Wall clock time and date at job start Mon Mar 30 2020 05:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.46497 * 120.00322 * 2 1 4 4 C 1.50707 * 109.47162 * 269.99844 * 3 2 1 5 5 H 1.07998 * 119.99576 * 359.97438 * 4 3 2 6 6 C 1.37873 * 120.00057 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99930 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 119.99982 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.47411 * 89.99586 * 8 6 4 10 10 H 1.48497 * 109.47183 * 209.99666 * 8 6 4 11 11 H 1.48503 * 109.46948 * 330.00085 * 8 6 4 12 12 C 1.34780 * 120.00111 * 179.97438 * 2 1 3 13 13 O 1.21280 * 120.00423 * 179.97438 * 12 2 1 14 14 C 1.50701 * 119.99795 * 0.02562 * 12 2 1 15 15 S 1.81002 * 109.47156 * 179.97438 * 14 12 2 16 16 C 1.76193 * 100.00049 * 180.02562 * 15 14 12 17 17 N 1.32561 * 119.22481 * 359.72684 * 16 15 14 18 18 C 1.32254 * 120.73551 * 179.71922 * 17 16 15 19 19 C 1.38624 * 119.20200 * 0.54564 * 18 17 16 20 20 C 1.38619 * 118.57093 * 359.73398 * 19 18 17 21 21 N 1.32255 * 119.20153 * 359.97438 * 20 19 18 22 22 H 1.08995 * 109.47620 * 270.00337 * 1 2 3 23 23 H 1.09006 * 109.47028 * 30.00444 * 1 2 3 24 24 H 1.09002 * 109.47109 * 150.00022 * 1 2 3 25 25 H 1.09000 * 109.47018 * 29.99405 * 3 2 1 26 26 H 1.09000 * 109.47828 * 149.99700 * 3 2 1 27 27 H 0.97001 * 119.99961 * 180.02562 * 7 6 4 28 28 H 1.09002 * 109.47060 * 299.99722 * 14 12 2 29 29 H 1.09001 * 109.47380 * 59.99809 * 14 12 2 30 30 H 1.07996 * 120.40190 * 180.27953 * 18 17 16 31 31 H 1.08007 * 120.71480 * 179.75357 * 19 18 17 32 32 H 1.08007 * 120.39960 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0981 1.0957 -2.2417 6 6 3.1261 2.8778 -1.6728 7 7 3.5525 3.6184 -0.6732 8 14 3.4368 3.4174 -3.4339 9 1 2.3064 4.2600 -3.9004 10 1 4.6969 4.2007 -3.4967 11 1 3.5541 2.2203 -4.3050 12 6 2.1388 -1.1672 0.0005 13 8 3.3516 -1.1673 0.0001 14 6 1.3853 -2.4723 0.0005 15 16 2.5615 -3.8481 0.0005 16 6 1.4414 -5.2082 -0.0003 17 7 0.1370 -4.9724 0.0049 18 6 -0.7304 -5.9708 -0.0011 19 6 -0.2605 -7.2749 -0.0014 20 6 1.1095 -7.4860 -0.0009 21 7 1.9230 -6.4432 -0.0008 22 1 -0.3634 0.0001 1.0276 23 1 -0.3633 0.8900 -0.5139 24 1 -0.3633 -0.8900 -0.5138 25 1 1.6084 2.0283 0.5137 26 1 3.1499 1.1384 0.5139 27 1 4.0288 4.4447 -0.8504 28 1 0.7583 -2.5299 0.8903 29 1 0.7589 -2.5303 -0.8897 30 1 -1.7920 -5.7724 -0.0014 31 1 -0.9471 -8.1087 -0.0022 32 1 1.5078 -8.4899 -0.0015 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034651315.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:43 Heat of formation + Delta-G solvation = -4.856572 kcal Electronic energy + Delta-G solvation = -17134.040562 eV Core-core repulsion = 14220.505719 eV Total energy + Delta-G solvation = -2913.534843 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.078 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.72361 -40.66941 -36.69680 -34.83925 -34.73136 -33.03026 -31.63237 -29.22923 -27.30836 -25.66153 -25.46604 -24.69033 -20.57287 -19.36470 -18.72286 -18.47543 -17.99392 -17.18873 -16.79845 -16.78465 -16.16927 -15.96151 -15.66233 -14.70326 -14.67391 -14.45955 -14.20461 -13.87199 -13.58330 -13.46724 -13.13725 -12.82622 -12.55255 -12.23034 -12.11208 -11.96101 -11.72790 -11.42686 -11.16714 -10.87054 -10.64486 -10.31683 -9.51623 -8.87259 -8.23528 -6.38243 -0.22013 0.06184 0.16352 0.99781 1.36652 1.40115 1.50107 1.63079 2.26143 2.42014 2.69012 3.06536 3.24457 3.52820 3.63939 3.79696 3.98383 4.21586 4.26315 4.40611 4.44395 4.70492 4.85596 4.93557 4.97958 5.20527 5.38366 5.51945 5.78085 5.96858 6.03498 6.58021 6.71130 6.86560 7.19326 7.35592 8.83863 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.037387 B = 0.003917 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.737407 B = 7147.139040 C = 7288.943110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.600 5.600 3 C 0.259 3.741 4 C -0.545 4.545 5 H 0.054 0.946 6 C 0.008 3.992 7 N -0.928 5.928 8 Si 0.968 3.032 9 H -0.262 1.262 10 H -0.281 1.281 11 H -0.274 1.274 12 C 0.510 3.490 13 O -0.581 6.581 14 C -0.114 4.114 15 S 0.025 5.975 16 C 0.268 3.732 17 N -0.544 5.544 18 C 0.150 3.850 19 C -0.219 4.219 20 C 0.147 3.853 21 N -0.536 5.536 22 H 0.075 0.925 23 H 0.072 0.928 24 H 0.093 0.907 25 H 0.030 0.970 26 H 0.001 0.999 27 H 0.268 0.732 28 H 0.141 0.859 29 H 0.136 0.864 30 H 0.208 0.792 31 H 0.193 0.807 32 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.561 -21.506 1.528 26.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.331 5.331 3 C 0.138 3.862 4 C -0.584 4.584 5 H 0.072 0.928 6 C -0.191 4.191 7 N -0.567 5.567 8 Si 0.792 3.208 9 H -0.186 1.186 10 H -0.206 1.206 11 H -0.199 1.199 12 C 0.297 3.703 13 O -0.463 6.463 14 C -0.266 4.266 15 S 0.260 5.740 16 C -0.108 4.108 17 N -0.262 5.262 18 C -0.018 4.018 19 C -0.244 4.244 20 C -0.021 4.021 21 N -0.254 5.254 22 H 0.094 0.906 23 H 0.091 0.909 24 H 0.111 0.889 25 H 0.048 0.952 26 H 0.019 0.981 27 H 0.077 0.923 28 H 0.159 0.841 29 H 0.154 0.846 30 H 0.225 0.775 31 H 0.210 0.790 32 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -11.987 -20.416 1.590 23.728 hybrid contribution -1.342 -0.039 -0.662 1.497 sum -13.329 -20.455 0.927 24.432 Atomic orbital electron populations 1.22024 0.77361 1.04303 1.03019 1.48065 1.08674 1.05841 1.70510 1.18841 0.91261 0.79861 0.96246 1.21700 1.37086 1.06632 0.92982 0.92779 1.25853 0.94808 0.96401 1.02018 1.70047 1.38875 1.14755 1.33036 0.85405 0.78130 0.78190 0.79028 1.18646 1.20628 1.19882 1.20244 0.87455 0.85631 0.76993 1.90692 1.15870 1.87524 1.52174 1.23566 1.01163 0.91672 1.10180 1.86932 1.05234 0.91670 1.90168 1.25066 0.92825 0.96250 0.96636 1.68855 1.01866 1.38445 1.17084 1.24002 1.01236 0.88569 0.88010 1.23294 0.97893 1.00419 1.02787 1.23990 0.91109 0.98501 0.88477 1.68453 1.41764 0.98922 1.16229 0.90640 0.90921 0.88901 0.95167 0.98126 0.92331 0.84131 0.84639 0.77545 0.78971 0.77891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.19 10.24 127.77 1.31 3.50 16 2 N -0.60 -25.65 2.86 -851.14 -2.43 -28.08 16 3 C 0.26 14.07 5.16 85.64 0.44 14.52 16 4 C -0.55 -31.71 9.39 25.60 0.24 -31.47 16 5 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 6 C 0.01 0.48 5.46 84.65 0.46 0.95 16 7 N -0.93 -56.42 13.29 21.45 0.28 -56.14 16 8 Si 0.97 45.29 29.54 68.60 2.03 47.32 16 9 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 11 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 12 C 0.51 21.93 7.69 87.66 0.67 22.60 16 13 O -0.58 -31.06 15.44 -3.03 -0.05 -31.11 16 14 C -0.11 -3.56 3.84 71.24 0.27 -3.28 16 15 S 0.02 0.84 21.38 -56.49 -1.21 -0.37 16 16 C 0.27 7.52 7.85 180.42 1.42 8.94 16 17 N -0.54 -12.47 9.14 -196.45 -1.80 -14.26 16 18 C 0.15 2.06 11.30 84.72 0.96 3.02 16 19 C -0.22 -2.20 10.16 22.45 0.23 -1.97 16 20 C 0.15 2.25 11.30 84.72 0.96 3.21 16 21 N -0.54 -13.89 10.40 -196.44 -2.04 -15.93 16 22 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 23 H 0.07 2.21 8.07 -2.38 -0.02 2.19 16 24 H 0.09 2.09 6.44 -2.39 -0.02 2.08 16 25 H 0.03 1.64 8.07 -2.39 -0.02 1.62 16 26 H 0.00 0.04 7.42 -2.39 -0.02 0.02 16 27 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 28 H 0.14 3.64 8.07 -2.39 -0.02 3.62 16 29 H 0.14 3.70 7.37 -2.40 -0.02 3.68 16 30 H 0.21 1.10 8.06 -2.91 -0.02 1.08 16 31 H 0.19 0.16 8.06 -2.91 -0.02 0.14 16 32 H 0.20 1.48 8.06 -2.91 -0.02 1.46 16 Total: -1.00 -81.10 299.65 2.88 -78.22 By element: Atomic # 1 Polarization: -0.79 SS G_CDS: 1.13 Total: 0.34 kcal Atomic # 6 Polarization: 13.05 SS G_CDS: 6.96 Total: 20.01 kcal Atomic # 7 Polarization: -108.43 SS G_CDS: -5.98 Total: -114.42 kcal Atomic # 8 Polarization: -31.06 SS G_CDS: -0.05 Total: -31.11 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Atomic # 16 Polarization: 0.84 SS G_CDS: -1.21 Total: -0.37 kcal Total: -81.10 2.88 -78.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034651315.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.364 kcal (2) G-P(sol) polarization free energy of solvation -81.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds