Wall clock time and date at job start Mon Mar 30 2020 05:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46903 * 110.99435 * 2 1 4 4 C 1.50693 * 109.47441 * 66.04562 * 3 2 1 5 5 H 1.08004 * 119.99951 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00066 * 179.97438 * 4 3 2 7 7 N 1.31510 * 120.00083 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99836 * 179.97438 * 6 4 3 9 9 H 1.48491 * 109.47271 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.46980 * 119.99944 * 8 6 4 11 11 H 1.48502 * 109.46694 * 239.99778 * 8 6 4 12 12 C 1.40346 * 111.00043 * 236.04355 * 2 1 3 13 13 N 1.34077 * 125.86388 * 63.07071 * 12 2 1 14 14 C 1.32490 * 109.24080 * 180.08617 * 13 12 2 15 15 S 1.76267 * 141.82799 * 179.97438 * 14 13 12 16 16 C 1.75780 * 90.69571 * 179.68268 * 15 14 13 17 17 C 1.30930 * 109.79934 * 0.02562 * 16 15 14 18 18 N 1.35065 * 108.95207 * 359.68381 * 14 13 12 19 19 C 1.34903 * 125.86004 * 242.80343 * 12 2 1 20 20 C 1.50696 * 126.51142 * 359.97438 * 19 12 2 21 21 O 1.42902 * 109.47477 * 265.60483 * 20 19 12 22 22 H 1.09007 * 109.47009 * 178.48133 * 1 2 3 23 23 H 1.08993 * 109.47971 * 298.48371 * 1 2 3 24 24 H 1.09003 * 109.47296 * 58.49156 * 1 2 3 25 25 H 1.08999 * 109.46818 * 186.04354 * 3 2 1 26 26 H 1.09003 * 109.46957 * 306.04160 * 3 2 1 27 27 H 0.96996 * 120.00291 * 180.02562 * 7 6 4 28 28 H 1.08002 * 125.10006 * 179.97438 * 16 15 14 29 29 H 1.08000 * 121.84179 * 180.02562 * 17 16 15 30 30 H 1.09004 * 109.47113 * 25.60600 * 20 19 12 31 31 H 1.08999 * 109.47083 * 145.60242 * 20 19 12 32 32 H 0.96697 * 113.99909 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6368 2.0472 1.2983 5 1 1.0738 1.5115 2.0484 6 6 2.0275 3.3493 1.5288 7 7 2.7134 4.0014 0.6157 8 14 1.5823 4.1871 3.1380 9 1 0.8133 3.2452 3.9902 10 1 2.8237 4.5936 3.8442 11 1 0.7557 5.3886 2.8583 12 6 1.9720 -0.7319 -1.0868 13 7 1.7941 -0.4364 -2.3825 14 6 2.4077 -1.3454 -3.1258 15 16 2.7199 -1.7813 -4.8049 16 6 3.6531 -3.1795 -4.2909 17 6 3.6778 -3.2398 -2.9832 18 7 3.0028 -2.2465 -2.3145 19 6 2.7217 -1.8505 -1.0070 20 6 3.1714 -2.5404 0.2550 21 8 4.4776 -2.0817 0.6092 22 1 -0.3633 -1.0274 -0.0272 23 1 -0.3635 0.4900 0.9032 24 1 -0.3634 0.5371 -0.8762 25 1 3.0796 1.3445 -0.1082 26 1 1.5610 1.9273 -0.8310 27 1 2.9886 4.9172 0.7779 28 1 4.1332 -3.8837 -4.9542 29 1 4.2002 -4.0262 -2.4588 30 1 2.4749 -2.3121 1.0618 31 1 3.1968 -3.6177 0.0909 32 1 4.8310 -2.4844 1.4142 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035429028.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:36 Heat of formation + Delta-G solvation = 65.793807 kcal Electronic energy + Delta-G solvation = -18057.357396 eV Core-core repulsion = 15146.886183 eV Total energy + Delta-G solvation = -2910.471213 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.078 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.35557 -37.38822 -36.46676 -35.02112 -32.39071 -30.97449 -29.22124 -27.16477 -25.77729 -24.58178 -23.71313 -22.10727 -19.81365 -19.56987 -17.94369 -17.32852 -16.39988 -15.79304 -15.70873 -15.24660 -14.68539 -14.49493 -14.07084 -13.76265 -13.45445 -13.20180 -12.87952 -11.94959 -11.79198 -11.55696 -11.25431 -11.23895 -10.92990 -10.69831 -10.49127 -10.25829 -10.13381 -9.96817 -9.71700 -9.17197 -8.41400 -8.39716 -7.56417 -7.50636 -5.96560 -3.98878 0.96219 1.00368 1.67005 2.29153 2.65311 3.16145 3.35119 3.41733 3.46383 4.42816 4.48064 4.61939 4.86443 4.93715 5.08901 5.25885 5.38749 5.39679 5.50093 5.79529 6.04961 6.36723 6.42594 6.45560 6.73679 7.04545 7.36513 7.47730 7.80916 7.82323 8.00074 8.10979 8.21531 8.59609 9.07301 9.64064 11.14617 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.027120 B = 0.005335 C = 0.004933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.187052 B = 5247.396057 C = 5674.726349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.461 5.461 3 C 0.202 3.798 4 C -0.509 4.509 5 H 0.065 0.935 6 C 0.056 3.944 7 N -0.895 5.895 8 Si 0.900 3.100 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.262 3.738 13 N -0.474 5.474 14 C 0.148 3.852 15 S 0.172 5.828 16 C -0.238 4.238 17 C 0.065 3.935 18 N -0.404 5.404 19 C -0.023 4.023 20 C 0.170 3.830 21 O -0.563 6.563 22 H 0.044 0.956 23 H 0.082 0.918 24 H 0.028 0.972 25 H 0.030 0.970 26 H 0.005 0.995 27 H 0.261 0.739 28 H 0.193 0.807 29 H 0.177 0.823 30 H 0.085 0.915 31 H 0.041 0.959 32 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.750 -18.018 -6.993 19.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.185 5.185 3 C 0.078 3.922 4 C -0.547 4.547 5 H 0.084 0.916 6 C -0.145 4.145 7 N -0.534 5.534 8 Si 0.728 3.272 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.211 1.211 12 C 0.040 3.960 13 N -0.201 5.201 14 C -0.219 4.219 15 S 0.421 5.579 16 C -0.375 4.375 17 C -0.065 4.065 18 N -0.086 5.086 19 C -0.136 4.136 20 C 0.092 3.908 21 O -0.369 6.369 22 H 0.062 0.938 23 H 0.100 0.900 24 H 0.047 0.953 25 H 0.049 0.951 26 H 0.023 0.977 27 H 0.071 0.929 28 H 0.210 0.790 29 H 0.194 0.806 30 H 0.103 0.897 31 H 0.059 0.941 32 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 1.137 -16.526 -8.591 18.660 hybrid contribution 0.587 -0.587 2.073 2.233 sum 1.725 -17.112 -6.518 18.392 Atomic orbital electron populations 1.22218 0.86839 0.99508 1.01990 1.60655 1.08092 1.19154 1.30582 1.19786 0.95627 0.79560 0.97249 1.21136 1.35130 0.97022 1.01438 0.91635 1.24984 0.95259 0.97265 0.97017 1.69994 1.38077 1.11381 1.33978 0.86414 0.78096 0.79322 0.83403 1.19616 1.21035 1.21107 1.19377 0.97162 0.92217 0.87204 1.70817 1.22923 1.23158 1.03169 1.25934 1.04446 0.94111 0.97444 1.84598 1.55336 1.22979 0.95011 1.24952 1.09959 1.05454 0.97161 1.20312 0.99347 0.94342 0.92505 1.43682 1.37469 1.20182 1.07256 1.20542 1.09377 1.01735 0.81967 1.20101 0.85452 0.93765 0.91511 1.86638 1.31970 1.70332 1.47926 0.93751 0.89953 0.95317 0.95145 0.97670 0.92944 0.78976 0.80618 0.89652 0.94058 0.77519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.89 9.29 60.07 0.56 1.45 16 2 N -0.46 -11.02 4.74 -182.81 -0.87 -11.88 16 3 C 0.20 5.74 4.65 -4.98 -0.02 5.72 16 4 C -0.51 -14.75 8.54 -34.44 -0.29 -15.05 16 5 H 0.07 1.83 7.10 -52.48 -0.37 1.46 16 6 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 7 N -0.90 -27.77 13.29 55.43 0.74 -27.03 16 8 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 9 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 12 C 0.26 5.91 5.49 -153.76 -0.84 5.06 16 13 N -0.47 -10.78 11.30 -12.53 -0.14 -10.93 16 14 C 0.15 2.77 8.92 -88.67 -0.79 1.98 16 15 S 0.17 2.23 23.37 -107.50 -2.51 -0.28 16 16 C -0.24 -2.29 11.11 29.03 0.32 -1.96 16 17 C 0.06 0.76 11.26 -16.73 -0.19 0.57 16 18 N -0.40 -6.84 3.20 -59.31 -0.19 -7.03 16 19 C -0.02 -0.45 6.92 -80.30 -0.56 -1.00 16 20 C 0.17 2.60 7.54 36.00 0.27 2.87 16 21 O -0.56 -9.02 13.64 -35.23 -0.48 -9.50 16 22 H 0.04 0.81 8.11 -51.92 -0.42 0.38 16 23 H 0.08 1.73 6.90 -51.93 -0.36 1.37 16 24 H 0.03 0.63 8.13 -51.93 -0.42 0.21 16 25 H 0.03 0.96 8.06 -51.93 -0.42 0.54 16 26 H 0.01 0.17 8.11 -51.93 -0.42 -0.25 16 27 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 28 H 0.19 1.01 8.06 -52.49 -0.42 0.58 16 29 H 0.18 1.44 8.06 -52.49 -0.42 1.02 16 30 H 0.09 1.31 8.10 -51.93 -0.42 0.89 16 31 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.38 3.82 9.12 45.56 0.42 4.23 16 LS Contribution 295.78 15.07 4.46 4.46 Total: -1.00 -36.81 295.78 -8.48 -45.29 By element: Atomic # 1 Polarization: 1.54 SS G_CDS: -2.82 Total: -1.28 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -1.64 Total: 1.19 kcal Atomic # 7 Polarization: -56.41 SS G_CDS: -0.46 Total: -56.87 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: -0.48 Total: -9.50 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 16 Polarization: 2.23 SS G_CDS: -2.51 Total: -0.28 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -36.81 -8.48 -45.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035429028.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.088 kcal (2) G-P(sol) polarization free energy of solvation -36.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds