Wall clock time and date at job start Mon Mar 30 2020 05:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00038 * 2 1 4 4 H 1.48504 * 109.47492 * 270.00256 * 3 2 1 5 5 H 1.48493 * 109.47386 * 30.00568 * 3 2 1 6 6 H 1.48500 * 109.46982 * 150.00525 * 3 2 1 7 7 C 1.37885 * 119.99794 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99816 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99908 * 179.97438 * 7 2 1 10 10 N 1.46496 * 109.46760 * 179.97438 * 9 7 2 11 11 C 1.34774 * 119.99544 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00472 * 0.02562 * 11 10 9 13 13 C 1.50706 * 120.00020 * 180.02562 * 11 10 9 14 14 S 1.81400 * 109.47256 * 180.02562 * 13 11 10 15 15 C 1.76194 * 102.99896 * 179.97438 * 14 13 11 16 16 C 1.39304 * 120.89019 * 359.71815 * 15 14 13 17 17 C 1.38018 * 119.13909 * 179.77469 * 16 15 14 18 18 N 1.31952 * 120.98102 * 0.51042 * 17 16 15 19 19 C 1.32031 * 121.96117 * 359.74122 * 18 17 16 20 20 C 1.38462 * 120.74687 * 359.97438 * 19 18 17 21 21 N 1.40052 * 120.52820 * 179.97438 * 20 19 18 22 22 H 0.96996 * 119.99562 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.46805 * 59.99757 * 9 7 2 24 24 H 1.08992 * 109.46894 * 299.99907 * 9 7 2 25 25 H 0.96994 * 120.00700 * 0.02562 * 10 9 7 26 26 H 1.09001 * 109.46953 * 299.99667 * 13 11 10 27 27 H 1.09000 * 109.47318 * 59.99264 * 13 11 10 28 28 H 1.08000 * 120.42870 * 0.02562 * 16 15 14 29 29 H 1.08006 * 119.50880 * 180.24893 * 17 16 15 30 30 H 1.07997 * 119.62966 * 179.97438 * 19 18 17 31 31 H 0.97004 * 119.99744 * 180.02562 * 21 20 19 32 32 H 0.97002 * 120.00070 * 0.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1942 -0.0011 10 7 3.9998 -2.5754 -0.0010 11 6 5.3248 -2.8217 -0.0009 12 8 6.1130 -1.8999 -0.0005 13 6 5.8272 -4.2425 -0.0014 14 16 7.6412 -4.2426 -0.0004 15 6 8.0375 -5.9594 -0.0003 16 6 7.0335 -6.9251 0.0050 17 6 7.3848 -8.2598 0.0001 18 7 8.6518 -8.6287 0.0007 19 6 9.6359 -7.7486 0.0008 20 6 9.3704 -6.3897 -0.0002 21 7 10.4179 -5.4601 0.0005 22 1 -0.4849 0.8400 0.0004 23 1 3.8752 -0.6805 0.8888 24 1 3.8745 -0.6802 -0.8911 25 1 3.3695 -3.3126 -0.0010 26 1 5.4638 -4.7566 0.8884 27 1 5.4639 -4.7561 -0.8915 28 1 5.9937 -6.6331 0.0087 29 1 6.6113 -9.0135 0.0001 30 1 10.6597 -8.0924 0.0017 31 1 10.2230 -4.5098 0.0001 32 1 11.3382 -5.7665 0.0013 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037190265.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:21 Heat of formation + Delta-G solvation = -2.224974 kcal Electronic energy + Delta-G solvation = -16748.762419 eV Core-core repulsion = 13835.341690 eV Total energy + Delta-G solvation = -2913.420729 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.078 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.18369 -39.09499 -35.32932 -34.49481 -32.63206 -32.37072 -30.28999 -29.21314 -27.49402 -24.10358 -23.15454 -22.19790 -20.24521 -18.40402 -17.74591 -17.25603 -16.91501 -16.11021 -15.80857 -15.48657 -15.16591 -14.85457 -14.39070 -14.31911 -13.96733 -13.32269 -13.28229 -12.95690 -12.43939 -12.31293 -12.05657 -11.62011 -11.10741 -10.84210 -10.56960 -10.41961 -10.04980 -9.66658 -9.60250 -9.51253 -8.86981 -8.42803 -8.32795 -7.37966 -6.28770 -4.32171 0.90800 1.14659 1.16909 2.20255 2.91809 3.21630 3.28655 3.36098 3.47856 3.64418 3.72523 4.26707 4.39561 4.56850 4.77562 4.88393 4.97700 5.06565 5.11155 5.19332 5.37009 5.52373 5.71287 6.33753 6.66376 6.94931 6.99808 7.00801 7.26139 7.36712 7.87511 7.96026 8.34621 8.58800 8.72667 9.30163 10.83005 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.044857 B = 0.003503 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.055079 B = 7991.343162 C = 8594.951823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.079 3.921 3 Si 0.877 3.123 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.547 4.547 8 H 0.080 0.920 9 C 0.221 3.779 10 N -0.696 5.696 11 C 0.518 3.482 12 O -0.540 6.540 13 C -0.146 4.146 14 S -0.025 6.025 15 C -0.140 4.140 16 C -0.140 4.140 17 C 0.056 3.944 18 N -0.454 5.454 19 C 0.038 3.962 20 C 0.187 3.813 21 N -0.864 5.864 22 H 0.269 0.731 23 H 0.028 0.972 24 H 0.024 0.976 25 H 0.399 0.601 26 H 0.116 0.884 27 H 0.116 0.884 28 H 0.135 0.865 29 H 0.155 0.845 30 H 0.154 0.846 31 H 0.404 0.596 32 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.881 -13.879 0.027 21.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.125 4.125 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.585 4.585 8 H 0.098 0.902 9 C 0.099 3.901 10 N -0.345 5.345 11 C 0.300 3.700 12 O -0.418 6.418 13 C -0.298 4.298 14 S 0.216 5.784 15 C -0.265 4.265 16 C -0.167 4.167 17 C -0.104 4.104 18 N -0.163 5.163 19 C -0.126 4.126 20 C 0.074 3.926 21 N -0.404 5.404 22 H 0.079 0.921 23 H 0.046 0.954 24 H 0.041 0.959 25 H 0.233 0.767 26 H 0.134 0.866 27 H 0.134 0.866 28 H 0.153 0.847 29 H 0.172 0.828 30 H 0.172 0.828 31 H 0.234 0.766 32 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 18.078 -12.932 0.031 22.227 hybrid contribution -0.937 0.496 -0.023 1.061 sum 17.140 -12.437 0.008 21.177 Atomic orbital electron populations 1.69874 1.06223 1.27559 1.49044 1.24791 0.94805 0.99200 0.93747 0.86817 0.80564 0.83201 0.79124 1.19769 1.20796 1.18489 1.21055 0.88314 0.95326 1.53800 0.90157 1.19569 0.95429 0.78017 0.97079 1.46096 1.04952 1.11528 1.71894 1.19453 0.83795 0.88558 0.78157 1.90708 1.55137 1.45373 1.50631 1.23886 0.96904 1.01239 1.07740 1.85828 1.03609 0.97295 1.91670 1.22124 0.94858 0.99800 1.09730 1.21969 0.99041 0.93933 1.01798 1.22352 0.93135 0.94054 1.00872 1.67544 1.00501 1.38063 1.10216 1.22151 0.98990 0.86711 1.04761 1.18322 0.87015 0.91204 0.96108 1.42478 1.06157 1.07719 1.84083 0.92141 0.95409 0.95860 0.76700 0.86588 0.86579 0.84738 0.82772 0.82848 0.76606 0.76865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.90 13.96 55.43 0.77 -25.13 16 2 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 3 Si 0.88 20.94 27.47 -169.99 -4.67 16.27 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.26 -6.17 6.54 56.52 0.37 -5.80 16 7 C -0.55 -14.53 9.83 -34.44 -0.34 -14.87 16 8 H 0.08 2.21 7.84 -52.49 -0.41 1.80 16 9 C 0.22 5.22 4.50 -5.19 -0.02 5.19 16 10 N -0.70 -13.15 5.55 -61.48 -0.34 -13.49 16 11 C 0.52 9.20 7.85 -10.98 -0.09 9.11 16 12 O -0.54 -11.67 15.86 5.56 0.09 -11.58 16 13 C -0.15 -1.83 4.86 36.01 0.17 -1.66 16 14 S -0.03 -0.33 19.75 -107.50 -2.12 -2.45 16 15 C -0.14 -1.62 6.17 -38.50 -0.24 -1.86 16 16 C -0.14 -1.46 9.43 -39.27 -0.37 -1.83 16 17 C 0.06 0.58 11.17 -17.58 -0.20 0.38 16 18 N -0.45 -5.23 10.36 -13.18 -0.14 -5.37 16 19 C 0.04 0.39 11.05 -17.38 -0.19 0.19 16 20 C 0.19 1.96 6.80 -83.33 -0.57 1.39 16 21 N -0.86 -6.96 9.07 32.62 0.30 -6.66 16 22 H 0.27 7.31 8.31 -40.82 -0.34 6.98 16 23 H 0.03 0.69 7.20 -51.93 -0.37 0.32 16 24 H 0.02 0.58 7.57 -51.93 -0.39 0.18 16 25 H 0.40 6.45 8.32 -40.82 -0.34 6.11 16 26 H 0.12 1.19 7.78 -51.92 -0.40 0.79 16 27 H 0.12 1.19 7.81 -51.92 -0.41 0.79 16 28 H 0.13 1.14 6.07 -52.49 -0.32 0.82 16 29 H 0.16 1.20 8.06 -52.48 -0.42 0.78 16 30 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 31 H 0.40 3.46 7.52 -40.82 -0.31 3.16 16 32 H 0.40 2.07 8.86 -40.82 -0.36 1.71 16 LS Contribution 293.28 15.07 4.42 4.42 Total: -1.00 -32.82 293.28 -6.95 -39.78 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -3.33 Total: 6.09 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -1.93 Total: -1.87 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: 0.59 Total: -50.65 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.09 Total: -11.58 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.67 Total: 16.27 kcal Atomic # 16 Polarization: -0.33 SS G_CDS: -2.12 Total: -2.45 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -32.82 -6.95 -39.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037190265.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.551 kcal (2) G-P(sol) polarization free energy of solvation -32.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds