Wall clock time and date at job start Mon Mar 30 2020 05:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47126 * 2 1 4 4 C 1.50702 * 109.47491 * 240.00103 * 2 1 3 5 5 H 1.07997 * 119.99842 * 245.43056 * 4 2 1 6 6 C 1.37878 * 119.99891 * 65.42054 * 4 2 1 7 7 N 1.31514 * 119.99820 * 185.95091 * 6 4 2 8 8 Si 1.86799 * 119.99903 * 5.96291 * 6 4 2 9 9 H 1.48498 * 109.46956 * 269.98990 * 8 6 4 10 10 H 1.48496 * 109.47243 * 29.99412 * 8 6 4 11 11 H 1.48499 * 109.46862 * 149.99635 * 8 6 4 12 12 N 1.46903 * 109.46930 * 120.00036 * 2 1 3 13 13 C 1.46906 * 110.99721 * 176.04526 * 12 2 1 14 14 C 1.46895 * 110.99928 * 299.99866 * 12 2 1 15 15 H 1.09000 * 112.91114 * 27.46572 * 14 12 2 16 16 C 1.53513 * 113.69913 * 255.88581 * 14 12 2 17 17 H 1.09002 * 112.29959 * 333.01724 * 16 14 12 18 18 C 1.51662 * 114.25347 * 100.98894 * 16 14 12 19 19 C 1.52725 * 111.06773 * 64.48260 * 18 16 14 20 20 C 1.53149 * 108.68175 * 54.59369 * 19 18 16 21 21 N 1.46346 * 108.98351 * 292.73923 * 20 19 18 22 22 C 1.45797 * 113.31441 * 59.15256 * 21 20 19 23 23 H 1.08996 * 112.37744 * 93.03406 * 22 21 20 24 24 C 1.53877 * 113.69599 * 158.91438 * 14 12 2 25 25 C 1.53001 * 113.65087 * 254.39898 * 24 14 12 26 26 C 1.53001 * 113.65039 * 25.32465 * 24 14 12 27 27 H 1.08997 * 109.47492 * 296.46350 * 1 2 3 28 28 H 1.09008 * 109.46874 * 56.45846 * 1 2 3 29 29 H 1.09003 * 109.47172 * 176.45642 * 1 2 3 30 30 H 0.97002 * 120.00179 * 354.98951 * 7 6 4 31 31 H 1.09002 * 109.46984 * 64.11699 * 13 12 2 32 32 H 1.08998 * 109.46403 * 184.11123 * 13 12 2 33 33 H 1.08991 * 109.47058 * 304.11620 * 13 12 2 34 34 H 1.09000 * 109.15738 * 304.07115 * 18 16 14 35 35 H 1.08998 * 109.15809 * 184.89317 * 18 16 14 36 36 H 1.08993 * 109.60669 * 294.82962 * 19 18 16 37 37 H 1.09007 * 109.72887 * 174.42865 * 19 18 16 38 38 H 1.09002 * 109.54832 * 172.88871 * 20 19 18 39 39 H 1.08996 * 109.63598 * 52.64257 * 20 19 18 40 40 H 1.00898 * 110.99740 * 293.46164 * 21 20 19 41 41 H 1.09002 * 109.47171 * 70.91423 * 25 24 14 42 42 H 1.09001 * 109.47147 * 190.91911 * 25 24 14 43 43 H 1.08999 * 109.46820 * 310.91928 * 25 24 14 44 44 H 1.09001 * 109.46766 * 69.51616 * 26 24 14 45 45 H 1.08996 * 109.47148 * 189.51471 * 26 24 14 46 46 H 1.09000 * 109.46782 * 309.51626 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5791 -1.6367 -1.1338 6 6 1.7940 -0.1777 -2.4796 7 7 2.1282 -0.8534 -3.5573 8 14 0.9965 1.5037 -2.6413 9 1 -0.4792 1.3481 -2.6994 10 1 1.3605 2.3390 -1.4688 11 1 1.4742 2.1606 -3.8845 12 7 2.0196 -0.6925 1.1995 13 6 3.4851 -0.7946 1.1870 14 6 1.5486 -0.0264 2.4210 15 1 0.6067 0.5036 2.2792 16 6 2.6284 0.8077 3.1245 17 1 3.6335 0.4359 2.9251 18 6 2.5312 2.2988 2.8653 19 6 1.2380 2.8729 3.4403 20 6 1.1567 2.5073 4.9253 21 7 0.9879 1.0591 5.0505 22 6 2.0742 0.2971 4.4465 23 1 2.8579 0.0522 5.1634 24 6 1.5676 -0.9313 3.6655 25 6 0.1796 -1.4057 4.1006 26 6 2.5859 -2.0701 3.5808 27 1 -0.3634 0.4579 0.9199 28 1 -0.3633 0.5679 -0.8566 29 1 -0.3634 -1.0257 -0.0635 30 1 2.6076 -1.6926 -3.4744 31 1 3.9192 0.2042 1.2330 32 1 3.8161 -1.3746 2.0485 33 1 3.8071 -1.2889 0.2706 34 1 2.5550 2.4773 1.7903 35 1 3.3817 2.7987 3.3288 36 1 0.3835 2.4499 2.9122 37 1 1.2358 3.9573 3.3299 38 1 0.3056 3.0145 5.3796 39 1 2.0742 2.8125 5.4284 40 1 0.0941 0.7663 4.6851 41 1 -0.1996 -2.1298 3.3795 42 1 0.2467 -1.8725 5.0833 43 1 -0.4972 -0.5527 4.1490 44 1 3.5944 -1.6605 3.6361 45 1 2.4283 -2.7608 4.4091 46 1 2.4603 -2.6003 2.6367 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693698315.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:51 Heat of formation + Delta-G solvation = 41.169854 kcal Electronic energy + Delta-G solvation = -22894.724111 eV Core-core repulsion = 20013.357447 eV Total energy + Delta-G solvation = -2881.366664 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.38196 -36.67985 -34.90506 -32.78928 -31.72045 -29.95318 -29.74042 -27.46155 -26.39009 -24.53911 -23.91247 -23.05335 -22.08501 -19.55463 -19.29013 -17.56958 -17.48134 -16.02505 -15.65461 -15.17551 -14.68994 -14.52396 -13.89915 -13.76295 -13.53697 -13.18528 -12.75256 -12.49828 -12.40990 -12.36799 -12.15408 -11.87459 -11.72343 -11.44553 -11.34557 -11.20088 -11.11277 -10.83119 -10.59678 -10.53299 -10.29646 -10.11698 -10.06030 -9.87296 -9.64928 -9.53058 -8.63171 -8.45720 -8.16281 -7.20642 -6.42594 -4.05836 3.33778 3.39586 3.54704 4.26095 4.46012 4.58097 4.68022 4.79121 4.86464 5.08602 5.11480 5.15528 5.28691 5.31913 5.49963 5.54500 5.69673 5.74628 5.82585 5.88634 5.89896 5.99793 6.07149 6.08137 6.14275 6.15502 6.18552 6.23915 6.29491 6.34102 6.40273 6.49581 6.54038 6.59556 6.64387 6.73783 6.84976 6.92999 7.24156 7.33563 7.46296 7.74534 8.06294 8.32362 8.46212 8.97474 9.63072 10.98006 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.022601 B = 0.007284 C = 0.006391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.603984 B = 3842.927129 C = 4379.826474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.182 3.818 3 H -0.005 1.005 4 C -0.579 4.579 5 H 0.065 0.935 6 C 0.026 3.974 7 N -0.915 5.915 8 Si 1.053 2.947 9 H -0.284 1.284 10 H -0.283 1.283 11 H -0.291 1.291 12 N -0.509 5.509 13 C 0.021 3.979 14 C 0.070 3.930 15 H 0.094 0.906 16 C -0.169 4.169 17 H 0.100 0.900 18 C -0.105 4.105 19 C -0.157 4.157 20 C 0.065 3.935 21 N -0.679 5.679 22 C 0.087 3.913 23 H 0.079 0.921 24 C -0.082 4.082 25 C -0.129 4.129 26 C -0.122 4.122 27 H 0.024 0.976 28 H 0.043 0.957 29 H 0.056 0.944 30 H 0.267 0.733 31 H 0.014 0.986 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.343 0.657 41 H 0.061 0.939 42 H 0.055 0.945 43 H 0.051 0.949 44 H 0.053 0.947 45 H 0.046 0.954 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.275 4.334 16.696 17.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.075 3.925 3 H 0.013 0.987 4 C -0.618 4.618 5 H 0.083 0.917 6 C -0.178 4.178 7 N -0.551 5.551 8 Si 0.884 3.116 9 H -0.211 1.211 10 H -0.209 1.209 11 H -0.217 1.217 12 N -0.230 5.230 13 C -0.127 4.127 14 C -0.040 4.040 15 H 0.111 0.889 16 C -0.191 4.191 17 H 0.118 0.882 18 C -0.143 4.143 19 C -0.197 4.197 20 C -0.065 4.065 21 N -0.312 5.312 22 C -0.024 4.024 23 H 0.097 0.903 24 C -0.084 4.084 25 C -0.187 4.187 26 C -0.179 4.179 27 H 0.042 0.958 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.033 0.967 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.166 0.834 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.065 0.935 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.774 4.921 16.156 16.982 hybrid contribution 0.712 -0.060 0.017 0.714 sum -1.062 4.861 16.173 16.921 Atomic orbital electron populations 1.22179 0.98785 1.01195 0.97852 1.19711 0.91295 0.92586 0.88900 0.98734 1.22068 1.39188 1.10002 0.90521 0.91723 1.25660 0.96639 1.03433 0.92067 1.70804 1.37635 1.16371 1.30250 0.83869 0.76383 0.75980 0.75394 1.21114 1.20910 1.21732 1.61876 1.09545 1.50599 1.01021 1.22671 0.88461 0.99115 1.02444 1.23460 0.97523 0.92859 0.90195 0.88876 1.23189 1.01944 0.95532 0.98392 0.88218 1.20990 0.97079 0.95204 1.01043 1.22185 0.98625 1.00875 0.97968 1.21842 1.01971 0.88283 0.94376 1.59800 1.05479 1.04255 1.61632 1.22110 0.93677 0.93853 0.92789 0.90293 1.22283 0.96033 0.94390 0.95676 1.21622 0.95503 1.00648 1.00893 1.21679 0.96936 0.96902 1.02430 0.95763 0.93873 0.92452 0.92293 0.96732 0.91908 0.90649 0.91935 0.92603 0.92045 0.91687 0.91074 0.91169 0.83391 0.92026 0.92640 0.93063 0.92783 0.93538 0.90151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.75 37.16 0.33 -2.80 16 2 C 0.18 4.28 1.63 -68.86 -0.11 4.17 16 3 H 0.00 -0.12 6.61 -51.93 -0.34 -0.46 16 4 C -0.58 -16.00 8.09 -34.44 -0.28 -16.28 16 5 H 0.06 1.93 6.87 -52.49 -0.36 1.57 16 6 C 0.03 0.75 5.43 -17.82 -0.10 0.65 16 7 N -0.92 -28.15 13.70 55.43 0.76 -27.39 16 8 Si 1.05 25.76 25.34 -169.99 -4.31 21.46 16 9 H -0.28 -6.63 6.79 56.52 0.38 -6.25 16 10 H -0.28 -6.53 6.36 56.52 0.36 -6.17 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 N -0.51 -10.21 4.00 -227.43 -0.91 -11.12 16 13 C 0.02 0.40 7.36 60.07 0.44 0.84 16 14 C 0.07 1.15 2.62 -66.99 -0.18 0.98 16 15 H 0.09 1.62 4.43 -51.93 -0.23 1.39 16 16 C -0.17 -2.50 2.49 -91.47 -0.23 -2.73 16 17 H 0.10 1.54 4.90 -51.93 -0.25 1.28 16 18 C -0.11 -1.51 5.67 -27.55 -0.16 -1.67 16 19 C -0.16 -1.96 5.89 -26.80 -0.16 -2.12 16 20 C 0.06 0.73 6.56 -4.05 -0.03 0.70 16 21 N -0.68 -8.31 6.49 -107.64 -0.70 -9.01 16 22 C 0.09 1.15 4.02 -68.14 -0.27 0.87 16 23 H 0.08 1.05 8.08 -51.93 -0.42 0.63 16 24 C -0.08 -1.15 1.32 -153.47 -0.20 -1.35 16 25 C -0.13 -1.65 8.63 37.16 0.32 -1.33 16 26 C -0.12 -1.68 7.37 37.16 0.27 -1.40 16 27 H 0.02 0.46 5.93 -51.93 -0.31 0.15 16 28 H 0.04 0.96 4.44 -51.92 -0.23 0.73 16 29 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.27 8.18 8.72 -40.82 -0.36 7.83 16 31 H 0.01 0.27 6.57 -51.93 -0.34 -0.07 16 32 H 0.06 1.02 3.91 -51.93 -0.20 0.82 16 33 H 0.07 1.64 6.20 -51.93 -0.32 1.32 16 34 H 0.06 1.04 8.13 -51.93 -0.42 0.62 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.83 7.02 -51.93 -0.36 0.47 16 37 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.78 8.13 -51.93 -0.42 0.36 16 40 H 0.34 4.13 5.57 -39.29 -0.22 3.92 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.05 0.61 5.76 -51.93 -0.30 0.31 16 44 H 0.05 0.71 5.90 -51.93 -0.31 0.40 16 45 H 0.05 0.56 8.07 -51.93 -0.42 0.15 16 46 H 0.08 1.27 6.76 -51.93 -0.35 0.92 16 LS Contribution 316.46 15.07 4.77 4.77 Total: -1.00 -28.88 316.46 -8.30 -37.18 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -7.56 Total: 5.59 kcal Atomic # 6 Polarization: -21.12 SS G_CDS: -0.35 Total: -21.47 kcal Atomic # 7 Polarization: -46.67 SS G_CDS: -0.85 Total: -47.52 kcal Atomic # 14 Polarization: 25.76 SS G_CDS: -4.31 Total: 21.46 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.88 -8.30 -37.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693698315.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.346 kcal (2) G-P(sol) polarization free energy of solvation -28.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds