Wall clock time and date at job start Mon Mar 30 2020 04:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47372 * 2 1 4 4 C 1.53003 * 109.47054 * 240.00303 * 2 1 3 5 5 C 1.50700 * 109.47096 * 175.00050 * 4 2 1 6 6 H 1.08000 * 119.99933 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99983 * 180.02562 * 5 4 2 8 8 N 1.31519 * 120.00177 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00423 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46539 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47290 * 119.99611 * 9 7 5 12 12 H 1.48500 * 109.47391 * 240.00322 * 9 7 5 13 13 N 1.46896 * 109.47170 * 120.00598 * 2 1 3 14 14 C 1.48794 * 111.12968 * 47.88400 * 13 2 1 15 15 C 1.54291 * 104.75227 * 200.76742 * 14 13 2 16 16 C 1.52998 * 112.37699 * 146.48663 * 15 14 13 17 17 C 1.54289 * 109.32469 * 271.98672 * 15 14 13 18 18 N 1.48519 * 104.71154 * 135.93779 * 17 15 14 19 19 C 1.46897 * 110.99746 * 200.72662 * 18 17 15 20 20 C 1.50109 * 104.26160 * 320.09222 * 18 17 15 21 21 C 1.54284 * 103.95067 * 39.89954 * 20 18 17 22 22 C 1.52999 * 112.37974 * 98.67965 * 21 20 18 23 23 C 1.48514 * 111.00111 * 292.58076 * 13 2 1 24 24 H 1.08997 * 109.46937 * 292.46682 * 1 2 3 25 25 H 1.08999 * 109.47111 * 52.46268 * 1 2 3 26 26 H 1.09005 * 109.47113 * 172.46660 * 1 2 3 27 27 H 1.09000 * 109.47495 * 295.00424 * 4 2 1 28 28 H 1.09007 * 109.47089 * 55.00041 * 4 2 1 29 29 H 0.96997 * 120.00073 * 179.97438 * 8 7 5 30 30 H 1.09005 * 110.36962 * 81.95100 * 14 13 2 31 31 H 1.08998 * 110.47130 * 319.63793 * 14 13 2 32 32 H 1.09003 * 109.47132 * 301.90567 * 16 15 14 33 33 H 1.08998 * 109.47874 * 61.91086 * 16 15 14 34 34 H 1.09005 * 109.46966 * 181.91213 * 16 15 14 35 35 H 1.08991 * 110.38679 * 254.74787 * 17 15 14 36 36 H 1.09003 * 110.38819 * 17.12955 * 17 15 14 37 37 H 1.09001 * 109.47683 * 59.99740 * 19 18 17 38 38 H 1.08994 * 109.47366 * 180.02562 * 19 18 17 39 39 H 1.08998 * 109.47200 * 300.00295 * 19 18 17 40 40 H 1.09000 * 111.15020 * 281.14365 * 20 18 17 41 41 H 1.09008 * 110.35743 * 158.26527 * 20 18 17 42 42 H 1.09005 * 109.46399 * 182.13583 * 22 21 20 43 43 H 1.08994 * 109.47097 * 302.13461 * 22 21 20 44 44 H 1.08994 * 109.47366 * 62.13804 * 22 21 20 45 45 H 1.08999 * 110.38603 * 40.46738 * 23 13 2 46 46 H 1.08999 * 110.39031 * 278.20265 * 23 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6149 -1.3128 6 1 4.0789 -0.0862 -0.5392 7 6 4.2303 -1.1925 -2.3584 8 7 3.5763 -1.8368 -3.3002 9 14 6.0921 -1.0614 -2.4369 10 1 6.5837 -0.2920 -1.2657 11 1 6.6853 -2.4226 -2.4199 12 1 6.4871 -0.3647 -3.6874 13 7 2.0196 -0.6926 1.1993 14 6 1.3209 -1.9922 1.3911 15 6 1.5182 -2.3278 2.8841 16 6 0.3200 -3.0720 3.4770 17 6 2.8392 -3.1047 3.0625 18 7 3.4812 -2.4889 4.2518 19 6 4.9250 -2.7591 4.2696 20 6 3.2152 -1.0197 4.0964 21 6 1.7660 -0.9576 3.5707 22 6 0.7551 -0.6679 4.6820 23 6 1.6951 0.0763 2.4278 24 1 -0.3633 0.3927 0.9496 25 1 -0.3633 0.6261 -0.8149 26 1 -0.3633 -1.0188 -0.1347 27 1 1.7516 -1.7714 -1.2058 28 1 1.6053 -0.2616 -2.1371 29 1 4.0606 -2.2429 -4.0360 30 1 1.7732 -2.7621 0.7658 31 1 0.2601 -1.8922 1.1613 32 1 -0.5792 -2.4680 3.3555 33 1 0.1913 -4.0233 2.9608 34 1 0.4944 -3.2547 4.5374 35 1 2.6373 -4.1603 3.2438 36 1 3.4725 -2.9838 2.1837 37 1 5.3833 -2.3452 3.3714 38 1 5.3702 -2.2973 5.1508 39 1 5.0928 -3.8356 4.2999 40 1 3.8997 -0.5700 3.3772 41 1 3.2914 -0.5165 5.0604 42 1 -0.2526 -0.6721 4.2665 43 1 0.8334 -1.4342 5.4532 44 1 0.9643 0.3089 5.1179 45 1 0.6921 0.4974 2.3583 46 1 2.4282 0.8674 2.5854 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706259640.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:09 Heat of formation + Delta-G solvation = -10.395613 kcal Electronic energy + Delta-G solvation = -22425.554244 eV Core-core repulsion = 19541.951533 eV Total energy + Delta-G solvation = -2883.602711 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.78925 -38.32051 -35.60987 -34.45811 -33.04246 -31.71921 -29.27485 -28.51799 -26.92754 -26.78530 -26.18897 -24.86426 -22.90408 -21.69249 -20.42704 -19.11125 -18.36349 -17.08855 -16.52247 -16.26615 -16.00964 -15.62518 -15.47205 -15.03826 -14.50304 -14.47070 -14.20008 -14.05736 -13.95774 -13.67950 -13.54515 -13.23028 -12.99272 -12.72675 -12.64078 -12.58799 -12.44114 -12.29587 -12.22141 -12.07575 -11.93596 -11.60367 -11.44817 -11.22772 -11.16438 -11.09217 -11.02951 -10.52982 -9.48564 -9.02544 -8.14498 -6.19129 1.35193 1.36066 1.48856 2.42229 3.07684 3.15987 3.28641 3.44047 3.60914 3.86277 4.11165 4.25655 4.30024 4.32198 4.33674 4.44784 4.48766 4.51452 4.58634 4.67021 4.69002 4.72383 4.82144 4.87293 4.88637 4.96714 4.97919 5.00068 5.05725 5.10830 5.14478 5.19815 5.26765 5.31918 5.33584 5.40251 5.44398 5.58366 5.67847 5.83815 5.85151 6.04508 6.21948 6.29697 6.49823 6.94546 7.46538 8.97847 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.018210 B = 0.007053 C = 0.005843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.274202 B = 3969.053202 C = 4790.530039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.084 3.916 3 H 0.061 0.939 4 C 0.042 3.958 5 C -0.497 4.497 6 H 0.053 0.947 7 C -0.004 4.004 8 N -0.939 5.939 9 Si 0.953 3.047 10 H -0.268 1.268 11 H -0.283 1.283 12 H -0.278 1.278 13 N -0.504 5.504 14 C 0.043 3.957 15 C -0.056 4.056 16 C -0.119 4.119 17 C 0.047 3.953 18 N -0.509 5.509 19 C 0.012 3.988 20 C 0.046 3.954 21 C -0.055 4.055 22 C -0.118 4.118 23 C 0.035 3.965 24 H 0.071 0.929 25 H 0.058 0.942 26 H 0.052 0.948 27 H -0.009 1.009 28 H -0.009 1.009 29 H 0.259 0.741 30 H 0.044 0.956 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.021 0.979 37 H 0.011 0.989 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.031 0.969 41 H 0.093 0.907 42 H 0.063 0.937 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.055 0.945 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.858 0.509 18.023 18.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.025 4.025 3 H 0.079 0.921 4 C 0.005 3.995 5 C -0.536 4.536 6 H 0.071 0.929 7 C -0.200 4.200 8 N -0.581 5.581 9 Si 0.779 3.221 10 H -0.193 1.193 11 H -0.209 1.209 12 H -0.204 1.204 13 N -0.227 5.227 14 C -0.085 4.085 15 C -0.057 4.057 16 C -0.176 4.176 17 C -0.081 4.081 18 N -0.232 5.232 19 C -0.137 4.137 20 C -0.081 4.081 21 C -0.056 4.056 22 C -0.176 4.176 23 C -0.093 4.093 24 H 0.089 0.911 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.009 0.991 28 H 0.009 0.991 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.040 0.960 37 H 0.030 0.970 38 H 0.102 0.898 39 H 0.092 0.908 40 H 0.050 0.950 41 H 0.111 0.889 42 H 0.081 0.919 43 H 0.089 0.911 44 H 0.083 0.917 45 H 0.073 0.927 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.421 0.147 18.292 19.079 hybrid contribution 0.845 0.280 -1.795 2.004 sum -4.576 0.427 16.496 17.124 Atomic orbital electron populations 1.22379 0.96909 1.01706 1.02166 1.21707 0.92407 0.97175 0.91203 0.92068 1.18949 0.95072 0.94012 0.91504 1.21474 0.93355 1.32309 1.06442 0.92911 1.25825 1.02730 0.95666 0.95764 1.70093 1.36956 1.38040 1.13038 0.85570 0.80866 0.77664 0.77970 1.19263 1.20916 1.20429 1.65499 1.53011 1.02995 1.01230 1.23175 0.97159 0.92547 0.95602 1.21970 0.95578 0.95070 0.93121 1.21643 0.95447 0.99319 1.01233 1.23106 0.94701 0.99033 0.91307 1.65931 1.11441 1.08280 1.37500 1.22524 0.88326 1.02254 1.00593 1.23474 0.95255 0.89182 1.00238 1.21975 0.95487 0.93381 0.94792 1.21640 0.97239 1.02081 0.96601 1.23285 0.99867 0.96362 0.89812 0.91057 0.92295 0.92884 0.99112 0.99050 0.93225 0.93768 0.92622 0.91583 0.92687 0.90714 0.89940 0.96048 0.97050 0.89836 0.90808 0.95017 0.88888 0.91851 0.91126 0.91666 0.92688 0.91280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.76 8.16 71.98 0.59 -5.17 16 2 C 0.08 3.47 2.29 44.92 0.10 3.57 16 3 H 0.06 2.59 8.11 -2.39 -0.02 2.57 16 4 C 0.04 2.23 4.47 29.85 0.13 2.37 16 5 C -0.50 -29.02 8.84 25.60 0.23 -28.79 16 6 H 0.05 3.08 7.74 -2.91 -0.02 3.06 16 7 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 8 N -0.94 -58.66 13.29 21.45 0.28 -58.37 16 9 Si 0.95 46.58 29.54 68.60 2.03 48.60 16 10 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 12 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 13 N -0.50 -19.21 5.07 -856.21 -4.34 -23.55 16 14 C 0.04 1.51 4.41 86.37 0.38 1.90 16 15 C -0.06 -1.55 1.06 -50.53 -0.05 -1.60 16 16 C -0.12 -2.54 7.58 71.98 0.55 -1.99 16 17 C 0.05 1.41 5.58 86.43 0.48 1.89 16 18 N -0.51 -13.72 5.69 -903.74 -5.14 -18.86 16 19 C 0.01 0.30 9.54 127.69 1.22 1.52 16 20 C 0.05 1.22 5.65 86.11 0.49 1.71 16 21 C -0.06 -1.39 1.05 -50.54 -0.05 -1.44 16 22 C -0.12 -2.18 7.58 71.98 0.55 -1.63 16 23 C 0.03 1.03 5.16 86.43 0.45 1.47 16 24 H 0.07 1.97 6.12 -2.39 -0.01 1.96 16 25 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.05 1.79 6.39 -2.38 -0.02 1.78 16 27 H -0.01 -0.55 7.16 -2.39 -0.02 -0.57 16 28 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 29 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 30 H 0.04 1.86 7.31 -2.38 -0.02 1.84 16 31 H 0.06 1.82 5.23 -2.39 -0.01 1.81 16 32 H 0.07 1.27 7.16 -2.39 -0.02 1.25 16 33 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.07 1.44 7.21 -2.38 -0.02 1.42 16 35 H 0.08 2.28 7.90 -2.39 -0.02 2.26 16 36 H 0.02 0.81 7.45 -2.39 -0.02 0.79 16 37 H 0.01 0.32 8.00 -2.39 -0.02 0.30 16 38 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.03 1.01 7.40 -2.39 -0.02 1.00 16 41 H 0.09 2.07 7.90 -2.38 -0.02 2.06 16 42 H 0.06 1.08 7.13 -2.38 -0.02 1.06 16 43 H 0.07 1.23 7.23 -2.39 -0.02 1.22 16 44 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.06 1.47 5.83 -2.39 -0.01 1.45 16 46 H 0.07 2.08 7.73 -2.39 -0.02 2.06 16 Total: -1.00 -66.01 337.92 -0.74 -66.74 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: 0.92 Total: 11.40 kcal Atomic # 6 Polarization: -31.48 SS G_CDS: 5.51 Total: -25.97 kcal Atomic # 7 Polarization: -91.59 SS G_CDS: -9.20 Total: -100.78 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.60 kcal Total: -66.01 -0.74 -66.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706259640.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.347 kcal (2) G-P(sol) polarization free energy of solvation -66.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds