Wall clock time and date at job start Mon Mar 30 2020 05:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00018 * 2 1 4 4 H 1.48505 * 109.46912 * 240.00056 * 3 2 1 5 5 H 1.48501 * 109.47378 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47264 * 120.00213 * 3 2 1 7 7 C 1.38806 * 119.99763 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00590 * 157.11483 * 7 2 1 9 9 N 1.36942 * 120.00056 * 337.11402 * 7 2 1 10 10 C 1.46498 * 120.00212 * 145.73350 * 9 7 2 11 11 C 1.50696 * 109.47281 * 89.99790 * 10 9 7 12 12 C 1.38130 * 123.88661 * 95.00184 * 11 10 9 13 13 N 1.30419 * 112.22786 * 180.23126 * 12 11 10 14 14 S 1.56002 * 108.39860 * 359.59647 * 13 12 11 15 15 N 1.30423 * 123.88513 * 274.96060 * 11 10 9 16 16 C 1.46506 * 119.99959 * 325.73005 * 9 7 2 17 17 C 1.52995 * 109.47116 * 277.45936 * 16 9 7 18 18 F 1.39901 * 109.47342 * 59.99825 * 17 16 9 19 19 F 1.39904 * 109.47345 * 179.97438 * 17 16 9 20 20 F 1.39906 * 109.47091 * 300.00130 * 17 16 9 21 21 H 0.97001 * 119.99402 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.46905 * 329.99838 * 10 9 7 23 23 H 1.08999 * 109.47085 * 209.99906 * 10 9 7 24 24 H 1.07994 * 123.88195 * 359.96568 * 12 11 10 25 25 H 1.09003 * 109.46917 * 37.45898 * 16 9 7 26 26 H 1.09000 * 109.46959 * 157.45727 * 16 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0264 -1.2389 -0.3642 9 7 1.4063 -2.3416 0.4602 10 6 1.7149 -3.6345 -0.1557 11 6 2.8817 -4.2657 0.5592 12 6 2.7524 -5.1825 1.5843 13 7 3.9082 -5.5773 2.0418 14 16 5.0304 -4.8559 1.2332 15 7 4.1299 -4.0098 0.2807 16 6 0.4516 -2.2677 1.5690 17 6 1.2123 -2.2457 2.8963 18 9 2.0558 -1.1302 2.9320 19 9 0.3007 -2.1745 3.9552 20 9 1.9760 -3.4118 3.0154 21 1 -0.4849 0.8401 -0.0004 22 1 1.9692 -3.4856 -1.2051 23 1 0.8463 -4.2888 -0.0816 24 1 1.8035 -5.5290 1.9659 25 1 -0.1434 -1.3591 1.4761 26 1 -0.2056 -3.1368 1.5411 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708357687.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:04 Heat of formation + Delta-G solvation = -72.724905 kcal Electronic energy + Delta-G solvation = -19374.679861 eV Core-core repulsion = 15780.512191 eV Total energy + Delta-G solvation = -3594.167670 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.035 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.03923 -46.66781 -46.44192 -40.18701 -35.99837 -32.91534 -31.60860 -29.13550 -27.24307 -24.59984 -23.40065 -21.28245 -20.12298 -18.75161 -17.74585 -17.44006 -17.11571 -16.17119 -15.31503 -15.12107 -14.70453 -13.94836 -13.69900 -13.56575 -13.35317 -13.19795 -13.03293 -12.70913 -12.64788 -12.08755 -11.48127 -11.30304 -11.08385 -10.94618 -10.71993 -10.47224 -10.35452 -10.29411 -10.19541 -10.17973 -8.83529 -8.36454 -7.09991 -6.08903 -3.66456 1.28361 2.12094 2.36661 2.72245 3.30985 3.36257 3.43125 3.89584 4.31909 4.83209 5.03707 5.09554 5.19073 5.24894 5.57386 5.62283 5.79097 6.00311 6.16349 6.33636 6.50402 7.02396 7.28801 7.67196 8.10062 8.81400 9.44103 9.91219 10.93897 Molecular weight = 267.03amu Principal moments of inertia in cm(-1) A = 0.021349 B = 0.009517 C = 0.007944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.196587 B = 2941.482453 C = 3523.764811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.022 3.978 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.268 4.268 8 H 0.075 0.925 9 N -0.551 5.551 10 C 0.218 3.782 11 C 0.058 3.942 12 C 0.057 3.943 13 N -0.579 5.579 14 S 0.596 5.404 15 N -0.545 5.545 16 C 0.097 3.903 17 C 0.408 3.592 18 F -0.180 7.180 19 F -0.210 7.210 20 F -0.199 7.199 21 H 0.262 0.738 22 H 0.084 0.916 23 H 0.071 0.929 24 H 0.194 0.806 25 H 0.141 0.859 26 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.104 -7.897 2.309 8.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.179 4.179 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.397 4.397 8 H 0.093 0.907 9 N -0.267 5.267 10 C 0.087 3.913 11 C -0.121 4.121 12 C -0.139 4.139 13 N -0.420 5.420 14 S 0.640 5.360 15 N -0.386 5.386 16 C -0.034 4.034 17 C 0.351 3.649 18 F -0.162 7.162 19 F -0.192 7.192 20 F -0.181 7.181 21 H 0.072 0.928 22 H 0.102 0.898 23 H 0.089 0.911 24 H 0.210 0.790 25 H 0.158 0.842 26 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.170 -7.878 2.437 9.241 hybrid contribution -1.173 1.034 0.533 1.652 sum 2.997 -6.844 2.970 8.040 Atomic orbital electron populations 1.69830 1.05663 1.26763 1.50477 1.25093 0.95056 0.99055 0.98675 0.86340 0.79381 0.82349 0.78705 1.20348 1.21328 1.20425 1.19105 0.95807 0.85004 1.39754 0.90710 1.43691 1.48421 1.02517 1.32082 1.19612 0.89227 0.86789 0.95711 1.24055 0.93593 0.96386 0.98076 1.23688 0.96920 0.97624 0.95713 1.72349 1.06686 1.31099 1.31864 1.78855 1.20721 1.22149 1.14282 1.72432 1.09065 1.27115 1.30033 1.22517 0.92469 1.07473 0.80922 1.23300 0.79188 0.72880 0.89557 1.93138 1.72972 1.53237 1.96849 1.93064 1.67655 1.96220 1.62239 1.93084 1.78186 1.50137 1.96704 0.92802 0.89797 0.91126 0.78978 0.84205 0.90682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.22 11.25 55.49 0.62 -22.60 15 2 C 0.02 0.57 5.01 -17.43 -0.09 0.48 15 3 Si 0.90 21.18 29.61 -169.99 -5.03 16.15 15 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 15 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 7 C -0.27 -6.82 8.61 -15.06 -0.13 -6.95 15 8 H 0.08 2.00 7.93 -52.49 -0.42 1.58 15 9 N -0.55 -12.26 2.38 -174.61 -0.42 -12.68 15 10 C 0.22 4.04 6.20 -5.20 -0.03 4.01 15 11 C 0.06 1.07 5.63 -83.23 -0.47 0.60 15 12 C 0.06 0.96 8.34 -18.19 -0.15 0.80 15 13 N -0.58 -9.96 11.45 18.95 0.22 -9.75 15 14 S 0.60 9.60 23.71 -107.50 -2.55 7.05 15 15 N -0.54 -10.43 11.45 22.71 0.26 -10.17 15 16 C 0.10 2.03 5.43 -4.04 -0.02 2.00 15 17 C 0.41 8.60 3.29 37.15 0.12 8.72 15 18 F -0.18 -4.35 16.43 2.25 0.04 -4.31 15 19 F -0.21 -4.17 17.32 2.25 0.04 -4.13 15 20 F -0.20 -4.02 12.65 2.25 0.03 -3.99 15 21 H 0.26 6.69 8.31 -40.82 -0.34 6.35 15 22 H 0.08 1.59 8.04 -51.93 -0.42 1.18 15 23 H 0.07 1.07 7.84 -51.93 -0.41 0.66 15 24 H 0.19 2.71 7.86 -52.49 -0.41 2.30 15 25 H 0.14 3.32 5.34 -51.93 -0.28 3.04 15 26 H 0.07 1.31 7.81 -51.93 -0.41 0.91 15 LS Contribution 253.20 15.07 3.82 3.82 Total: -1.00 -28.33 253.20 -5.22 -33.55 By element: Atomic # 1 Polarization: -1.13 SS G_CDS: -1.47 Total: -2.60 kcal Atomic # 6 Polarization: 10.44 SS G_CDS: -0.77 Total: 9.67 kcal Atomic # 7 Polarization: -55.88 SS G_CDS: 0.69 Total: -55.20 kcal Atomic # 9 Polarization: -12.54 SS G_CDS: 0.10 Total: -12.43 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Atomic # 16 Polarization: 9.60 SS G_CDS: -2.55 Total: 7.05 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -28.33 -5.22 -33.55 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708357687.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.179 kcal (2) G-P(sol) polarization free energy of solvation -28.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds