Wall clock time and date at job start Mon Mar 30 2020 05:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48498 * 109.47200 * 239.72287 * 3 2 1 5 5 H 1.48498 * 109.46671 * 359.72211 * 3 2 1 6 6 H 1.48499 * 109.47156 * 119.72301 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 S 1.76192 * 120.00029 * 0.02562 * 7 2 1 10 10 O 1.42100 * 106.40434 * 293.54174 * 9 7 2 11 11 O 1.42104 * 106.40118 * 66.45810 * 9 7 2 12 12 N 1.65602 * 107.21927 * 179.97438 * 9 7 2 13 13 C 1.46499 * 119.99866 * 65.00268 * 12 9 7 14 14 C 1.53003 * 109.47183 * 165.00244 * 13 12 9 15 15 O 1.42900 * 109.60689 * 63.87980 * 14 13 12 16 16 C 1.53853 * 109.61002 * 184.04195 * 14 13 12 17 17 C 1.55131 * 106.90076 * 167.17245 * 16 14 13 18 18 S 1.83462 * 102.20372 * 317.88538 * 17 16 14 19 19 C 1.54274 * 109.60640 * 303.54365 * 14 13 12 20 20 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 21 21 H 0.97002 * 119.99900 * 244.99668 * 12 9 7 22 22 H 1.09001 * 109.46517 * 284.99964 * 13 12 9 23 23 H 1.08998 * 109.47064 * 44.99602 * 13 12 9 24 24 H 0.96703 * 114.00169 * 300.70548 * 15 14 13 25 25 H 1.08996 * 109.97521 * 286.53488 * 16 14 13 26 26 H 1.09004 * 109.97264 * 47.81324 * 16 14 13 27 27 H 1.08995 * 110.85946 * 199.70559 * 17 16 14 28 28 H 1.08996 * 111.03306 * 76.13909 * 17 16 14 29 29 H 1.09004 * 110.40001 * 330.91816 * 19 14 13 30 30 H 1.09003 * 110.40391 * 93.33504 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1081 1.6935 -1.2091 5 1 1.2842 2.7464 -0.0068 6 1 3.0979 1.6993 1.2159 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 16 1.1236 -2.7200 0.0125 10 8 0.4509 -2.7895 1.2622 11 8 0.4519 -2.8010 -1.2372 12 7 2.2483 -3.9354 0.0178 13 6 3.1393 -4.1038 1.1684 14 6 3.8047 -5.4799 1.1011 15 8 4.6342 -5.5553 -0.0600 16 6 4.6625 -5.7008 2.3591 17 6 5.0351 -7.2064 2.3923 18 16 3.4568 -8.0072 1.9092 19 6 2.7212 -6.5762 1.0354 20 1 -0.4850 0.8401 -0.0041 21 1 2.3171 -4.5359 -0.7409 22 1 3.9054 -3.3286 1.1512 23 1 2.5622 -4.0239 2.0896 24 1 4.1601 -5.4181 -0.8917 25 1 5.5666 -5.0946 2.3045 26 1 4.0914 -5.4389 3.2499 27 1 5.3333 -7.5104 3.3956 28 1 5.8208 -7.4308 1.6710 29 1 1.8151 -6.2458 1.5433 30 1 2.5043 -6.8344 -0.0011 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702309075.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:07 Heat of formation + Delta-G solvation = -178.642048 kcal Electronic energy + Delta-G solvation = -16989.565961 eV Core-core repulsion = 14035.813319 eV Total energy + Delta-G solvation = -2953.752641 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 267.043 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.04021 -37.41121 -36.15471 -35.36762 -35.05046 -34.41782 -30.24894 -28.26398 -27.73343 -24.28506 -21.51141 -21.05650 -19.49392 -18.66399 -17.93796 -17.55838 -17.10250 -16.73570 -16.04278 -15.70927 -15.58691 -15.45551 -14.74159 -14.42536 -13.97905 -13.62894 -13.35302 -13.23432 -12.99458 -12.92079 -12.80637 -12.51545 -12.47566 -12.43318 -12.32542 -11.91485 -11.49797 -11.22913 -11.04805 -10.79126 -10.25786 -8.75425 -8.72576 -7.48164 0.31431 0.80982 1.35777 1.37107 1.37396 1.50240 2.20892 2.58823 2.90842 3.08904 3.38387 3.47148 3.68911 3.76295 4.05164 4.20401 4.39418 4.44078 4.57175 4.61427 4.71048 4.74531 4.90528 4.98872 5.07932 5.29355 5.89683 6.24764 6.60419 6.79295 8.20666 Molecular weight = 267.04amu Principal moments of inertia in cm(-1) A = 0.035692 B = 0.005650 C = 0.005264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.305624 B = 4954.416887 C = 5317.704429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.070 3.930 3 Si 0.989 3.011 4 H -0.252 1.252 5 H -0.267 1.267 6 H -0.249 1.249 7 C -1.040 5.040 8 H 0.122 0.878 9 S 2.725 3.275 10 O -1.040 7.040 11 O -1.044 7.044 12 N -1.119 6.119 13 C 0.101 3.899 14 C 0.133 3.867 15 O -0.551 6.551 16 C -0.117 4.117 17 C -0.050 4.050 18 S -0.332 6.332 19 C -0.097 4.097 20 H 0.298 0.702 21 H 0.413 0.587 22 H 0.085 0.915 23 H 0.081 0.919 24 H 0.389 0.611 25 H 0.114 0.886 26 H 0.106 0.894 27 H 0.125 0.875 28 H 0.099 0.901 29 H 0.095 0.905 30 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.160 -8.908 3.623 15.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.143 4.143 3 Si 0.807 3.193 4 H -0.176 1.176 5 H -0.191 1.191 6 H -0.172 1.172 7 C -1.173 5.173 8 H 0.141 0.859 9 S 2.826 3.174 10 O -1.030 7.030 11 O -1.034 7.034 12 N -0.879 5.879 13 C -0.027 4.027 14 C 0.089 3.911 15 O -0.358 6.358 16 C -0.155 4.155 17 C -0.198 4.198 18 S -0.106 6.106 19 C -0.246 4.246 20 H 0.109 0.891 21 H 0.248 0.752 22 H 0.103 0.897 23 H 0.099 0.901 24 H 0.240 0.760 25 H 0.132 0.868 26 H 0.124 0.876 27 H 0.143 0.857 28 H 0.117 0.883 29 H 0.114 0.886 30 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 11.057 -10.108 4.433 15.623 hybrid contribution 0.239 1.980 -1.156 2.306 sum 11.296 -8.128 3.276 14.297 Atomic orbital electron populations 1.69985 1.08778 1.32386 1.41412 1.26000 0.95331 1.05397 0.87598 0.85172 0.78745 0.74629 0.80724 1.17567 1.19124 1.17235 1.30881 1.07270 1.12506 1.66666 0.85946 0.99759 0.72405 0.73817 0.71440 1.93314 1.74329 1.88190 1.47177 1.93323 1.74788 1.88333 1.46952 1.55316 1.55094 1.49779 1.27745 1.21972 0.93745 0.97945 0.89019 1.22193 0.88921 0.91363 0.88629 1.86517 1.38387 1.94613 1.16320 1.22590 1.01617 0.96014 0.95310 1.24264 0.94465 0.94999 1.06071 1.87631 1.23975 1.25280 1.73743 1.24807 1.01356 0.94196 1.04226 0.89146 0.75249 0.89663 0.90113 0.76048 0.86786 0.87601 0.85707 0.88270 0.88627 0.87506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.14 13.19 21.45 0.28 -51.85 16 2 C 0.07 3.75 5.46 84.66 0.46 4.21 16 3 Si 0.99 39.85 29.54 68.60 2.03 41.87 16 4 H -0.25 -9.57 7.11 99.48 0.71 -8.86 16 5 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 6 H -0.25 -9.33 7.11 99.48 0.71 -8.62 16 7 C -1.04 -54.21 9.72 67.74 0.66 -53.55 16 8 H 0.12 5.64 7.81 -2.91 -0.02 5.62 16 9 S 2.73 137.28 5.02 -56.49 -0.28 137.00 16 10 O -1.04 -58.94 17.49 -128.00 -2.24 -61.18 16 11 O -1.04 -59.71 18.02 -128.00 -2.31 -62.02 16 12 N -1.12 -38.41 5.49 -187.49 -1.03 -39.44 16 13 C 0.10 2.90 5.24 86.38 0.45 3.36 16 14 C 0.13 3.01 0.83 -10.07 -0.01 3.00 16 15 O -0.55 -11.95 12.86 -148.98 -1.92 -13.87 16 16 C -0.12 -2.10 5.46 31.61 0.17 -1.93 16 17 C -0.05 -0.87 7.27 72.71 0.53 -0.34 16 18 S -0.33 -7.95 23.26 -56.49 -1.31 -9.26 16 19 C -0.10 -2.36 5.85 72.41 0.42 -1.94 16 20 H 0.30 15.71 8.31 -92.71 -0.77 14.94 16 21 H 0.41 11.62 7.35 -96.74 -0.71 10.90 16 22 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 23 H 0.08 2.47 7.75 -2.39 -0.02 2.45 16 24 H 0.39 6.88 7.81 -74.06 -0.58 6.30 16 25 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.11 1.77 8.11 -2.39 -0.02 1.75 16 27 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.10 2.57 7.89 -2.38 -0.02 2.55 16 30 H 0.11 2.39 8.04 -2.39 -0.02 2.37 16 Total: -1.00 -74.58 281.66 -4.20 -78.79 By element: Atomic # 1 Polarization: 27.27 SS G_CDS: -0.12 Total: 27.15 kcal Atomic # 6 Polarization: -49.88 SS G_CDS: 2.69 Total: -47.19 kcal Atomic # 7 Polarization: -90.55 SS G_CDS: -0.75 Total: -91.30 kcal Atomic # 8 Polarization: -130.60 SS G_CDS: -6.46 Total: -137.06 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 2.03 Total: 41.87 kcal Atomic # 16 Polarization: 129.34 SS G_CDS: -1.60 Total: 127.74 kcal Total: -74.58 -4.20 -78.79 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702309075.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.855 kcal (2) G-P(sol) polarization free energy of solvation -74.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds