077 2.43891 2.77207 3.18694 3.31980 3.62234 3.76657 3.95780 3.99316 4.13190 4.22058 4.31955 4.37867 4.40916 4.51166 4.55056 4.56578 4.63723 4.65966 4.73818 4.82476 4.86267 4.89019 4.94515 4.96326 5.00715 5.03908 5.11052 5.16246 5.21942 5.23561 5.27256 5.33398 5.45327 5.55674 5.62285 5.93847 5.95868 6.00793 6.05006 6.28879 6.32612 6.40869 6.90361 7.46439 8.96906 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.042451 B = 0.003405 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.420756 B = 8221.477116 C = 8665.852530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.101 4.101 3 H 0.080 0.920 4 C -0.115 4.115 5 C 0.028 3.972 6 N -0.527 5.527 7 C 0.052 3.948 8 C 0.064 3.936 9 N -0.541 5.541 10 C 0.067 3.933 11 C -0.099 4.099 12 C 0.043 3.957 13 C -0.533 4.533 14 H 0.051 0.949 15 C 0.011 3.989 16 N -0.918 5.918 17 Si 0.954 3.046 18 H -0.276 1.276 19 H -0.283 1.283 20 H -0.269 1.269 21 C -0.095 4.095 22 C 0.066 3.934 23 C 0.035 3.965 24 H 0.052 0.948 25 H 0.066 0.934 26 H 0.057 0.943 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.045 0.955 31 H 0.038 0.962 32 H 0.068 0.932 33 H 0.032 0.968 34 H 0.085 0.915 35 H 0.020 0.980 36 H 0.088 0.912 37 H 0.054 0.946 38 H 0.052 0.948 39 H -0.013 1.013 40 H 0.260 0.740 41 H 0.030 0.970 42 H 0.061 0.939 43 H 0.011 0.989 44 H 0.076 0.924 45 H 0.040 0.960 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.298 10.727 14.420 21.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.120 4.120 3 H 0.098 0.902 4 C -0.152 4.152 5 C -0.099 4.099 6 N -0.252 5.252 7 C -0.076 4.076 8 C -0.064 4.064 9 N -0.266 5.266 10 C -0.061 4.061 11 C -0.137 4.137 12 C 0.025 3.975 13 C -0.571 4.571 14 H 0.069 0.931 15 C -0.188 4.188 16 N -0.558 5.558 17 Si 0.780 3.220 18 H -0.202 1.202 19 H -0.209 1.209 20 H -0.193 1.193 21 C -0.133 4.133 22 C -0.062 4.062 23 C -0.093 4.093 24 H 0.072 0.928 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.104 0.896 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.086 0.914 33 H 0.050 0.950 34 H 0.103 0.897 35 H 0.038 0.962 36 H 0.106 0.894 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.005 0.995 40 H 0.069 0.931 41 H 0.049 0.951 42 H 0.079 0.921 43 H 0.029 0.971 44 H 0.094 0.906 45 H 0.058 0.942 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.387 10.629 14.258 21.673 hybrid contribution 0.853 -0.421 -1.215 1.543 sum -11.534 10.208 13.043 20.183 Atomic orbital electron populations 1.21786 0.93473 1.01950 1.02248 1.22006 0.97154 0.99032 0.93845 0.90157 1.22581 0.96769 0.98780 0.97116 1.23323 0.97253 0.99374 0.89948 1.64814 1.20453 1.37015 1.02942 1.22300 0.90820 0.97994 0.96477 1.22090 0.90155 0.97699 0.96425 1.62039 1.22935 1.39580 1.02096 1.22044 0.94668 0.90514 0.98838 1.21538 0.96286 1.00106 0.95753 1.18667 0.94170 0.92879 0.91831 1.21589 0.93324 1.48701 0.93481 0.93054 1.25764 0.98714 0.94985 0.99303 1.70024 1.23732 1.50411 1.11605 0.85616 0.80080 0.78349 0.77967 1.20195 1.20871 1.19331 1.21428 0.95132 0.97807 0.98960 1.22123 0.96899 0.98409 0.88781 1.23047 0.97790 0.90810 0.97648 0.92848 0.91541 0.92349 0.89622 0.90572 0.89854 0.93712 0.94349 0.91368 0.94972 0.89677 0.96172 0.89359 0.92694 0.92941 0.99533 0.93105 0.95087 0.92078 0.97073 0.90573 0.94184 0.90480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 8.90 71.98 0.64 -1.12 16 2 C -0.10 -1.54 3.58 -9.92 -0.04 -1.58 16 3 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 4 C -0.11 -1.70 6.61 31.80 0.21 -1.49 16 5 C 0.03 0.54 5.10 86.65 0.44 0.99 16 6 N -0.53 -12.28 5.40 -883.00 -4.77 -17.04 16 7 C 0.05 1.42 4.28 86.30 0.37 1.79 16 8 C 0.06 1.83 4.93 86.31 0.43 2.26 16 9 N -0.54 -19.24 4.81 -896.37 -4.31 -23.55 16 10 C 0.07 2.40 5.42 86.32 0.47 2.87 16 11 C -0.10 -4.23 5.32 30.64 0.16 -4.07 16 12 C 0.04 2.24 2.16 -11.46 -0.02 2.21 16 13 C -0.53 -30.26 8.56 25.60 0.22 -30.04 16 14 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 15 C 0.01 0.60 5.31 84.66 0.45 1.05 16 16 N -0.92 -54.16 11.37 21.45 0.24 -53.91 16 17 Si 0.95 44.51 29.54 68.60 2.03 46.54 16 18 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 19 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 20 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 21 C -0.09 -4.69 5.13 30.65 0.16 -4.53 16 22 C 0.07 2.65 4.85 86.33 0.42 3.06 16 23 C 0.03 0.70 6.36 86.45 0.55 1.25 16 24 H 0.05 0.76 8.11 -2.39 -0.02 0.74 16 25 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.08 1.13 7.85 -2.39 -0.02 1.11 16 29 H 0.08 1.56 7.66 -2.39 -0.02 1.54 16 30 H 0.04 0.88 8.00 -2.39 -0.02 0.86 16 31 H 0.04 1.08 7.81 -2.39 -0.02 1.06 16 32 H 0.07 2.02 6.21 -2.39 -0.01 2.00 16 33 H 0.03 0.96 8.08 -2.39 -0.02 0.94 16 34 H 0.08 2.16 6.79 -2.38 -0.02 2.15 16 35 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.09 2.63 8.12 -2.39 -0.02 2.61 16 37 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 39 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 40 H 0.26 14.57 8.31 -92.70 -0.77 13.80 16 41 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.06 3.38 6.17 -2.39 -0.01 3.37 16 43 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 44 H 0.08 2.80 5.81 -2.39 -0.01 2.79 16 45 H 0.04 0.83 7.57 -2.39 -0.02 0.81 16 46 H 0.08 1.55 7.68 -2.39 -0.02 1.53 16 Total: -1.00 -61.43 342.29 -1.45 -62.88 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: 0.90 Total: 12.42 kcal Atomic # 6 Polarization: -31.79 SS G_CDS: 4.45 Total: -27.34 kcal Atomic # 7 Polarization: -85.67 SS G_CDS: -8.83 Total: -94.50 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -61.43 -1.45 -62.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692835994.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.079 kcal (2) G-P(sol) polarization free energy of solvation -61.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds