Wall clock time and date at job start Mon Mar 30 2020 05:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.46497 * 120.00322 * 2 1 4 4 C 1.50707 * 109.47162 * 269.99844 * 3 2 1 5 5 H 1.07998 * 119.99576 * 359.97438 * 4 3 2 6 6 C 1.37873 * 120.00057 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99930 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 119.99982 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.47411 * 89.99586 * 8 6 4 10 10 H 1.48497 * 109.47183 * 209.99666 * 8 6 4 11 11 H 1.48503 * 109.46948 * 330.00085 * 8 6 4 12 12 C 1.34780 * 120.00111 * 179.97438 * 2 1 3 13 13 O 1.21280 * 120.00423 * 179.97438 * 12 2 1 14 14 C 1.50701 * 119.99795 * 0.02562 * 12 2 1 15 15 S 1.81002 * 109.47156 * 179.97438 * 14 12 2 16 16 C 1.76193 * 100.00049 * 180.02562 * 15 14 12 17 17 N 1.32561 * 119.22481 * 359.72684 * 16 15 14 18 18 C 1.32254 * 120.73551 * 179.71922 * 17 16 15 19 19 C 1.38624 * 119.20200 * 0.54564 * 18 17 16 20 20 C 1.38619 * 118.57093 * 359.73398 * 19 18 17 21 21 N 1.32255 * 119.20153 * 359.97438 * 20 19 18 22 22 H 1.08995 * 109.47620 * 270.00337 * 1 2 3 23 23 H 1.09006 * 109.47028 * 30.00444 * 1 2 3 24 24 H 1.09002 * 109.47109 * 150.00022 * 1 2 3 25 25 H 1.09000 * 109.47018 * 29.99405 * 3 2 1 26 26 H 1.09000 * 109.47828 * 149.99700 * 3 2 1 27 27 H 0.97001 * 119.99961 * 180.02562 * 7 6 4 28 28 H 1.09002 * 109.47060 * 299.99722 * 14 12 2 29 29 H 1.09001 * 109.47380 * 59.99809 * 14 12 2 30 30 H 1.07996 * 120.40190 * 180.27953 * 18 17 16 31 31 H 1.08007 * 120.71480 * 179.75357 * 19 18 17 32 32 H 1.08007 * 120.39960 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0981 1.0957 -2.2417 6 6 3.1261 2.8778 -1.6728 7 7 3.5525 3.6184 -0.6732 8 14 3.4368 3.4174 -3.4339 9 1 2.3064 4.2600 -3.9004 10 1 4.6969 4.2007 -3.4967 11 1 3.5541 2.2203 -4.3050 12 6 2.1388 -1.1672 0.0005 13 8 3.3516 -1.1673 0.0001 14 6 1.3853 -2.4723 0.0005 15 16 2.5615 -3.8481 0.0005 16 6 1.4414 -5.2082 -0.0003 17 7 0.1370 -4.9724 0.0049 18 6 -0.7304 -5.9708 -0.0011 19 6 -0.2605 -7.2749 -0.0014 20 6 1.1095 -7.4860 -0.0009 21 7 1.9230 -6.4432 -0.0008 22 1 -0.3634 0.0001 1.0276 23 1 -0.3633 0.8900 -0.5139 24 1 -0.3633 -0.8900 -0.5138 25 1 1.6084 2.0283 0.5137 26 1 3.1499 1.1384 0.5139 27 1 4.0288 4.4447 -0.8504 28 1 0.7583 -2.5299 0.8903 29 1 0.7589 -2.5303 -0.8897 30 1 -1.7920 -5.7724 -0.0014 31 1 -0.9471 -8.1087 -0.0022 32 1 1.5078 -8.4899 -0.0015 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034651315.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:43 Heat of formation + Delta-G solvation = 19.608115 kcal Electronic energy + Delta-G solvation = -17132.979694 eV Core-core repulsion = 14220.505719 eV Total energy + Delta-G solvation = -2912.473975 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.078 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.92271 -38.97880 -34.92323 -33.96055 -32.69340 -32.26430 -30.06917 -27.45278 -25.73162 -24.75644 -24.70418 -22.74495 -19.19747 -18.20726 -17.60476 -16.61660 -16.40534 -16.15326 -15.45453 -15.35639 -14.89322 -14.82226 -14.16173 -13.76291 -13.46647 -13.17601 -12.62311 -12.22535 -11.98613 -11.89047 -11.33162 -11.16320 -11.10774 -10.90684 -10.60569 -10.39740 -10.35329 -10.17621 -9.66228 -9.50877 -9.13409 -8.45034 -7.79698 -7.67588 -6.06010 -4.11059 0.56458 0.87443 1.18297 2.12782 3.23347 3.30197 3.37221 3.42358 3.46579 3.87529 3.98999 4.32374 4.43763 4.47523 4.84012 4.87644 4.97331 5.19633 5.28827 5.45546 5.49011 5.66835 5.89124 6.01181 6.17571 6.69672 6.95813 7.38613 7.45424 7.67616 7.89528 8.19627 8.26905 8.80692 8.97008 9.54065 11.02190 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.037387 B = 0.003917 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.737407 B = 7147.139040 C = 7288.943110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.593 5.593 3 C 0.245 3.755 4 C -0.529 4.529 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.273 1.273 12 C 0.519 3.481 13 O -0.527 6.527 14 C -0.147 4.147 15 S 0.094 5.906 16 C 0.280 3.720 17 N -0.530 5.530 18 C 0.163 3.837 19 C -0.248 4.248 20 C 0.163 3.837 21 N -0.505 5.505 22 H 0.047 0.953 23 H 0.077 0.923 24 H 0.059 0.941 25 H 0.035 0.965 26 H 0.046 0.954 27 H 0.264 0.736 28 H 0.117 0.883 29 H 0.118 0.882 30 H 0.169 0.831 31 H 0.146 0.854 32 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.531 -19.313 2.424 22.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.326 5.326 3 C 0.126 3.874 4 C -0.568 4.568 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.198 1.198 12 C 0.303 3.697 13 O -0.405 6.405 14 C -0.299 4.299 15 S 0.330 5.670 16 C -0.094 4.094 17 N -0.248 5.248 18 C -0.006 4.006 19 C -0.275 4.275 20 C -0.007 4.007 21 N -0.222 5.222 22 H 0.066 0.934 23 H 0.096 0.904 24 H 0.078 0.922 25 H 0.053 0.947 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.135 0.865 29 H 0.136 0.864 30 H 0.186 0.814 31 H 0.164 0.836 32 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -8.876 -18.178 2.480 20.380 hybrid contribution -2.156 -0.516 -0.996 2.430 sum -11.032 -18.694 1.484 21.757 Atomic orbital electron populations 1.21711 0.81057 1.02874 1.00730 1.48069 1.06406 1.07318 1.70762 1.19367 0.92643 0.77614 0.97731 1.21422 1.36762 1.06375 0.92195 0.92372 1.24934 0.95249 0.96353 0.97530 1.69931 1.38317 1.14283 1.30773 0.86478 0.77695 0.78617 0.84546 1.20634 1.21029 1.19831 1.19421 0.87741 0.84125 0.78400 1.90725 1.13230 1.86499 1.50036 1.23894 1.02321 0.95303 1.08383 1.86791 1.02609 0.89300 1.88292 1.25767 0.92634 0.96975 0.93994 1.68922 1.02408 1.36705 1.16801 1.23224 1.00031 0.88519 0.88852 1.22769 0.98105 0.99584 1.07053 1.23273 0.90168 0.98226 0.89031 1.68550 1.39892 0.98367 1.15371 0.93423 0.90438 0.92246 0.94669 0.93593 0.92651 0.86516 0.86385 0.81362 0.83577 0.81245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.25 10.24 59.84 0.61 1.86 16 2 N -0.59 -12.52 2.86 -182.96 -0.52 -13.05 16 3 C 0.25 6.39 5.16 -5.19 -0.03 6.37 16 4 C -0.53 -14.99 9.39 -34.44 -0.32 -15.31 16 5 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 8 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 12 C 0.52 10.87 7.69 -10.98 -0.08 10.79 16 13 O -0.53 -13.31 15.44 5.56 0.09 -13.22 16 14 C -0.15 -2.32 3.84 36.01 0.14 -2.18 16 15 S 0.09 1.54 21.38 -107.50 -2.30 -0.76 16 16 C 0.28 4.05 7.85 -90.83 -0.71 3.34 16 17 N -0.53 -6.72 9.14 -13.44 -0.12 -6.84 16 18 C 0.16 1.46 11.30 -17.23 -0.19 1.27 16 19 C -0.25 -1.85 10.16 -39.30 -0.40 -2.25 16 20 C 0.16 1.50 11.30 -17.23 -0.19 1.31 16 21 N -0.50 -6.81 10.40 -13.44 -0.14 -6.95 16 22 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 24 H 0.06 0.76 6.44 -51.93 -0.33 0.43 16 25 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 26 H 0.05 1.35 7.42 -51.93 -0.39 0.96 16 27 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.12 1.61 8.07 -51.92 -0.42 1.19 16 29 H 0.12 1.71 7.37 -51.91 -0.38 1.32 16 30 H 0.17 0.91 8.06 -52.49 -0.42 0.48 16 31 H 0.15 0.56 8.06 -52.48 -0.42 0.14 16 32 H 0.17 0.94 8.06 -52.48 -0.42 0.52 16 LS Contribution 299.65 15.07 4.52 4.52 Total: -1.00 -34.86 299.65 -7.65 -42.51 By element: Atomic # 1 Polarization: -0.51 SS G_CDS: -3.60 Total: -4.11 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: -1.28 Total: 6.85 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: -0.05 Total: -52.66 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: 0.09 Total: -13.22 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -2.30 Total: -0.76 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -34.86 -7.65 -42.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034651315.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.114 kcal (2) G-P(sol) polarization free energy of solvation -34.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds