Wall clock time and date at job start Mon Mar 30 2020 05:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47337 * 2 1 4 4 C 1.50703 * 109.47277 * 240.00606 * 2 1 3 5 5 H 1.07998 * 119.99927 * 240.00488 * 4 2 1 6 6 C 1.37877 * 120.00018 * 59.99615 * 4 2 1 7 7 N 1.31520 * 120.00100 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99953 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47466 * 90.00032 * 8 6 4 10 10 H 1.48503 * 109.47063 * 209.99986 * 8 6 4 11 11 H 1.48492 * 109.47153 * 329.99682 * 8 6 4 12 12 N 1.46899 * 109.47599 * 120.00462 * 2 1 3 13 13 C 1.46905 * 110.99842 * 53.06685 * 12 2 1 14 14 C 1.46899 * 110.99889 * 289.11417 * 12 2 1 15 15 H 1.09000 * 113.28814 * 66.95262 * 14 12 2 16 16 C 1.50515 * 114.06224 * 294.23801 * 14 12 2 17 17 H 1.08999 * 113.10610 * 168.25341 * 16 14 12 18 18 C 1.51955 * 124.07218 * 26.07908 * 16 14 12 19 19 C 1.54570 * 105.12730 * 202.23827 * 18 16 14 20 20 C 1.52352 * 112.12835 * 54.96193 * 19 18 16 21 21 N 1.47996 * 112.89679 * 307.93550 * 20 19 18 22 22 C 1.44969 * 107.48931 * 57.28245 * 21 20 19 23 23 H 1.09005 * 111.35156 * 55.04122 * 22 21 20 24 24 C 1.50148 * 126.44094 * 197.53740 * 22 21 20 25 25 C 1.52998 * 114.06974 * 255.27739 * 24 22 21 26 26 C 1.52997 * 114.06995 * 27.48535 * 24 22 21 27 27 H 1.09000 * 109.47003 * 299.99334 * 1 2 3 28 28 H 1.09001 * 109.47478 * 59.99617 * 1 2 3 29 29 H 1.09002 * 109.47337 * 179.97438 * 1 2 3 30 30 H 0.96992 * 120.00002 * 180.02562 * 7 6 4 31 31 H 1.08994 * 109.46821 * 300.66745 * 13 12 2 32 32 H 1.08995 * 109.46819 * 60.66866 * 13 12 2 33 33 H 1.08994 * 109.46922 * 180.67037 * 13 12 2 34 34 H 1.09000 * 110.28032 * 321.24440 * 18 16 14 35 35 H 1.09000 * 110.27923 * 83.39310 * 18 16 14 36 36 H 1.09003 * 108.98910 * 294.25651 * 19 18 16 37 37 H 1.08991 * 108.84583 * 175.57799 * 19 18 16 38 38 H 1.08999 * 108.79723 * 187.04991 * 20 19 18 39 39 H 1.09006 * 108.79898 * 68.81302 * 20 19 18 40 40 H 1.00902 * 111.00223 * 178.85068 * 21 20 19 41 41 H 1.08998 * 109.47063 * 73.76549 * 25 24 22 42 42 H 1.08999 * 109.46956 * 193.76301 * 25 24 22 43 43 H 1.08995 * 109.47499 * 313.76112 * 25 24 22 44 44 H 1.08996 * 109.46980 * 40.49501 * 26 24 22 45 45 H 1.08995 * 109.47102 * 160.49309 * 26 24 22 46 46 H 1.09007 * 109.47119 * 280.49388 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8304 -2.6034 8 14 2.3213 -1.1200 -4.0080 9 1 1.3428 -2.1614 -4.4121 10 1 2.4865 -0.1409 -5.1123 11 1 3.6293 -1.7578 -3.7124 12 7 2.0197 -0.6926 1.1993 13 6 1.4183 -2.0275 1.3188 14 6 1.7719 0.1065 2.4068 15 1 0.7131 0.2144 2.6424 16 6 2.5466 1.3959 2.4591 17 1 2.2066 2.0675 3.2474 18 6 3.0384 2.1440 1.2313 19 6 4.2084 3.0199 1.7344 20 6 5.2769 2.1977 2.4440 21 7 4.7246 1.3347 3.5119 22 6 3.7265 0.4758 2.9055 23 1 4.1404 -0.0818 2.0653 24 6 2.6554 -0.2926 3.6244 25 6 2.9294 -1.7940 3.7310 26 6 2.2192 0.3358 4.9494 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 0.7088 1.1616 -3.4843 31 1 0.3339 -1.9336 1.3760 32 1 1.6858 -2.6258 0.4479 33 1 1.7889 -2.5135 2.2213 34 1 3.3877 1.4409 0.4752 35 1 2.2436 2.7713 0.8277 36 1 3.8200 3.7677 2.4258 37 1 4.6602 3.5273 0.8821 38 1 6.0079 2.8762 2.8836 39 1 5.7814 1.5690 1.7102 40 1 5.4526 0.7901 3.9495 41 1 3.7111 -1.9691 4.4702 42 1 2.0185 -2.3087 4.0367 43 1 3.2537 -2.1740 2.7623 44 1 2.1590 1.4182 4.8358 45 1 1.2417 -0.0547 5.2323 46 1 2.9462 0.0916 5.7241 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693698311.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:44 Heat of formation + Delta-G solvation = 65.618672 kcal Electronic energy + Delta-G solvation = -22886.052269 eV Core-core repulsion = 20005.745785 eV Total energy + Delta-G solvation = -2880.306484 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.10421 -36.45511 -35.03596 -32.33888 -31.81057 -29.84998 -28.64968 -26.95588 -25.75346 -25.15450 -24.22931 -22.78094 -21.18171 -19.50175 -19.36807 -17.50450 -16.09322 -15.86674 -15.33005 -14.67321 -14.29806 -14.03045 -13.88821 -13.67590 -13.08938 -12.85337 -12.80131 -12.51682 -12.14028 -11.99376 -11.98056 -11.64009 -11.38000 -11.23937 -11.10887 -10.93209 -10.80830 -10.69891 -10.56882 -10.20430 -10.05577 -9.99189 -9.82898 -9.63664 -9.27656 -8.86506 -8.69865 -8.26716 -8.15431 -7.02485 -5.97593 -4.00093 3.31039 3.38064 3.41549 4.37664 4.43307 4.71230 4.95248 5.07205 5.16141 5.34604 5.43556 5.53407 5.56567 5.68283 5.73341 5.91275 5.91630 6.04579 6.07651 6.11332 6.19239 6.24289 6.26273 6.34530 6.36922 6.41532 6.44755 6.53398 6.58076 6.66360 6.75821 6.82576 6.89385 6.96957 7.03919 7.12816 7.26576 7.36205 7.59243 7.73487 7.76924 7.89750 8.23388 8.44729 8.67695 9.06127 9.64164 11.09209 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.020650 B = 0.007320 C = 0.006359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.627986 B = 3824.073357 C = 4402.267180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.193 3.807 3 H 0.067 0.933 4 C -0.495 4.495 5 H 0.059 0.941 6 C 0.058 3.942 7 N -0.894 5.894 8 Si 0.892 3.108 9 H -0.283 1.283 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.511 5.511 13 C 0.014 3.986 14 C 0.082 3.918 15 H 0.039 0.961 16 C -0.107 4.107 17 H 0.090 0.910 18 C -0.109 4.109 19 C -0.115 4.115 20 C 0.061 3.939 21 N -0.662 5.662 22 C 0.051 3.949 23 H 0.081 0.919 24 C -0.060 4.060 25 C -0.139 4.139 26 C -0.118 4.118 27 H 0.004 0.996 28 H 0.085 0.915 29 H 0.028 0.972 30 H 0.259 0.741 31 H 0.016 0.984 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.093 0.907 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.027 0.973 40 H 0.325 0.675 41 H 0.042 0.958 42 H 0.050 0.950 43 H 0.078 0.922 44 H 0.063 0.937 45 H 0.047 0.953 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.547 0.318 11.762 12.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.088 3.912 3 H 0.085 0.915 4 C -0.534 4.534 5 H 0.077 0.923 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.720 3.280 9 H -0.210 1.210 10 H -0.214 1.214 11 H -0.200 1.200 12 N -0.235 5.235 13 C -0.134 4.134 14 C -0.028 4.028 15 H 0.057 0.943 16 C -0.126 4.126 17 H 0.108 0.892 18 C -0.146 4.146 19 C -0.152 4.152 20 C -0.068 4.068 21 N -0.292 5.292 22 C -0.059 4.059 23 H 0.099 0.901 24 C -0.061 4.061 25 C -0.196 4.196 26 C -0.175 4.175 27 H 0.023 0.977 28 H 0.104 0.896 29 H 0.047 0.953 30 H 0.069 0.931 31 H 0.034 0.966 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.112 0.888 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.046 0.954 40 H 0.141 0.859 41 H 0.061 0.939 42 H 0.069 0.931 43 H 0.096 0.904 44 H 0.082 0.918 45 H 0.066 0.934 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.554 0.883 11.806 12.684 hybrid contribution -0.159 -0.952 -1.395 1.697 sum 4.395 -0.068 10.411 11.300 Atomic orbital electron populations 1.22398 1.01322 0.99143 1.00239 1.19742 0.89642 0.96304 0.85526 0.91549 1.21109 1.30249 1.12265 0.89743 0.92288 1.24893 0.95393 0.95167 0.98809 1.69886 1.37216 1.23048 1.23208 0.86595 0.79179 0.79323 0.82864 1.20954 1.21391 1.20001 1.62248 1.57896 1.02057 1.01292 1.22660 0.96680 0.92343 1.01750 1.22249 0.95155 0.93971 0.91461 0.94281 1.22599 0.97014 0.94697 0.98297 0.89240 1.21806 0.96492 0.98704 0.97593 1.21651 0.96515 0.98168 0.98909 1.21844 0.96403 0.95894 0.92659 1.61280 1.15711 1.23160 1.29003 1.22853 0.91322 0.94993 0.96694 0.90134 1.21567 0.95953 0.94378 0.94199 1.21960 1.00222 0.95233 1.02162 1.21498 0.99940 1.00924 0.95147 0.97650 0.89598 0.95271 0.93141 0.96555 0.91413 0.91898 0.88826 0.92209 0.92510 0.92121 0.91829 0.95424 0.85881 0.93901 0.93144 0.90354 0.91771 0.93429 0.92769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.17 8.23 37.15 0.31 -3.86 16 2 C 0.19 4.65 1.65 -68.87 -0.11 4.54 16 3 H 0.07 1.69 3.88 -51.93 -0.20 1.49 16 4 C -0.49 -13.19 7.98 -34.44 -0.27 -13.46 16 5 H 0.06 1.59 7.16 -52.49 -0.38 1.22 16 6 C 0.06 1.57 5.30 -17.82 -0.09 1.48 16 7 N -0.89 -25.07 11.32 55.43 0.63 -24.44 16 8 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 N -0.51 -10.42 3.23 -232.51 -0.75 -11.17 16 13 C 0.01 0.26 8.14 60.07 0.49 0.75 16 14 C 0.08 1.47 2.57 -71.17 -0.18 1.29 16 15 H 0.04 0.75 7.19 -51.93 -0.37 0.38 16 16 C -0.11 -1.84 3.08 -93.85 -0.29 -2.13 16 17 H 0.09 1.50 6.15 -51.93 -0.32 1.18 16 18 C -0.11 -1.99 4.11 -26.44 -0.11 -2.10 16 19 C -0.11 -1.73 5.92 -26.24 -0.16 -1.89 16 20 C 0.06 0.85 6.40 -3.55 -0.02 0.83 16 21 N -0.66 -9.28 6.92 -111.23 -0.77 -10.05 16 22 C 0.05 0.81 2.76 -72.11 -0.20 0.61 16 23 H 0.08 1.52 7.17 -51.93 -0.37 1.14 16 24 C -0.06 -0.90 1.45 -157.66 -0.23 -1.13 16 25 C -0.14 -1.95 7.46 37.16 0.28 -1.67 16 26 C -0.12 -1.55 9.02 37.16 0.33 -1.22 16 27 H 0.00 0.10 6.96 -51.93 -0.36 -0.26 16 28 H 0.09 2.31 6.07 -51.93 -0.32 1.99 16 29 H 0.03 0.69 6.31 -51.93 -0.33 0.36 16 30 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.02 0.32 6.16 -51.93 -0.32 0.00 16 32 H 0.07 1.39 6.94 -51.93 -0.36 1.03 16 33 H 0.06 1.03 3.89 -51.93 -0.20 0.83 16 34 H 0.09 2.02 6.19 -51.93 -0.32 1.69 16 35 H 0.06 1.16 7.84 -51.93 -0.41 0.75 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.03 0.41 8.12 -51.93 -0.42 -0.02 16 40 H 0.33 4.06 8.89 -39.29 -0.35 3.71 16 41 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.05 0.67 7.50 -51.93 -0.39 0.28 16 43 H 0.08 1.22 5.89 -51.93 -0.31 0.91 16 44 H 0.06 0.88 6.09 -51.93 -0.32 0.56 16 45 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 321.99 15.07 4.85 4.85 Total: -1.00 -26.78 321.99 -9.04 -35.81 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -7.71 Total: 6.73 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: -0.26 Total: -17.95 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: -0.89 Total: -45.67 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -26.78 -9.04 -35.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693698311.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.432 kcal (2) G-P(sol) polarization free energy of solvation -26.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds