Wall clock time and date at job start Mon Mar 30 2020 04:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47372 * 2 1 4 4 C 1.53003 * 109.47054 * 240.00303 * 2 1 3 5 5 C 1.50700 * 109.47096 * 175.00050 * 4 2 1 6 6 H 1.08000 * 119.99933 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99983 * 180.02562 * 5 4 2 8 8 N 1.31519 * 120.00177 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00423 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46539 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47290 * 119.99611 * 9 7 5 12 12 H 1.48500 * 109.47391 * 240.00322 * 9 7 5 13 13 N 1.46896 * 109.47170 * 120.00598 * 2 1 3 14 14 C 1.48794 * 111.12968 * 47.88400 * 13 2 1 15 15 C 1.54291 * 104.75227 * 200.76742 * 14 13 2 16 16 C 1.52998 * 112.37699 * 146.48663 * 15 14 13 17 17 C 1.54289 * 109.32469 * 271.98672 * 15 14 13 18 18 N 1.48519 * 104.71154 * 135.93779 * 17 15 14 19 19 C 1.46897 * 110.99746 * 200.72662 * 18 17 15 20 20 C 1.50109 * 104.26160 * 320.09222 * 18 17 15 21 21 C 1.54284 * 103.95067 * 39.89954 * 20 18 17 22 22 C 1.52999 * 112.37974 * 98.67965 * 21 20 18 23 23 C 1.48514 * 111.00111 * 292.58076 * 13 2 1 24 24 H 1.08997 * 109.46937 * 292.46682 * 1 2 3 25 25 H 1.08999 * 109.47111 * 52.46268 * 1 2 3 26 26 H 1.09005 * 109.47113 * 172.46660 * 1 2 3 27 27 H 1.09000 * 109.47495 * 295.00424 * 4 2 1 28 28 H 1.09007 * 109.47089 * 55.00041 * 4 2 1 29 29 H 0.96997 * 120.00073 * 179.97438 * 8 7 5 30 30 H 1.09005 * 110.36962 * 81.95100 * 14 13 2 31 31 H 1.08998 * 110.47130 * 319.63793 * 14 13 2 32 32 H 1.09003 * 109.47132 * 301.90567 * 16 15 14 33 33 H 1.08998 * 109.47874 * 61.91086 * 16 15 14 34 34 H 1.09005 * 109.46966 * 181.91213 * 16 15 14 35 35 H 1.08991 * 110.38679 * 254.74787 * 17 15 14 36 36 H 1.09003 * 110.38819 * 17.12955 * 17 15 14 37 37 H 1.09001 * 109.47683 * 59.99740 * 19 18 17 38 38 H 1.08994 * 109.47366 * 180.02562 * 19 18 17 39 39 H 1.08998 * 109.47200 * 300.00295 * 19 18 17 40 40 H 1.09000 * 111.15020 * 281.14365 * 20 18 17 41 41 H 1.09008 * 110.35743 * 158.26527 * 20 18 17 42 42 H 1.09005 * 109.46399 * 182.13583 * 22 21 20 43 43 H 1.08994 * 109.47097 * 302.13461 * 22 21 20 44 44 H 1.08994 * 109.47366 * 62.13804 * 22 21 20 45 45 H 1.08999 * 110.38603 * 40.46738 * 23 13 2 46 46 H 1.08999 * 110.39031 * 278.20265 * 23 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6149 -1.3128 6 1 4.0789 -0.0862 -0.5392 7 6 4.2303 -1.1925 -2.3584 8 7 3.5763 -1.8368 -3.3002 9 14 6.0921 -1.0614 -2.4369 10 1 6.5837 -0.2920 -1.2657 11 1 6.6853 -2.4226 -2.4199 12 1 6.4871 -0.3647 -3.6874 13 7 2.0196 -0.6926 1.1993 14 6 1.3209 -1.9922 1.3911 15 6 1.5182 -2.3278 2.8841 16 6 0.3200 -3.0720 3.4770 17 6 2.8392 -3.1047 3.0625 18 7 3.4812 -2.4889 4.2518 19 6 4.9250 -2.7591 4.2696 20 6 3.2152 -1.0197 4.0964 21 6 1.7660 -0.9576 3.5707 22 6 0.7551 -0.6679 4.6820 23 6 1.6951 0.0763 2.4278 24 1 -0.3633 0.3927 0.9496 25 1 -0.3633 0.6261 -0.8149 26 1 -0.3633 -1.0188 -0.1347 27 1 1.7516 -1.7714 -1.2058 28 1 1.6053 -0.2616 -2.1371 29 1 4.0606 -2.2429 -4.0360 30 1 1.7732 -2.7621 0.7658 31 1 0.2601 -1.8922 1.1613 32 1 -0.5792 -2.4680 3.3555 33 1 0.1913 -4.0233 2.9608 34 1 0.4944 -3.2547 4.5374 35 1 2.6373 -4.1603 3.2438 36 1 3.4725 -2.9838 2.1837 37 1 5.3833 -2.3452 3.3714 38 1 5.3702 -2.2973 5.1508 39 1 5.0928 -3.8356 4.2999 40 1 3.8997 -0.5700 3.3772 41 1 3.2914 -0.5165 5.0604 42 1 -0.2526 -0.6721 4.2665 43 1 0.8334 -1.4342 5.4532 44 1 0.9643 0.3089 5.1179 45 1 0.6921 0.4974 2.3583 46 1 2.4282 0.8674 2.5854 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706259640.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:10 Heat of formation + Delta-G solvation = 9.767642 kcal Electronic energy + Delta-G solvation = -22424.679899 eV Core-core repulsion = 19541.951533 eV Total energy + Delta-G solvation = -2882.728366 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.55508 -36.88953 -34.16601 -32.50828 -31.90587 -30.18737 -27.61534 -27.22698 -25.77463 -25.61184 -24.80668 -22.99594 -21.53435 -20.49084 -18.87592 -17.87341 -16.14694 -15.75555 -15.07241 -14.83092 -14.47740 -14.30777 -14.13723 -13.55021 -13.45366 -13.14805 -12.99230 -12.77200 -12.63271 -12.06024 -11.90670 -11.75683 -11.71193 -11.43506 -11.27915 -11.18647 -10.91920 -10.81092 -10.73144 -10.57769 -10.38794 -10.26986 -10.11072 -10.00929 -9.85380 -9.18031 -8.98459 -8.28020 -8.26927 -7.58146 -5.89306 -3.86883 3.36337 3.43929 3.49055 4.24799 4.54641 4.58650 4.59136 4.77738 5.03730 5.33048 5.38259 5.45469 5.48189 5.49697 5.54117 5.66860 5.71827 5.72486 5.79758 5.84958 5.91390 5.95581 6.01257 6.01579 6.02742 6.06078 6.09497 6.11936 6.19991 6.31433 6.34432 6.39482 6.43594 6.57824 6.65818 6.71867 6.97823 7.01246 7.20329 7.48376 7.59360 7.82717 8.00571 8.12057 8.58261 9.19122 9.74682 11.22785 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.018210 B = 0.007053 C = 0.005843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.274202 B = 3969.053202 C = 4790.530039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.076 3.924 3 H 0.068 0.932 4 C 0.034 3.966 5 C -0.488 4.488 6 H 0.059 0.941 7 C 0.050 3.950 8 N -0.904 5.904 9 Si 0.887 3.113 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.287 1.287 13 N -0.477 5.477 14 C 0.039 3.961 15 C -0.061 4.061 16 C -0.126 4.126 17 C 0.046 3.954 18 N -0.515 5.515 19 C 0.012 3.988 20 C 0.046 3.954 21 C -0.062 4.062 22 C -0.125 4.125 23 C 0.032 3.968 24 H 0.042 0.958 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.017 0.983 28 H 0.017 0.983 29 H 0.256 0.744 30 H 0.083 0.917 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.033 0.967 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.071 0.929 42 H 0.053 0.947 43 H 0.062 0.938 44 H 0.051 0.949 45 H 0.040 0.960 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.289 0.000 15.406 16.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.033 4.033 3 H 0.087 0.913 4 C -0.003 4.003 5 C -0.526 4.526 6 H 0.077 0.923 7 C -0.149 4.149 8 N -0.545 5.545 9 Si 0.716 3.284 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.214 1.214 13 N -0.200 5.200 14 C -0.089 4.089 15 C -0.062 4.062 16 C -0.183 4.183 17 C -0.082 4.082 18 N -0.238 5.238 19 C -0.137 4.137 20 C -0.081 4.081 21 C -0.063 4.063 22 C -0.183 4.183 23 C -0.096 4.096 24 H 0.061 0.939 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.035 0.965 28 H 0.035 0.965 29 H 0.066 0.934 30 H 0.101 0.899 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.052 0.948 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.072 0.928 43 H 0.081 0.919 44 H 0.070 0.930 45 H 0.058 0.942 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.851 -0.371 15.660 16.399 hybrid contribution 0.630 0.450 -0.956 1.230 sum -4.221 0.079 14.705 15.298 Atomic orbital electron populations 1.22527 0.99742 1.01584 1.00477 1.22030 0.90181 0.98505 0.92549 0.91343 1.19119 0.96284 0.95248 0.89686 1.21192 0.91838 1.32792 1.06807 0.92270 1.24997 0.97907 0.95933 0.96034 1.69973 1.35064 1.37071 1.12355 0.86608 0.86594 0.77545 0.77665 1.19871 1.21336 1.21355 1.65667 1.51867 1.01946 1.00486 1.23265 0.97445 0.94199 0.93963 1.21960 0.94930 0.94238 0.95078 1.21675 0.96427 0.99444 1.00766 1.23174 0.94656 0.98045 0.92362 1.65881 1.10903 1.08290 1.38735 1.22475 0.88991 1.01501 1.00772 1.23452 0.95498 0.89309 0.99880 1.21941 0.94893 0.94785 0.94658 1.21672 0.97903 1.01040 0.97643 1.23251 0.99298 0.96244 0.90855 0.93862 0.92656 0.92544 0.96485 0.96459 0.93393 0.89867 0.93484 0.92831 0.92808 0.92029 0.90974 0.92043 0.94833 0.91850 0.91768 0.92297 0.91055 0.92769 0.91925 0.93039 0.94155 0.90928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.16 8.16 37.16 0.30 -2.86 16 2 C 0.08 1.54 2.29 -67.72 -0.15 1.39 16 3 H 0.07 1.43 8.11 -51.93 -0.42 1.01 16 4 C 0.03 0.86 4.47 -27.88 -0.12 0.74 16 5 C -0.49 -13.72 8.84 -34.44 -0.30 -14.03 16 6 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 7 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 8 N -0.90 -27.37 13.29 55.43 0.74 -26.63 16 9 Si 0.89 22.21 29.54 -169.99 -5.02 17.19 16 10 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 13 N -0.48 -8.97 5.07 -221.98 -1.12 -10.10 16 14 C 0.04 0.68 4.41 -2.10 -0.01 0.67 16 15 C -0.06 -0.88 1.06 -151.97 -0.16 -1.04 16 16 C -0.13 -1.52 7.58 37.16 0.28 -1.23 16 17 C 0.05 0.69 5.58 -2.25 -0.01 0.68 16 18 N -0.51 -7.30 5.69 -237.00 -1.35 -8.65 16 19 C 0.01 0.15 9.54 60.06 0.57 0.73 16 20 C 0.05 0.65 5.65 -1.35 -0.01 0.64 16 21 C -0.06 -0.84 1.05 -151.97 -0.16 -1.00 16 22 C -0.13 -1.41 7.58 37.16 0.28 -1.13 16 23 C 0.03 0.50 5.16 -2.26 -0.01 0.49 16 24 H 0.04 0.66 6.12 -51.93 -0.32 0.34 16 25 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 26 H 0.06 0.97 6.39 -51.93 -0.33 0.64 16 27 H 0.02 0.46 7.16 -51.93 -0.37 0.09 16 28 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.08 1.64 7.31 -51.93 -0.38 1.26 16 31 H 0.05 0.78 5.23 -51.93 -0.27 0.51 16 32 H 0.05 0.61 7.16 -51.93 -0.37 0.24 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.71 7.21 -51.93 -0.37 0.33 16 35 H 0.07 1.01 7.90 -51.93 -0.41 0.60 16 36 H 0.06 1.10 7.45 -51.93 -0.39 0.72 16 37 H 0.03 0.48 8.00 -51.93 -0.42 0.07 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.95 7.40 -51.93 -0.38 0.56 16 41 H 0.07 0.90 7.90 -51.92 -0.41 0.49 16 42 H 0.05 0.59 7.13 -51.93 -0.37 0.22 16 43 H 0.06 0.69 7.23 -51.93 -0.38 0.32 16 44 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.04 0.60 5.83 -51.93 -0.30 0.30 16 46 H 0.07 1.13 7.73 -51.93 -0.40 0.73 16 LS Contribution 337.92 15.07 5.09 5.09 Total: -1.00 -29.64 337.92 -9.65 -39.29 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -8.38 Total: -1.59 kcal Atomic # 6 Polarization: -15.00 SS G_CDS: 0.40 Total: -14.60 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: -1.74 Total: -45.38 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.64 -9.65 -39.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706259640.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.053 kcal (2) G-P(sol) polarization free energy of solvation -29.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds