Wall clock time and date at job start Mon Mar 30 2020 05:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47126 * 2 1 4 4 C 1.50702 * 109.47491 * 240.00103 * 2 1 3 5 5 H 1.07997 * 119.99842 * 245.43056 * 4 2 1 6 6 C 1.37878 * 119.99891 * 65.42054 * 4 2 1 7 7 N 1.31514 * 119.99820 * 185.95091 * 6 4 2 8 8 Si 1.86799 * 119.99903 * 5.96291 * 6 4 2 9 9 H 1.48498 * 109.46956 * 269.98990 * 8 6 4 10 10 H 1.48496 * 109.47243 * 29.99412 * 8 6 4 11 11 H 1.48499 * 109.46862 * 149.99635 * 8 6 4 12 12 N 1.46903 * 109.46930 * 120.00036 * 2 1 3 13 13 C 1.46906 * 110.99721 * 176.04526 * 12 2 1 14 14 C 1.46895 * 110.99928 * 299.99866 * 12 2 1 15 15 H 1.09000 * 112.91114 * 27.46572 * 14 12 2 16 16 C 1.53513 * 113.69913 * 255.88581 * 14 12 2 17 17 H 1.09002 * 112.29959 * 333.01724 * 16 14 12 18 18 C 1.51662 * 114.25347 * 100.98894 * 16 14 12 19 19 C 1.52725 * 111.06773 * 64.48260 * 18 16 14 20 20 C 1.53149 * 108.68175 * 54.59369 * 19 18 16 21 21 N 1.46346 * 108.98351 * 292.73923 * 20 19 18 22 22 C 1.45797 * 113.31441 * 59.15256 * 21 20 19 23 23 H 1.08996 * 112.37744 * 93.03406 * 22 21 20 24 24 C 1.53877 * 113.69599 * 158.91438 * 14 12 2 25 25 C 1.53001 * 113.65087 * 254.39898 * 24 14 12 26 26 C 1.53001 * 113.65039 * 25.32465 * 24 14 12 27 27 H 1.08997 * 109.47492 * 296.46350 * 1 2 3 28 28 H 1.09008 * 109.46874 * 56.45846 * 1 2 3 29 29 H 1.09003 * 109.47172 * 176.45642 * 1 2 3 30 30 H 0.97002 * 120.00179 * 354.98951 * 7 6 4 31 31 H 1.09002 * 109.46984 * 64.11699 * 13 12 2 32 32 H 1.08998 * 109.46403 * 184.11123 * 13 12 2 33 33 H 1.08991 * 109.47058 * 304.11620 * 13 12 2 34 34 H 1.09000 * 109.15738 * 304.07115 * 18 16 14 35 35 H 1.08998 * 109.15809 * 184.89317 * 18 16 14 36 36 H 1.08993 * 109.60669 * 294.82962 * 19 18 16 37 37 H 1.09007 * 109.72887 * 174.42865 * 19 18 16 38 38 H 1.09002 * 109.54832 * 172.88871 * 20 19 18 39 39 H 1.08996 * 109.63598 * 52.64257 * 20 19 18 40 40 H 1.00898 * 110.99740 * 293.46164 * 21 20 19 41 41 H 1.09002 * 109.47171 * 70.91423 * 25 24 14 42 42 H 1.09001 * 109.47147 * 190.91911 * 25 24 14 43 43 H 1.08999 * 109.46820 * 310.91928 * 25 24 14 44 44 H 1.09001 * 109.46766 * 69.51616 * 26 24 14 45 45 H 1.08996 * 109.47148 * 189.51471 * 26 24 14 46 46 H 1.09000 * 109.46782 * 309.51626 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5791 -1.6367 -1.1338 6 6 1.7940 -0.1777 -2.4796 7 7 2.1282 -0.8534 -3.5573 8 14 0.9965 1.5037 -2.6413 9 1 -0.4792 1.3481 -2.6994 10 1 1.3605 2.3390 -1.4688 11 1 1.4742 2.1606 -3.8845 12 7 2.0196 -0.6925 1.1995 13 6 3.4851 -0.7946 1.1870 14 6 1.5486 -0.0264 2.4210 15 1 0.6067 0.5036 2.2792 16 6 2.6284 0.8077 3.1245 17 1 3.6335 0.4359 2.9251 18 6 2.5312 2.2988 2.8653 19 6 1.2380 2.8729 3.4403 20 6 1.1567 2.5073 4.9253 21 7 0.9879 1.0591 5.0505 22 6 2.0742 0.2971 4.4465 23 1 2.8579 0.0522 5.1634 24 6 1.5676 -0.9313 3.6655 25 6 0.1796 -1.4057 4.1006 26 6 2.5859 -2.0701 3.5808 27 1 -0.3634 0.4579 0.9199 28 1 -0.3633 0.5679 -0.8566 29 1 -0.3634 -1.0257 -0.0635 30 1 2.6076 -1.6926 -3.4744 31 1 3.9192 0.2042 1.2330 32 1 3.8161 -1.3746 2.0485 33 1 3.8071 -1.2889 0.2706 34 1 2.5550 2.4773 1.7903 35 1 3.3817 2.7987 3.3288 36 1 0.3835 2.4499 2.9122 37 1 1.2358 3.9573 3.3299 38 1 0.3056 3.0145 5.3796 39 1 2.0742 2.8125 5.4284 40 1 0.0941 0.7663 4.6851 41 1 -0.1996 -2.1298 3.3795 42 1 0.2467 -1.8725 5.0833 43 1 -0.4972 -0.5527 4.1490 44 1 3.5944 -1.6605 3.6361 45 1 2.4283 -2.7608 4.4091 46 1 2.4603 -2.6003 2.6367 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693698315.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:50 Heat of formation + Delta-G solvation = 21.289867 kcal Electronic energy + Delta-G solvation = -22895.586172 eV Core-core repulsion = 20013.357447 eV Total energy + Delta-G solvation = -2882.228725 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.57621 -38.17082 -36.18881 -34.58303 -33.15453 -31.61096 -30.80634 -28.71987 -27.80454 -26.32233 -25.26147 -24.25908 -23.32460 -21.29815 -20.44016 -19.57261 -18.76958 -17.43891 -16.92241 -16.41555 -16.19112 -15.60340 -15.45340 -15.20365 -14.83191 -14.62080 -14.07458 -14.03694 -13.85398 -13.60608 -13.48092 -13.39200 -13.16055 -12.79943 -12.78182 -12.52930 -12.33630 -12.31662 -12.08380 -11.92416 -11.79644 -11.68330 -11.55215 -11.22870 -11.08168 -10.78017 -10.72740 -10.58591 -9.17842 -8.80928 -8.72578 -6.36544 1.35359 1.45200 1.61406 2.41866 3.07782 3.21993 3.26830 3.46431 3.65197 3.74550 3.91685 4.07443 4.12046 4.21488 4.33930 4.45570 4.49873 4.52747 4.60010 4.65466 4.67632 4.70606 4.80982 4.85937 4.87404 4.93151 4.96625 4.99698 5.01455 5.08468 5.11349 5.15129 5.20663 5.22897 5.28629 5.41103 5.46024 5.53959 5.61498 5.83470 6.02697 6.23168 6.30083 6.52080 6.63457 6.75959 7.41664 8.66262 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.022601 B = 0.007284 C = 0.006391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.603984 B = 3842.927129 C = 4379.826474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.187 3.813 3 H -0.016 1.016 4 C -0.574 4.574 5 H 0.027 0.973 6 C -0.026 4.026 7 N -0.948 5.948 8 Si 1.089 2.911 9 H -0.262 1.262 10 H -0.262 1.262 11 H -0.292 1.292 12 N -0.518 5.518 13 C 0.030 3.970 14 C 0.060 3.940 15 H 0.089 0.911 16 C -0.167 4.167 17 H 0.091 0.909 18 C -0.106 4.106 19 C -0.154 4.154 20 C 0.068 3.932 21 N -0.677 5.677 22 C 0.103 3.897 23 H 0.087 0.913 24 C -0.078 4.078 25 C -0.127 4.127 26 C -0.121 4.121 27 H 0.056 0.944 28 H 0.039 0.961 29 H 0.046 0.954 30 H 0.251 0.749 31 H 0.013 0.987 32 H 0.093 0.907 33 H 0.037 0.963 34 H 0.032 0.968 35 H 0.067 0.933 36 H 0.050 0.950 37 H 0.078 0.922 38 H 0.092 0.908 39 H 0.075 0.925 40 H 0.345 0.655 41 H 0.048 0.952 42 H 0.071 0.929 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.066 0.934 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.484 5.975 19.806 20.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.079 3.921 3 H 0.002 0.998 4 C -0.613 4.613 5 H 0.045 0.955 6 C -0.223 4.223 7 N -0.586 5.586 8 Si 0.913 3.087 9 H -0.187 1.187 10 H -0.186 1.186 11 H -0.219 1.219 12 N -0.240 5.240 13 C -0.118 4.118 14 C -0.049 4.049 15 H 0.106 0.894 16 C -0.189 4.189 17 H 0.109 0.891 18 C -0.144 4.144 19 C -0.193 4.193 20 C -0.061 4.061 21 N -0.310 5.310 22 C -0.008 4.008 23 H 0.105 0.895 24 C -0.079 4.079 25 C -0.184 4.184 26 C -0.178 4.178 27 H 0.075 0.925 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.031 0.969 32 H 0.111 0.889 33 H 0.056 0.944 34 H 0.051 0.949 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.097 0.903 38 H 0.111 0.889 39 H 0.093 0.907 40 H 0.169 0.831 41 H 0.067 0.933 42 H 0.090 0.910 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.085 0.915 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.988 6.548 19.305 20.603 hybrid contribution 1.166 -0.642 -0.889 1.600 sum -1.822 5.907 18.416 19.426 Atomic orbital electron populations 1.22048 0.97099 1.00844 0.99416 1.19503 0.92473 0.91401 0.88749 0.99837 1.22264 1.37754 1.08570 0.92666 0.95481 1.27017 0.97003 1.06328 0.91954 1.70929 1.39808 1.16464 1.31380 0.83434 0.76971 0.72268 0.76060 1.18714 1.18650 1.21895 1.61832 1.09798 1.51030 1.01347 1.22602 0.88328 0.99016 1.01838 1.23598 0.97775 0.94298 0.89228 0.89351 1.23162 1.00847 0.95674 0.99210 0.89064 1.20993 0.98915 0.95134 0.99381 1.22174 0.96828 1.01582 0.98696 1.21904 1.03240 0.87585 0.93375 1.59846 1.05163 1.04864 1.61095 1.21974 0.93965 0.92960 0.91949 0.89494 1.22281 0.97064 0.94557 0.94035 1.21611 0.94630 1.00857 1.01316 1.21633 0.97196 0.97094 1.01912 0.92514 0.94200 0.93525 0.94001 0.96881 0.88915 0.94412 0.94916 0.91393 0.93130 0.90313 0.88946 0.90666 0.83134 0.93312 0.90988 0.92024 0.92303 0.91467 0.92684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.82 8.75 71.98 0.63 -5.19 16 2 C 0.19 8.81 1.63 44.17 0.07 8.89 16 3 H -0.02 -0.78 6.61 -2.39 -0.02 -0.80 16 4 C -0.57 -32.89 8.09 25.60 0.21 -32.68 16 5 H 0.03 1.72 6.87 -2.91 -0.02 1.70 16 6 C -0.03 -1.54 5.43 84.65 0.46 -1.08 16 7 N -0.95 -60.57 13.70 21.45 0.29 -60.28 16 8 Si 1.09 51.80 25.34 68.60 1.74 53.54 16 9 H -0.26 -11.47 6.79 99.48 0.68 -10.79 16 10 H -0.26 -11.44 6.36 99.48 0.63 -10.81 16 11 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 12 N -0.52 -20.85 4.00 -873.45 -3.50 -24.35 16 13 C 0.03 1.17 7.36 127.69 0.94 2.11 16 14 C 0.06 1.89 2.62 45.38 0.12 2.01 16 15 H 0.09 2.87 4.43 -2.39 -0.01 2.86 16 16 C -0.17 -4.61 2.49 -11.34 -0.03 -4.64 16 17 H 0.09 2.67 4.90 -2.39 -0.01 2.66 16 18 C -0.11 -2.84 5.67 30.06 0.17 -2.67 16 19 C -0.15 -3.36 5.89 30.55 0.18 -3.18 16 20 C 0.07 1.25 6.56 86.46 0.57 1.82 16 21 N -0.68 -13.90 6.49 -494.46 -3.21 -17.11 16 22 C 0.10 2.39 4.02 45.23 0.18 2.57 16 23 H 0.09 1.97 8.08 -2.39 -0.02 1.95 16 24 C -0.08 -1.99 1.32 -51.51 -0.07 -2.06 16 25 C -0.13 -2.86 8.63 71.98 0.62 -2.24 16 26 C -0.12 -3.09 7.37 71.98 0.53 -2.56 16 27 H 0.06 2.03 5.93 -2.39 -0.01 2.02 16 28 H 0.04 1.71 4.44 -2.38 -0.01 1.70 16 29 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.25 16.29 8.72 -92.71 -0.81 15.48 16 31 H 0.01 0.50 6.57 -2.39 -0.02 0.48 16 32 H 0.09 3.01 3.91 -2.39 -0.01 3.00 16 33 H 0.04 1.73 6.20 -2.39 -0.01 1.72 16 34 H 0.03 1.06 8.13 -2.39 -0.02 1.04 16 35 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.05 1.22 7.02 -2.39 -0.02 1.20 16 37 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 38 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.07 1.35 8.13 -2.39 -0.02 1.33 16 40 H 0.35 6.95 5.57 -89.70 -0.50 6.45 16 41 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.06 1.26 5.76 -2.39 -0.01 1.25 16 44 H 0.06 1.42 5.90 -2.39 -0.01 1.41 16 45 H 0.07 1.44 8.07 -2.39 -0.02 1.43 16 46 H 0.05 1.70 6.76 -2.39 -0.02 1.69 16 Total: -1.00 -64.52 316.46 0.24 -64.29 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: 0.33 Total: 22.82 kcal Atomic # 6 Polarization: -43.49 SS G_CDS: 4.58 Total: -38.91 kcal Atomic # 7 Polarization: -95.32 SS G_CDS: -6.41 Total: -101.74 kcal Atomic # 14 Polarization: 51.80 SS G_CDS: 1.74 Total: 53.54 kcal Total: -64.52 0.24 -64.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693698315.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.577 kcal (2) G-P(sol) polarization free energy of solvation -64.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds