Wall clock time and date at job start Mon Mar 30 2020 05:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46902 * 109.47296 * 2 1 4 4 C 1.46908 * 110.99569 * 299.12522 * 3 2 1 5 5 C 1.50699 * 109.47165 * 76.00381 * 4 3 2 6 6 H 1.07999 * 120.00131 * 4.19514 * 5 4 3 7 7 C 1.37880 * 119.99628 * 184.20339 * 5 4 3 8 8 N 1.31511 * 120.00272 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99651 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47163 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.46823 * 119.99766 * 9 7 5 12 12 H 1.48500 * 109.46710 * 239.99733 * 9 7 5 13 13 C 1.46898 * 111.00195 * 175.16798 * 3 2 1 14 14 H 1.09005 * 112.97310 * 154.42991 * 13 3 2 15 15 C 1.53507 * 113.69715 * 22.91732 * 13 3 2 16 16 H 1.09000 * 112.30018 * 332.18372 * 15 13 3 17 17 C 1.51659 * 114.25392 * 100.98467 * 15 13 3 18 18 C 1.52729 * 111.06811 * 64.48233 * 17 15 13 19 19 C 1.53150 * 108.68491 * 54.59237 * 18 17 15 20 20 N 1.46349 * 109.06418 * 292.69742 * 19 18 17 21 21 C 1.44898 * 113.62117 * 58.13457 * 20 19 18 22 22 H 1.09003 * 110.22715 * 94.02955 * 21 20 19 23 23 C 1.52270 * 113.15841 * 285.53395 * 13 3 2 24 24 C 1.53005 * 114.49952 * 26.39263 * 23 13 3 25 25 C 1.52997 * 113.08403 * 255.11166 * 23 13 3 26 26 H 1.09003 * 109.47124 * 187.40314 * 1 2 3 27 27 H 1.09003 * 109.46982 * 307.40021 * 1 2 3 28 28 H 1.08994 * 109.47438 * 67.39848 * 1 2 3 29 29 H 1.09002 * 109.47540 * 240.00003 * 2 1 3 30 30 H 1.08999 * 109.47596 * 119.99482 * 2 1 3 31 31 H 1.09001 * 109.46530 * 195.99895 * 4 3 2 32 32 H 1.08995 * 109.46892 * 315.99607 * 4 3 2 33 33 H 0.96998 * 120.00222 * 180.02562 * 8 7 5 34 34 H 1.09000 * 109.16234 * 304.07271 * 17 15 13 35 35 H 1.08998 * 109.11886 * 184.86138 * 17 15 13 36 36 H 1.09004 * 109.59945 * 294.83236 * 18 17 15 37 37 H 1.08997 * 109.73960 * 174.42744 * 18 17 15 38 38 H 1.08991 * 109.55244 * 52.59567 * 19 18 17 39 39 H 1.09000 * 109.55545 * 172.79918 * 19 18 17 40 40 H 1.00899 * 111.00276 * 184.89617 * 20 19 18 41 41 H 1.08997 * 109.47415 * 188.86675 * 24 23 13 42 42 H 1.09000 * 109.47219 * 308.87209 * 24 23 13 43 43 H 1.09003 * 109.47095 * 68.86538 * 24 23 13 44 44 H 1.08998 * 109.46916 * 303.91506 * 25 23 13 45 45 H 1.08997 * 109.47172 * 63.91391 * 25 23 13 46 46 H 1.09003 * 109.47078 * 183.91632 * 25 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5658 2.1038 -1.1981 5 6 0.1117 2.4686 -1.0444 6 1 -0.4039 2.2544 -0.1199 7 6 -0.5604 3.0755 -2.0841 8 7 0.0676 3.3366 -3.2097 9 14 -2.3630 3.5271 -1.8937 10 1 -2.8327 3.1298 -0.5422 11 1 -2.5266 4.9931 -2.0641 12 1 -3.1626 2.8166 -2.9239 13 6 3.4835 1.4258 0.1155 14 1 3.9188 2.3301 -0.3100 15 6 4.1748 0.1339 -0.3423 16 1 3.5369 -0.7417 -0.2216 17 6 4.7758 0.2080 -1.7327 18 6 5.9088 1.2307 -1.7874 19 6 6.9318 0.8882 -0.7003 20 7 6.3241 1.1052 0.6133 21 6 5.1222 0.3262 0.8328 22 1 5.3654 -0.6069 1.3411 23 6 3.9827 1.1057 1.5180 24 6 3.0422 0.2220 2.3399 25 6 4.4583 2.3428 2.2824 26 1 -0.3633 -1.0191 0.1324 27 1 -0.3633 0.6242 0.8164 28 1 -0.3634 0.3949 -0.9487 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 2.1567 3.0111 -1.3230 32 1 1.6899 1.4660 -2.0732 33 1 -0.4051 3.7640 -3.9409 34 1 4.0003 0.4950 -2.4429 35 1 5.1656 -0.7726 -2.0059 36 1 5.5087 2.2293 -1.6115 37 1 6.3891 1.1962 -2.7652 38 1 7.2303 -0.1556 -0.7961 39 1 7.8068 1.5292 -0.8077 40 1 6.9979 0.9647 1.3511 41 1 3.3961 0.1740 3.3697 42 1 2.0374 0.6440 2.3203 43 1 3.0230 -0.7817 1.9152 44 1 5.2306 2.8516 1.7056 45 1 3.6175 3.0184 2.4392 46 1 4.8656 2.0396 3.2469 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693695863.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:51 Heat of formation + Delta-G solvation = 40.064229 kcal Electronic energy + Delta-G solvation = -22607.955307 eV Core-core repulsion = 19726.540699 eV Total energy + Delta-G solvation = -2881.414608 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.09101 -36.55198 -34.61551 -32.55239 -31.91910 -29.89804 -29.32915 -27.39106 -26.66010 -24.99591 -23.11238 -22.45421 -22.02384 -19.83129 -19.01676 -17.25256 -16.83450 -16.09457 -15.19992 -14.61443 -14.41446 -14.39285 -14.05180 -13.85770 -13.49145 -13.27843 -12.65885 -12.54665 -12.28933 -12.12026 -11.98067 -11.57658 -11.33032 -11.16042 -11.03654 -10.93117 -10.91437 -10.75885 -10.61490 -10.35344 -10.15191 -10.06579 -9.96234 -9.86577 -9.57196 -9.11080 -8.89963 -8.30895 -8.06401 -7.02441 -5.94148 -3.90633 3.34408 3.42388 3.46963 4.15782 4.48555 4.75811 4.89045 5.02451 5.05865 5.24402 5.28472 5.35977 5.39589 5.56301 5.62818 5.72095 5.79670 5.86451 5.90381 5.97078 6.08726 6.14403 6.16935 6.25151 6.28179 6.33614 6.42586 6.45095 6.46263 6.52776 6.61670 6.67996 6.71762 6.88656 6.97000 7.03121 7.32750 7.35431 7.48302 7.55302 7.56534 7.95110 8.25215 8.36385 8.68913 9.14785 9.68809 11.16146 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.023726 B = 0.006239 C = 0.005660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.873273 B = 4486.777332 C = 4945.566447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.045 3.955 3 N -0.522 5.522 4 C 0.194 3.806 5 C -0.495 4.495 6 H 0.071 0.929 7 C 0.050 3.950 8 N -0.901 5.901 9 Si 0.890 3.110 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.287 1.287 13 C 0.094 3.906 14 H 0.096 0.904 15 C -0.145 4.145 16 H 0.096 0.904 17 C -0.107 4.107 18 C -0.118 4.118 19 C 0.072 3.928 20 N -0.682 5.682 21 C 0.087 3.913 22 H 0.033 0.967 23 C -0.070 4.070 24 C -0.125 4.125 25 C -0.123 4.123 26 H 0.024 0.976 27 H 0.055 0.945 28 H 0.088 0.912 29 H 0.016 0.984 30 H 0.072 0.928 31 H 0.021 0.979 32 H -0.007 1.007 33 H 0.258 0.742 34 H 0.068 0.932 35 H 0.049 0.951 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.022 0.978 39 H 0.070 0.930 40 H 0.344 0.656 41 H 0.042 0.958 42 H 0.081 0.919 43 H 0.051 0.949 44 H 0.069 0.931 45 H 0.052 0.948 46 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.722 -7.160 7.176 15.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.082 4.082 3 N -0.244 5.244 4 C 0.069 3.931 5 C -0.533 4.533 6 H 0.089 0.911 7 C -0.150 4.150 8 N -0.541 5.541 9 Si 0.719 3.281 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.213 1.213 13 C -0.016 4.016 14 H 0.114 0.886 15 C -0.165 4.165 16 H 0.114 0.886 17 C -0.145 4.145 18 C -0.155 4.155 19 C -0.057 4.057 20 N -0.314 5.314 21 C -0.024 4.024 22 H 0.051 0.949 23 C -0.072 4.072 24 C -0.182 4.182 25 C -0.180 4.180 26 H 0.043 0.957 27 H 0.074 0.926 28 H 0.107 0.893 29 H 0.034 0.966 30 H 0.090 0.910 31 H 0.039 0.961 32 H 0.011 0.989 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.067 0.933 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.041 0.959 39 H 0.089 0.911 40 H 0.163 0.837 41 H 0.061 0.939 42 H 0.100 0.900 43 H 0.069 0.931 44 H 0.088 0.912 45 H 0.071 0.929 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 11.112 -6.327 7.179 14.665 hybrid contribution -0.210 -1.006 -0.706 1.247 sum 10.902 -7.334 6.473 14.647 Atomic orbital electron populations 1.22132 0.95218 0.98119 1.05017 1.22434 0.96358 0.90416 0.99021 1.62117 1.06596 1.12948 1.42752 1.19730 0.95887 0.92473 0.84991 1.21440 0.95192 1.36912 0.99802 0.91100 1.24986 0.98172 0.96384 0.95463 1.69970 1.36300 1.43516 1.04354 0.86550 0.85472 0.78061 0.78034 1.19649 1.21202 1.21312 1.22929 0.88525 0.95950 0.94183 0.88562 1.22864 0.98096 1.02149 0.93425 0.88594 1.21011 0.98137 0.98326 0.97013 1.21545 0.96050 1.00530 0.97423 1.21681 0.96533 0.98273 0.89185 1.58059 1.07751 1.61656 1.03904 1.21760 0.89691 0.93517 0.97402 0.94873 1.21792 0.94084 0.95827 0.95497 1.21770 1.00799 0.98079 0.97570 1.21531 1.01025 0.97022 0.98448 0.95696 0.92589 0.89320 0.96605 0.91043 0.96117 0.98882 0.93231 0.91303 0.93262 0.90694 0.91862 0.95948 0.91150 0.83698 0.93894 0.90016 0.93074 0.91237 0.92887 0.94370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 8.42 37.16 0.31 -2.64 16 2 C 0.05 0.86 3.54 -3.82 -0.01 0.85 16 3 N -0.52 -10.95 4.04 -228.28 -0.92 -11.87 16 4 C 0.19 4.98 4.64 -4.97 -0.02 4.96 16 5 C -0.49 -13.53 6.42 -34.44 -0.22 -13.75 16 6 H 0.07 1.92 5.79 -52.49 -0.30 1.62 16 7 C 0.05 1.41 5.46 -17.82 -0.10 1.31 16 8 N -0.90 -26.72 13.29 55.43 0.74 -25.99 16 9 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 10 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 C 0.09 1.69 2.84 -67.88 -0.19 1.50 16 14 H 0.10 1.94 6.33 -51.93 -0.33 1.61 16 15 C -0.14 -2.27 2.68 -91.47 -0.25 -2.52 16 16 H 0.10 1.54 4.95 -51.93 -0.26 1.29 16 17 C -0.11 -1.63 5.67 -27.55 -0.16 -1.79 16 18 C -0.12 -1.61 5.89 -26.79 -0.16 -1.77 16 19 C 0.07 0.84 6.57 -4.05 -0.03 0.81 16 20 N -0.68 -8.37 4.96 -108.31 -0.54 -8.91 16 21 C 0.09 1.20 3.72 -68.69 -0.26 0.94 16 22 H 0.03 0.44 8.08 -51.93 -0.42 0.02 16 23 C -0.07 -1.06 1.35 -154.30 -0.21 -1.27 16 24 C -0.13 -1.80 7.34 37.16 0.27 -1.53 16 25 C -0.12 -1.79 8.83 37.16 0.33 -1.46 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 1.15 7.12 -51.93 -0.37 0.78 16 28 H 0.09 2.06 5.80 -51.93 -0.30 1.76 16 29 H 0.02 0.31 6.75 -51.93 -0.35 -0.04 16 30 H 0.07 1.20 3.44 -51.93 -0.18 1.02 16 31 H 0.02 0.58 7.62 -51.93 -0.40 0.18 16 32 H -0.01 -0.19 7.94 -51.93 -0.41 -0.60 16 33 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 1.17 7.02 -51.93 -0.36 0.81 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.02 0.25 8.13 -51.93 -0.42 -0.17 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.34 3.54 8.90 -39.29 -0.35 3.19 16 41 H 0.04 0.55 8.06 -51.93 -0.42 0.13 16 42 H 0.08 1.34 6.68 -51.93 -0.35 0.99 16 43 H 0.05 0.70 5.83 -51.93 -0.30 0.40 16 44 H 0.07 1.02 7.02 -51.93 -0.36 0.65 16 45 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.04 0.49 8.13 -51.93 -0.42 0.06 16 LS Contribution 327.27 15.07 4.93 4.93 Total: -1.00 -28.46 327.27 -9.47 -37.94 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -7.98 Total: 3.59 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: -0.68 Total: -16.34 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: -0.72 Total: -46.76 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.46 -9.47 -37.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693695863.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.002 kcal (2) G-P(sol) polarization free energy of solvation -28.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds