Wall clock time and date at job start Mon Mar 30 2020 05:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46902 * 109.47296 * 2 1 4 4 C 1.46908 * 110.99569 * 299.12522 * 3 2 1 5 5 C 1.50699 * 109.47165 * 76.00381 * 4 3 2 6 6 H 1.07999 * 120.00131 * 4.19514 * 5 4 3 7 7 C 1.37880 * 119.99628 * 184.20339 * 5 4 3 8 8 N 1.31511 * 120.00272 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99651 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47163 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.46823 * 119.99766 * 9 7 5 12 12 H 1.48500 * 109.46710 * 239.99733 * 9 7 5 13 13 C 1.46898 * 111.00195 * 175.16798 * 3 2 1 14 14 H 1.09005 * 112.97310 * 154.42991 * 13 3 2 15 15 C 1.53507 * 113.69715 * 22.91732 * 13 3 2 16 16 H 1.09000 * 112.30018 * 332.18372 * 15 13 3 17 17 C 1.51659 * 114.25392 * 100.98467 * 15 13 3 18 18 C 1.52729 * 111.06811 * 64.48233 * 17 15 13 19 19 C 1.53150 * 108.68491 * 54.59237 * 18 17 15 20 20 N 1.46349 * 109.06418 * 292.69742 * 19 18 17 21 21 C 1.44898 * 113.62117 * 58.13457 * 20 19 18 22 22 H 1.09003 * 110.22715 * 94.02955 * 21 20 19 23 23 C 1.52270 * 113.15841 * 285.53395 * 13 3 2 24 24 C 1.53005 * 114.49952 * 26.39263 * 23 13 3 25 25 C 1.52997 * 113.08403 * 255.11166 * 23 13 3 26 26 H 1.09003 * 109.47124 * 187.40314 * 1 2 3 27 27 H 1.09003 * 109.46982 * 307.40021 * 1 2 3 28 28 H 1.08994 * 109.47438 * 67.39848 * 1 2 3 29 29 H 1.09002 * 109.47540 * 240.00003 * 2 1 3 30 30 H 1.08999 * 109.47596 * 119.99482 * 2 1 3 31 31 H 1.09001 * 109.46530 * 195.99895 * 4 3 2 32 32 H 1.08995 * 109.46892 * 315.99607 * 4 3 2 33 33 H 0.96998 * 120.00222 * 180.02562 * 8 7 5 34 34 H 1.09000 * 109.16234 * 304.07271 * 17 15 13 35 35 H 1.08998 * 109.11886 * 184.86138 * 17 15 13 36 36 H 1.09004 * 109.59945 * 294.83236 * 18 17 15 37 37 H 1.08997 * 109.73960 * 174.42744 * 18 17 15 38 38 H 1.08991 * 109.55244 * 52.59567 * 19 18 17 39 39 H 1.09000 * 109.55545 * 172.79918 * 19 18 17 40 40 H 1.00899 * 111.00276 * 184.89617 * 20 19 18 41 41 H 1.08997 * 109.47415 * 188.86675 * 24 23 13 42 42 H 1.09000 * 109.47219 * 308.87209 * 24 23 13 43 43 H 1.09003 * 109.47095 * 68.86538 * 24 23 13 44 44 H 1.08998 * 109.46916 * 303.91506 * 25 23 13 45 45 H 1.08997 * 109.47172 * 63.91391 * 25 23 13 46 46 H 1.09003 * 109.47078 * 183.91632 * 25 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5658 2.1038 -1.1981 5 6 0.1117 2.4686 -1.0444 6 1 -0.4039 2.2544 -0.1199 7 6 -0.5604 3.0755 -2.0841 8 7 0.0676 3.3366 -3.2097 9 14 -2.3630 3.5271 -1.8937 10 1 -2.8327 3.1298 -0.5422 11 1 -2.5266 4.9931 -2.0641 12 1 -3.1626 2.8166 -2.9239 13 6 3.4835 1.4258 0.1155 14 1 3.9188 2.3301 -0.3100 15 6 4.1748 0.1339 -0.3423 16 1 3.5369 -0.7417 -0.2216 17 6 4.7758 0.2080 -1.7327 18 6 5.9088 1.2307 -1.7874 19 6 6.9318 0.8882 -0.7003 20 7 6.3241 1.1052 0.6133 21 6 5.1222 0.3262 0.8328 22 1 5.3654 -0.6069 1.3411 23 6 3.9827 1.1057 1.5180 24 6 3.0422 0.2220 2.3399 25 6 4.4583 2.3428 2.2824 26 1 -0.3633 -1.0191 0.1324 27 1 -0.3633 0.6242 0.8164 28 1 -0.3634 0.3949 -0.9487 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 2.1567 3.0111 -1.3230 32 1 1.6899 1.4660 -2.0732 33 1 -0.4051 3.7640 -3.9409 34 1 4.0003 0.4950 -2.4429 35 1 5.1656 -0.7726 -2.0059 36 1 5.5087 2.2293 -1.6115 37 1 6.3891 1.1962 -2.7652 38 1 7.2303 -0.1556 -0.7961 39 1 7.8068 1.5292 -0.8077 40 1 6.9979 0.9647 1.3511 41 1 3.3961 0.1740 3.3697 42 1 2.0374 0.6440 2.3203 43 1 3.0230 -0.7817 1.9152 44 1 5.2306 2.8516 1.7056 45 1 3.6175 3.0184 2.4392 46 1 4.8656 2.0396 3.2469 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693695863.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:50 Heat of formation + Delta-G solvation = 21.966021 kcal Electronic energy + Delta-G solvation = -22608.740104 eV Core-core repulsion = 19726.540699 eV Total energy + Delta-G solvation = -2882.199405 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.38446 -38.02106 -36.00913 -34.42633 -33.29849 -31.35203 -30.70940 -29.11763 -28.12272 -26.31470 -24.61349 -23.86985 -23.59491 -21.42414 -20.25301 -18.80567 -18.23751 -17.71040 -16.76902 -16.28928 -16.01511 -15.60583 -15.41404 -15.13672 -14.91969 -14.57356 -14.21959 -14.01720 -13.76240 -13.63453 -13.28520 -13.01639 -12.91957 -12.74451 -12.65451 -12.64447 -12.42786 -12.17412 -12.03888 -11.97422 -11.84572 -11.43311 -11.31958 -11.29348 -11.03433 -10.81776 -10.58153 -10.46293 -9.06435 -8.74898 -8.12177 -6.16776 1.39975 1.41080 1.54132 2.43118 3.13847 3.18340 3.39861 3.54162 3.74451 3.86678 4.02754 4.12962 4.18733 4.36290 4.40262 4.51189 4.57309 4.63639 4.66017 4.70080 4.80694 4.82034 4.90245 4.95823 5.04142 5.05426 5.09196 5.10324 5.16965 5.21402 5.25851 5.27319 5.32250 5.40238 5.44449 5.48655 5.69776 5.72260 5.77665 5.82104 6.18540 6.32088 6.54410 6.69909 6.80552 6.96800 7.47516 8.97922 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.023726 B = 0.006239 C = 0.005660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.873273 B = 4486.777332 C = 4945.566447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.048 3.952 3 N -0.526 5.526 4 C 0.217 3.783 5 C -0.498 4.498 6 H 0.073 0.927 7 C -0.005 4.005 8 N -0.940 5.940 9 Si 0.960 3.040 10 H -0.261 1.261 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.079 3.921 14 H 0.065 0.935 15 C -0.143 4.143 16 H 0.096 0.904 17 C -0.107 4.107 18 C -0.117 4.117 19 C 0.079 3.921 20 N -0.690 5.690 21 C 0.106 3.894 22 H 0.056 0.944 23 C -0.067 4.067 24 C -0.123 4.123 25 C -0.117 4.117 26 H 0.058 0.942 27 H 0.048 0.952 28 H 0.049 0.951 29 H 0.007 0.993 30 H 0.106 0.894 31 H -0.016 1.016 32 H -0.042 1.042 33 H 0.259 0.741 34 H 0.028 0.972 35 H 0.069 0.931 36 H 0.044 0.956 37 H 0.076 0.924 38 H 0.037 0.963 39 H 0.090 0.910 40 H 0.362 0.638 41 H 0.068 0.932 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.031 0.969 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.684 -8.853 9.397 18.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.079 4.079 3 N -0.248 5.248 4 C 0.091 3.909 5 C -0.537 4.537 6 H 0.091 0.909 7 C -0.202 4.202 8 N -0.582 5.582 9 Si 0.785 3.215 10 H -0.184 1.184 11 H -0.209 1.209 12 H -0.208 1.208 13 C -0.031 4.031 14 H 0.083 0.917 15 C -0.163 4.163 16 H 0.114 0.886 17 C -0.145 4.145 18 C -0.155 4.155 19 C -0.049 4.049 20 N -0.324 5.324 21 C -0.005 4.005 22 H 0.074 0.926 23 C -0.069 4.069 24 C -0.180 4.180 25 C -0.174 4.174 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.025 0.975 30 H 0.124 0.876 31 H 0.002 0.998 32 H -0.024 1.024 33 H 0.068 0.932 34 H 0.047 0.953 35 H 0.087 0.913 36 H 0.063 0.937 37 H 0.095 0.905 38 H 0.056 0.944 39 H 0.109 0.891 40 H 0.183 0.817 41 H 0.087 0.913 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.050 0.950 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 12.097 -8.031 9.429 17.313 hybrid contribution -0.465 -0.475 -1.419 1.567 sum 11.632 -8.506 8.010 16.487 Atomic orbital electron populations 1.21999 0.95734 0.99760 1.02448 1.22533 0.95926 0.89340 1.00090 1.62115 1.09002 1.13983 1.39688 1.19286 0.95022 0.90823 0.85797 1.21705 0.95859 1.36309 0.99777 0.90866 1.25865 1.02824 0.96399 0.95101 1.70116 1.38239 1.44615 1.05276 0.85464 0.79884 0.77649 0.78477 1.18441 1.20913 1.20757 1.22997 0.86590 0.96159 0.97307 0.91707 1.22827 0.98650 1.00314 0.94504 0.88608 1.20992 0.97680 0.99759 0.96034 1.21536 0.96218 0.98321 0.99440 1.21651 0.96001 0.99556 0.87700 1.57961 1.07899 1.61704 1.04877 1.21523 0.89533 0.94101 0.95338 0.92601 1.21825 0.94737 0.96577 0.93731 1.21721 0.99308 0.97970 0.98989 1.21469 1.00101 0.96313 0.99566 0.92352 0.93262 0.93157 0.97535 0.87634 0.99820 1.02435 0.93179 0.95300 0.91256 0.93705 0.90530 0.94443 0.89147 0.81707 0.91332 0.92218 0.92000 0.91705 0.95032 0.91775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.66 8.42 71.98 0.61 -5.05 16 2 C 0.05 1.84 3.54 86.30 0.31 2.14 16 3 N -0.53 -22.90 4.04 -876.16 -3.54 -26.44 16 4 C 0.22 11.91 4.64 85.56 0.40 12.31 16 5 C -0.50 -28.36 6.42 25.60 0.16 -28.20 16 6 H 0.07 4.07 5.79 -2.91 -0.02 4.05 16 7 C -0.01 -0.31 5.46 84.66 0.46 0.15 16 8 N -0.94 -58.30 13.29 21.45 0.28 -58.01 16 9 Si 0.96 45.40 29.54 68.60 2.03 47.42 16 10 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 11 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 13 C 0.08 2.91 2.84 44.81 0.13 3.04 16 14 H 0.06 2.80 6.33 -2.38 -0.02 2.79 16 15 C -0.14 -4.39 2.68 -11.35 -0.03 -4.42 16 16 H 0.10 2.95 4.95 -2.39 -0.01 2.94 16 17 C -0.11 -3.31 5.67 30.06 0.17 -3.14 16 18 C -0.12 -3.20 5.89 30.55 0.18 -3.02 16 19 C 0.08 1.64 6.57 86.46 0.57 2.21 16 20 N -0.69 -15.06 4.96 -496.60 -2.46 -17.52 16 21 C 0.11 2.64 3.72 45.36 0.17 2.80 16 22 H 0.06 1.21 8.08 -2.39 -0.02 1.19 16 23 C -0.07 -1.92 1.35 -52.05 -0.07 -1.99 16 24 C -0.12 -3.18 7.34 71.98 0.53 -2.65 16 25 C -0.12 -3.23 8.83 71.98 0.64 -2.59 16 26 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.05 2.00 7.12 -2.39 -0.02 1.98 16 28 H 0.05 2.39 5.80 -2.39 -0.01 2.37 16 29 H 0.01 0.26 6.75 -2.39 -0.02 0.25 16 30 H 0.11 3.33 3.44 -2.39 -0.01 3.33 16 31 H -0.02 -1.00 7.62 -2.39 -0.02 -1.01 16 32 H -0.04 -2.56 7.94 -2.39 -0.02 -2.57 16 33 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 34 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.04 1.48 7.02 -2.39 -0.02 1.47 16 37 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.04 0.70 8.13 -2.39 -0.02 0.68 16 39 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.36 5.98 8.90 -89.69 -0.80 5.18 16 41 H 0.07 1.46 8.06 -2.39 -0.02 1.44 16 42 H 0.06 1.84 6.68 -2.39 -0.02 1.82 16 43 H 0.06 1.46 5.83 -2.39 -0.01 1.45 16 44 H 0.06 1.84 7.02 -2.39 -0.02 1.82 16 45 H 0.03 0.98 8.14 -2.39 -0.02 0.97 16 46 H 0.06 1.43 8.13 -2.39 -0.02 1.41 16 Total: -1.00 -65.37 327.27 0.69 -64.68 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: 0.16 Total: 18.28 kcal Atomic # 6 Polarization: -32.62 SS G_CDS: 4.21 Total: -28.41 kcal Atomic # 7 Polarization: -96.26 SS G_CDS: -5.71 Total: -101.98 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.42 kcal Total: -65.37 0.69 -64.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693695863.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.650 kcal (2) G-P(sol) polarization free energy of solvation -65.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds