Wall clock time and date at job start Mon Mar 30 2020 05:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 119.99882 * 3 2 1 6 6 H 1.48500 * 109.47000 * 239.99975 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 S 1.76203 * 120.00108 * 0.02562 * 7 2 1 10 10 O 1.42098 * 106.39933 * 293.53688 * 9 7 2 11 11 O 1.42094 * 106.40234 * 66.46173 * 9 7 2 12 12 N 1.65606 * 107.21543 * 180.02562 * 9 7 2 13 13 C 1.46496 * 120.00080 * 65.00058 * 12 9 7 14 14 C 1.52995 * 109.47145 * 164.99639 * 13 12 9 15 15 O 1.42902 * 109.60185 * 300.32301 * 14 13 12 16 16 C 1.52942 * 109.60748 * 179.97438 * 14 13 12 17 17 C 1.53701 * 112.49715 * 209.97177 * 16 14 13 18 18 S 1.83398 * 104.96547 * 2.82135 * 17 16 14 19 19 C 1.55155 * 109.60454 * 60.46340 * 14 13 12 20 20 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 21 21 H 0.97002 * 119.99715 * 244.99994 * 12 9 7 22 22 H 1.08996 * 109.47349 * 284.99803 * 13 12 9 23 23 H 1.09009 * 109.47157 * 44.99579 * 13 12 9 24 24 H 0.96698 * 113.99688 * 59.29739 * 15 14 13 25 25 H 1.09004 * 108.88518 * 330.76699 * 16 14 13 26 26 H 1.09006 * 108.88785 * 89.31452 * 16 14 13 27 27 H 1.08996 * 110.34608 * 121.69468 * 17 16 14 28 28 H 1.09000 * 110.34196 * 243.85118 * 17 16 14 29 29 H 1.09001 * 111.13188 * 279.28196 * 19 14 13 30 30 H 1.09004 * 111.12961 * 43.45749 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1027 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 16 1.1236 -2.7200 0.0005 10 8 0.4511 -2.7950 1.2501 11 8 0.4520 -2.7956 -1.2494 12 7 2.2485 -3.9353 0.0019 13 6 3.1387 -4.1082 1.1525 14 6 3.8041 -5.4840 1.0804 15 8 2.8017 -6.5024 1.0904 16 6 4.7348 -5.6675 2.2801 17 6 5.9294 -6.5812 1.9633 18 16 5.7480 -6.9992 0.1868 19 6 4.6370 -5.5916 -0.2242 20 1 -0.4850 -0.8401 -0.0004 21 1 2.3180 -4.5328 -0.7591 22 1 3.9047 -3.3329 1.1390 23 1 2.5608 -4.0319 2.0737 24 1 2.1728 -6.4424 0.3584 25 1 5.1092 -4.6914 2.5887 26 1 4.1681 -6.1035 3.1028 27 1 6.8669 -6.0522 2.1341 28 1 5.8880 -7.4840 2.5726 29 1 4.0018 -5.8289 -1.0776 30 1 5.2072 -4.6799 -0.4027 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702309073.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:05 Heat of formation + Delta-G solvation = -178.587251 kcal Electronic energy + Delta-G solvation = -17028.526187 eV Core-core repulsion = 14074.775921 eV Total energy + Delta-G solvation = -2953.750265 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 267.043 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.05023 -37.70991 -36.57529 -35.55347 -35.15216 -34.55645 -30.25758 -27.86971 -27.71127 -24.47892 -21.60335 -21.26829 -20.08544 -18.81385 -17.88835 -17.41465 -17.04001 -16.83374 -16.08351 -15.94407 -15.67229 -15.42204 -14.94878 -14.66353 -14.27177 -13.57893 -13.25713 -13.10140 -13.01451 -12.96484 -12.95399 -12.74630 -12.73207 -12.49091 -11.97626 -11.93866 -11.47649 -11.18448 -10.91032 -10.79903 -10.24821 -9.39980 -8.70325 -7.63433 0.10207 0.82144 1.31081 1.48118 1.51507 1.76690 2.33884 2.59208 2.62359 3.08384 3.28987 3.39091 3.47859 3.74182 4.03769 4.07362 4.19935 4.36151 4.50653 4.56435 4.59184 4.76116 4.81776 4.92814 5.03488 5.40056 5.80812 6.11447 6.49147 6.56520 7.95695 Molecular weight = 267.04amu Principal moments of inertia in cm(-1) A = 0.030830 B = 0.005816 C = 0.005381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.981579 B = 4813.536699 C = 5201.982924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.034 3.966 3 Si 1.119 2.881 4 H -0.273 1.273 5 H -0.247 1.247 6 H -0.251 1.251 7 C -1.098 5.098 8 H 0.127 0.873 9 S 2.703 3.297 10 O -1.043 7.043 11 O -1.045 7.045 12 N -1.111 6.111 13 C 0.101 3.899 14 C 0.133 3.867 15 O -0.553 6.553 16 C -0.122 4.122 17 C -0.053 4.053 18 S -0.329 6.329 19 C -0.092 4.092 20 H 0.256 0.744 21 H 0.415 0.585 22 H 0.092 0.908 23 H 0.075 0.925 24 H 0.384 0.616 25 H 0.112 0.888 26 H 0.096 0.904 27 H 0.114 0.886 28 H 0.108 0.892 29 H 0.113 0.887 30 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.002 -8.792 3.229 16.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.176 4.176 3 Si 0.933 3.067 4 H -0.197 1.197 5 H -0.171 1.171 6 H -0.175 1.175 7 C -1.232 5.232 8 H 0.145 0.855 9 S 2.805 3.195 10 O -1.033 7.033 11 O -1.035 7.035 12 N -0.872 5.872 13 C -0.028 4.028 14 C 0.089 3.911 15 O -0.360 6.360 16 C -0.161 4.161 17 C -0.201 4.201 18 S -0.103 6.103 19 C -0.240 4.240 20 H 0.067 0.933 21 H 0.251 0.749 22 H 0.110 0.890 23 H 0.093 0.907 24 H 0.234 0.766 25 H 0.130 0.870 26 H 0.114 0.886 27 H 0.132 0.868 28 H 0.126 0.874 29 H 0.131 0.869 30 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 13.621 -8.394 3.264 16.329 hybrid contribution -0.592 -0.724 -0.369 1.005 sum 13.029 -9.117 2.895 16.164 Atomic orbital electron populations 1.71011 1.08640 1.30783 1.40417 1.27768 0.95050 1.08512 0.86312 0.83062 0.74812 0.68975 0.79843 1.19734 1.17103 1.17516 1.31821 1.09401 1.13186 1.68800 0.85509 1.00306 0.72989 0.74680 0.71569 1.93379 1.74617 1.88341 1.46935 1.93384 1.75007 1.88528 1.46587 1.55078 1.54893 1.49597 1.27671 1.22047 0.94088 0.98118 0.88500 1.22256 0.88647 0.86112 0.94127 1.86567 1.43360 1.51998 1.54119 1.21974 0.94381 1.02609 0.97147 1.23981 1.01348 1.03176 0.91580 1.87924 1.65827 1.41733 1.14773 1.25190 0.99146 0.98877 1.00810 0.93279 0.74943 0.88965 0.90650 0.76650 0.86960 0.88586 0.86799 0.87385 0.86873 0.86681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -53.38 13.66 21.45 0.29 -53.09 16 2 C 0.03 1.86 5.46 84.65 0.46 2.32 16 3 Si 1.12 44.60 29.90 68.60 2.05 46.66 16 4 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 5 H -0.25 -8.69 7.11 99.48 0.71 -7.99 16 6 H -0.25 -8.98 7.11 99.48 0.71 -8.27 16 7 C -1.10 -56.54 9.72 67.73 0.66 -55.88 16 8 H 0.13 5.70 7.81 -2.91 -0.02 5.68 16 9 S 2.70 132.95 4.38 -56.49 -0.25 132.70 16 10 O -1.04 -57.91 17.11 -128.00 -2.19 -60.10 16 11 O -1.04 -58.02 17.64 -128.00 -2.26 -60.28 16 12 N -1.11 -37.27 5.43 -187.50 -1.02 -38.29 16 13 C 0.10 2.81 5.18 86.38 0.45 3.26 16 14 C 0.13 2.98 0.80 -10.08 -0.01 2.98 16 15 O -0.55 -13.98 12.83 -148.98 -1.91 -15.89 16 16 C -0.12 -2.16 5.57 30.81 0.17 -1.99 16 17 C -0.05 -0.85 7.38 72.22 0.53 -0.32 16 18 S -0.33 -7.31 23.13 -56.49 -1.31 -8.61 16 19 C -0.09 -1.90 5.91 72.72 0.43 -1.47 16 20 H 0.26 16.27 6.52 -92.70 -0.60 15.67 16 21 H 0.42 11.48 7.13 -96.74 -0.69 10.79 16 22 H 0.09 2.26 8.10 -2.39 -0.02 2.25 16 23 H 0.08 2.37 7.75 -2.38 -0.02 2.35 16 24 H 0.38 8.47 8.16 -74.06 -0.60 7.87 16 25 H 0.11 1.55 7.78 -2.38 -0.02 1.53 16 26 H 0.10 1.74 8.06 -2.38 -0.02 1.72 16 27 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.11 1.57 8.14 -2.39 -0.02 1.56 16 29 H 0.11 2.21 7.53 -2.39 -0.02 2.20 16 30 H 0.11 2.15 8.11 -2.39 -0.02 2.13 16 Total: -1.00 -75.49 278.66 -3.85 -79.33 By element: Atomic # 1 Polarization: 28.63 SS G_CDS: 0.05 Total: 28.68 kcal Atomic # 6 Polarization: -53.81 SS G_CDS: 2.69 Total: -51.12 kcal Atomic # 7 Polarization: -90.65 SS G_CDS: -0.73 Total: -91.38 kcal Atomic # 8 Polarization: -129.91 SS G_CDS: -6.36 Total: -136.26 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.05 Total: 46.66 kcal Atomic # 16 Polarization: 125.65 SS G_CDS: -1.55 Total: 124.09 kcal Total: -75.49 -3.85 -79.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702309073.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.253 kcal (2) G-P(sol) polarization free energy of solvation -75.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds