Wall clock time and date at job start Mon Mar 30 2020 04:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.50388 * 2 1 4 4 C 1.53044 * 109.50168 * 120.07208 * 2 1 3 5 5 N 1.46847 * 109.51387 * 60.81020 * 4 2 1 6 6 C 1.46896 * 111.00269 * 185.83458 * 5 4 2 7 7 C 1.52994 * 109.47303 * 161.74904 * 6 5 4 8 8 C 1.50700 * 115.55187 * 147.95214 * 7 6 5 9 9 H 1.07997 * 119.99907 * 113.91993 * 8 7 6 10 10 C 1.37878 * 119.99579 * 293.92606 * 8 7 6 11 11 N 1.31508 * 120.00094 * 352.27291 * 10 8 7 12 12 Si 1.86805 * 119.99761 * 172.27315 * 10 8 7 13 13 H 1.48498 * 109.47187 * 89.99703 * 12 10 8 14 14 H 1.48497 * 109.46930 * 209.99719 * 12 10 8 15 15 H 1.48497 * 109.47146 * 329.99812 * 12 10 8 16 16 C 1.53001 * 117.49937 * 2.23899 * 7 6 5 17 17 C 1.53002 * 60.00312 * 252.51402 * 16 7 6 18 18 C 1.46823 * 111.20683 * 61.74492 * 5 4 2 19 19 C 1.53036 * 109.52383 * 298.25025 * 18 5 4 20 20 C 1.53116 * 109.54071 * 239.89802 * 2 1 3 21 21 H 1.08999 * 109.52183 * 177.72802 * 20 2 1 22 22 N 1.46901 * 109.52340 * 57.59616 * 20 2 1 23 23 C 1.46901 * 110.99801 * 61.01953 * 22 20 2 24 24 C 1.46894 * 110.99860 * 184.96980 * 22 20 2 25 25 H 1.08995 * 109.47436 * 301.17041 * 1 2 3 26 26 H 1.08997 * 109.46561 * 61.17176 * 1 2 3 27 27 H 1.09000 * 109.46707 * 181.16087 * 1 2 3 28 28 H 1.08996 * 109.46301 * 180.81950 * 4 2 1 29 29 H 1.09004 * 109.46096 * 300.79930 * 4 2 1 30 30 H 1.09003 * 109.46870 * 281.75056 * 6 5 4 31 31 H 1.09005 * 109.46946 * 41.74357 * 6 5 4 32 32 H 0.97004 * 119.99700 * 185.04569 * 11 10 8 33 33 H 1.09001 * 117.49653 * 0.02562 * 16 7 6 34 34 H 1.09002 * 117.49810 * 145.02372 * 16 7 6 35 35 H 1.09005 * 117.49725 * 252.51377 * 17 16 7 36 36 H 1.08997 * 117.50048 * 107.48666 * 17 16 7 37 37 H 1.09005 * 109.46349 * 178.23644 * 18 5 4 38 38 H 1.09004 * 109.45831 * 58.26458 * 18 5 4 39 39 H 1.09003 * 109.50219 * 299.24356 * 19 18 5 40 40 H 1.08993 * 109.50779 * 179.11970 * 19 18 5 41 41 H 1.08999 * 109.47002 * 59.99535 * 23 22 20 42 42 H 1.08996 * 109.47558 * 179.97438 * 23 22 20 43 43 H 1.09010 * 109.47141 * 300.00321 * 23 22 20 44 44 H 1.09006 * 109.47167 * 68.03911 * 24 22 20 45 45 H 1.09005 * 109.47068 * 188.03293 * 24 22 20 46 46 H 1.08997 * 109.47336 * 308.03633 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0409 -0.7229 1.2485 5 7 1.5683 -2.1132 1.2381 6 6 1.9230 -2.7991 2.4878 7 6 1.0556 -4.0493 2.6472 8 6 1.7079 -5.2065 3.3588 9 1 1.3351 -5.5290 4.3197 10 6 2.7808 -5.8535 2.7831 11 7 3.1394 -5.5640 1.5514 12 14 3.7248 -7.1413 3.7526 13 1 3.1159 -8.4765 3.5258 14 1 5.1401 -7.1599 3.3035 15 1 3.6689 -6.8111 5.1994 16 6 0.0724 -4.3753 1.5212 17 6 -0.4458 -3.8450 2.8596 18 6 2.0862 -2.8415 0.0732 19 6 1.5767 -2.1820 -1.2103 20 6 2.0421 -0.7237 -1.2484 21 1 3.1314 -0.6884 -1.2687 22 7 1.5071 -0.0689 -2.4496 23 6 1.9484 1.3301 -2.5273 24 6 1.8822 -0.8073 -3.6629 25 1 -0.3634 0.5319 0.8792 26 1 -0.3632 0.4955 -0.9003 27 1 -0.3633 -1.0275 0.0208 28 1 3.1308 -0.7098 1.2552 29 1 1.6661 -0.2185 2.1391 30 1 2.9738 -3.0872 2.4585 31 1 1.7533 -2.1292 3.3307 32 1 3.8465 -6.0694 1.1207 33 1 0.0438 -3.6993 0.6667 34 1 -0.1027 -5.4271 1.2948 35 1 -0.9618 -4.5480 3.5137 36 1 -0.8155 -2.8200 2.8857 37 1 1.7445 -3.8760 0.1103 38 1 3.1760 -2.8184 0.0856 39 1 0.4874 -2.2169 -1.2297 40 1 1.9740 -2.7134 -2.0750 41 1 3.0371 1.3661 -2.5650 42 1 1.5385 1.7911 -3.4259 43 1 1.5973 1.8712 -1.6484 44 1 1.3670 -1.7678 -3.6775 45 1 1.5981 -0.2293 -4.5423 46 1 2.9595 -0.9726 -3.6692 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693632602.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:02 Heat of formation + Delta-G solvation = 39.467623 kcal Electronic energy + Delta-G solvation = -22266.744459 eV Core-core repulsion = 19385.303981 eV Total energy + Delta-G solvation = -2881.440478 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.57497 -37.20603 -35.23936 -32.18246 -31.81775 -30.96049 -27.47612 -26.40051 -26.31844 -25.20228 -23.28099 -21.97654 -21.00306 -20.66783 -18.70232 -18.12974 -16.11370 -15.87618 -15.17235 -14.74378 -14.63719 -14.53787 -14.19859 -13.91294 -13.23941 -13.01574 -12.77224 -12.49849 -12.39517 -12.22462 -11.74666 -11.56466 -11.39132 -11.30512 -11.01143 -10.96599 -10.83531 -10.77217 -10.54340 -10.45842 -10.26488 -9.91557 -9.86746 -9.64649 -9.04161 -8.83502 -8.37248 -8.21821 -7.85016 -7.31026 -6.00262 -4.03669 3.29117 3.36589 3.40537 4.03470 4.41156 4.77239 4.98247 5.14294 5.20520 5.30103 5.39308 5.44748 5.53121 5.58537 5.63080 5.72629 5.79393 5.85812 5.92265 5.96100 6.08488 6.13620 6.20346 6.28573 6.35420 6.44030 6.52461 6.54987 6.57184 6.72662 6.80310 6.93135 6.95978 6.98964 7.12939 7.16634 7.20454 7.34252 7.39088 7.62705 7.71253 7.90206 8.06169 8.16077 8.59650 8.96992 9.59102 11.06422 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.027878 B = 0.005527 C = 0.005131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.153031 B = 5064.873750 C = 5456.130878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.076 4.076 3 H 0.059 0.941 4 C 0.059 3.941 5 N -0.528 5.528 6 C 0.103 3.897 7 C 0.050 3.950 8 C -0.493 4.493 9 H 0.057 0.943 10 C 0.072 3.928 11 N -0.876 5.876 12 Si 0.886 3.114 13 H -0.282 1.282 14 H -0.288 1.288 15 H -0.274 1.274 16 C -0.169 4.169 17 C -0.205 4.205 18 C 0.061 3.939 19 C -0.111 4.111 20 C 0.090 3.910 21 H 0.031 0.969 22 N -0.538 5.538 23 C 0.022 3.978 24 C 0.024 3.976 25 H 0.038 0.962 26 H 0.052 0.948 27 H 0.071 0.929 28 H 0.019 0.981 29 H 0.067 0.933 30 H 0.045 0.955 31 H 0.044 0.956 32 H 0.258 0.742 33 H 0.086 0.914 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.117 0.883 38 H 0.021 0.979 39 H 0.077 0.923 40 H 0.056 0.944 41 H 0.019 0.981 42 H 0.062 0.938 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.061 0.939 46 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.442 11.093 -7.634 13.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.096 4.096 3 H 0.077 0.923 4 C -0.071 4.071 5 N -0.253 5.253 6 C -0.024 4.024 7 C 0.049 3.951 8 C -0.531 4.531 9 H 0.075 0.925 10 C -0.130 4.130 11 N -0.513 5.513 12 Si 0.714 3.286 13 H -0.208 1.208 14 H -0.213 1.213 15 H -0.199 1.199 16 C -0.207 4.207 17 C -0.242 4.242 18 C -0.067 4.067 19 C -0.150 4.150 20 C -0.018 4.018 21 H 0.049 0.951 22 N -0.262 5.262 23 C -0.126 4.126 24 C -0.125 4.125 25 H 0.057 0.943 26 H 0.071 0.929 27 H 0.090 0.910 28 H 0.037 0.963 29 H 0.085 0.915 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.104 0.896 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.135 0.865 38 H 0.039 0.961 39 H 0.095 0.905 40 H 0.074 0.926 41 H 0.038 0.962 42 H 0.081 0.919 43 H 0.089 0.911 44 H 0.091 0.909 45 H 0.080 0.920 46 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -2.264 11.102 -7.760 13.733 hybrid contribution 2.489 -0.716 0.409 2.622 sum 0.225 10.386 -7.351 12.726 Atomic orbital electron populations 1.21596 0.93803 1.03064 0.99883 1.21160 0.97767 0.97316 0.93309 0.92259 1.22067 0.96405 0.91429 0.97150 1.61991 1.59243 1.00286 1.03742 1.21598 0.98994 0.93857 0.87985 1.18813 0.85469 0.93175 0.97671 1.20551 1.13664 1.14157 1.04767 0.92485 1.24929 0.96631 0.96581 0.94898 1.69939 1.30020 1.39835 1.11470 0.86689 0.79323 0.81939 0.80639 1.20797 1.21343 1.19917 1.22828 1.07295 0.98746 0.91809 1.22802 1.00696 0.99043 1.01631 1.22212 0.96424 1.00374 0.87689 1.21794 1.02289 0.92852 0.98022 1.21774 0.95561 0.95170 0.89255 0.95100 1.62052 1.59733 1.01983 1.02417 1.22406 0.97630 0.90205 1.02349 1.22393 0.98427 0.99477 0.92169 0.94262 0.92852 0.90986 0.96276 0.91473 0.93693 0.93772 0.93222 0.89620 0.91714 0.91636 0.91492 0.86483 0.96117 0.90476 0.92567 0.96236 0.91886 0.91122 0.90898 0.92042 0.95960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.83 8.58 37.16 0.32 -1.51 16 2 C -0.08 -1.11 2.33 -90.54 -0.21 -1.32 16 3 H 0.06 0.79 6.57 -51.93 -0.34 0.44 16 4 C 0.06 0.98 4.87 -3.83 -0.02 0.96 16 5 N -0.53 -10.24 2.92 -234.69 -0.69 -10.92 16 6 C 0.10 2.31 4.97 -3.83 -0.02 2.30 16 7 C 0.05 1.21 1.64 -155.66 -0.26 0.95 16 8 C -0.49 -13.29 8.79 -34.44 -0.30 -13.60 16 9 H 0.06 1.56 7.83 -52.49 -0.41 1.14 16 10 C 0.07 1.93 5.19 -17.82 -0.09 1.84 16 11 N -0.88 -23.53 12.26 55.43 0.68 -22.85 16 12 Si 0.89 20.81 29.55 -169.99 -5.02 15.79 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 14 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 16 C -0.17 -3.92 8.03 -26.73 -0.21 -4.14 16 17 C -0.20 -4.57 9.94 -26.73 -0.27 -4.84 16 18 C 0.06 1.21 4.26 -3.85 -0.02 1.19 16 19 C -0.11 -1.83 4.56 -26.65 -0.12 -1.95 16 20 C 0.09 1.33 1.68 -67.59 -0.11 1.22 16 21 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 22 N -0.54 -6.96 4.01 -243.03 -0.97 -7.94 16 23 C 0.02 0.25 9.22 60.07 0.55 0.80 16 24 C 0.02 0.27 8.90 60.06 0.53 0.81 16 25 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.74 7.51 -51.93 -0.39 0.35 16 27 H 0.07 1.19 6.04 -51.93 -0.31 0.88 16 28 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 1.08 7.94 -51.93 -0.41 0.67 16 30 H 0.04 1.13 7.31 -51.93 -0.38 0.75 16 31 H 0.04 0.95 7.83 -51.93 -0.41 0.54 16 32 H 0.26 6.73 8.32 -40.82 -0.34 6.39 16 33 H 0.09 1.90 5.51 -51.93 -0.29 1.62 16 34 H 0.06 1.60 8.14 -51.93 -0.42 1.18 16 35 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 36 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 37 H 0.12 2.68 4.99 -51.93 -0.26 2.42 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.08 1.31 6.61 -51.93 -0.34 0.97 16 40 H 0.06 0.88 6.68 -51.93 -0.35 0.53 16 41 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 42 H 0.06 0.60 8.03 -51.93 -0.42 0.18 16 43 H 0.07 0.76 6.39 -51.92 -0.33 0.43 16 44 H 0.07 0.86 6.78 -51.93 -0.35 0.51 16 45 H 0.06 0.61 7.98 -51.93 -0.41 0.19 16 46 H 0.02 0.26 8.10 -51.93 -0.42 -0.16 16 LS Contribution 338.58 15.07 5.10 5.10 Total: -1.00 -26.25 338.58 -9.47 -35.72 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -8.34 Total: 2.38 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: -0.22 Total: -17.29 kcal Atomic # 7 Polarization: -40.72 SS G_CDS: -0.98 Total: -41.70 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -26.25 -9.47 -35.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693632602.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.190 kcal (2) G-P(sol) polarization free energy of solvation -26.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds