Wall clock time and date at job start Mon Mar 30 2020 05:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00038 * 2 1 4 4 H 1.48504 * 109.47492 * 270.00256 * 3 2 1 5 5 H 1.48493 * 109.47386 * 30.00568 * 3 2 1 6 6 H 1.48500 * 109.46982 * 150.00525 * 3 2 1 7 7 C 1.37885 * 119.99794 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99816 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99908 * 179.97438 * 7 2 1 10 10 N 1.46496 * 109.46760 * 179.97438 * 9 7 2 11 11 C 1.34774 * 119.99544 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00472 * 0.02562 * 11 10 9 13 13 C 1.50706 * 120.00020 * 180.02562 * 11 10 9 14 14 S 1.81400 * 109.47256 * 180.02562 * 13 11 10 15 15 C 1.76194 * 102.99896 * 179.97438 * 14 13 11 16 16 C 1.39304 * 120.89019 * 359.71815 * 15 14 13 17 17 C 1.38018 * 119.13909 * 179.77469 * 16 15 14 18 18 N 1.31952 * 120.98102 * 0.51042 * 17 16 15 19 19 C 1.32031 * 121.96117 * 359.74122 * 18 17 16 20 20 C 1.38462 * 120.74687 * 359.97438 * 19 18 17 21 21 N 1.40052 * 120.52820 * 179.97438 * 20 19 18 22 22 H 0.96996 * 119.99562 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.46805 * 59.99757 * 9 7 2 24 24 H 1.08992 * 109.46894 * 299.99907 * 9 7 2 25 25 H 0.96994 * 120.00700 * 0.02562 * 10 9 7 26 26 H 1.09001 * 109.46953 * 299.99667 * 13 11 10 27 27 H 1.09000 * 109.47318 * 59.99264 * 13 11 10 28 28 H 1.08000 * 120.42870 * 0.02562 * 16 15 14 29 29 H 1.08006 * 119.50880 * 180.24893 * 17 16 15 30 30 H 1.07997 * 119.62966 * 179.97438 * 19 18 17 31 31 H 0.97004 * 119.99744 * 180.02562 * 21 20 19 32 32 H 0.97002 * 120.00070 * 0.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1942 -0.0011 10 7 3.9998 -2.5754 -0.0010 11 6 5.3248 -2.8217 -0.0009 12 8 6.1130 -1.8999 -0.0005 13 6 5.8272 -4.2425 -0.0014 14 16 7.6412 -4.2426 -0.0004 15 6 8.0375 -5.9594 -0.0003 16 6 7.0335 -6.9251 0.0050 17 6 7.3848 -8.2598 0.0001 18 7 8.6518 -8.6287 0.0007 19 6 9.6359 -7.7486 0.0008 20 6 9.3704 -6.3897 -0.0002 21 7 10.4179 -5.4601 0.0005 22 1 -0.4849 0.8400 0.0004 23 1 3.8752 -0.6805 0.8888 24 1 3.8745 -0.6802 -0.8911 25 1 3.3695 -3.3126 -0.0010 26 1 5.4638 -4.7566 0.8884 27 1 5.4639 -4.7561 -0.8915 28 1 5.9937 -6.6331 0.0087 29 1 6.6113 -9.0135 0.0001 30 1 10.6597 -8.0924 0.0017 31 1 10.2230 -4.5098 0.0001 32 1 11.3382 -5.7665 0.0013 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037190265.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:21 Heat of formation + Delta-G solvation = -27.630475 kcal Electronic energy + Delta-G solvation = -16749.864084 eV Core-core repulsion = 13835.341690 eV Total energy + Delta-G solvation = -2914.522394 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.078 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.94573 -40.60034 -36.25718 -36.03505 -34.48140 -33.30593 -31.62205 -29.93666 -29.23014 -24.88513 -24.35553 -23.68313 -21.75764 -19.59311 -18.77864 -18.47428 -17.81985 -17.51463 -17.28014 -16.79536 -16.17559 -15.94034 -15.69461 -15.24786 -14.99708 -14.72555 -14.66778 -14.43024 -14.00761 -13.61572 -13.12992 -12.99840 -12.71266 -12.36940 -11.94888 -11.67546 -11.49644 -11.22258 -11.09668 -10.93142 -10.40677 -10.04028 -9.18795 -8.40932 -8.24061 -6.48251 0.12248 0.17792 0.40428 1.28237 1.32590 1.35682 1.46847 1.53032 2.26926 2.33818 2.81824 2.87685 2.94744 3.70217 3.71708 3.85030 3.95707 4.03441 4.18457 4.40025 4.65761 4.75172 4.78558 4.98661 5.00112 5.23328 5.40771 5.62712 6.04524 6.29993 6.52095 6.69821 6.80543 7.11027 7.11520 7.27388 8.73649 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.044857 B = 0.003503 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.055079 B = 7991.343162 C = 8594.951823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.027 3.973 3 Si 0.936 3.064 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.547 4.547 8 H 0.062 0.938 9 C 0.232 3.768 10 N -0.695 5.695 11 C 0.518 3.482 12 O -0.580 6.580 13 C -0.133 4.133 14 S -0.059 6.059 15 C -0.154 4.154 16 C -0.140 4.140 17 C 0.045 3.955 18 N -0.473 5.473 19 C 0.033 3.967 20 C 0.182 3.818 21 N -0.856 5.856 22 H 0.272 0.728 23 H 0.016 0.984 24 H 0.015 0.985 25 H 0.413 0.587 26 H 0.144 0.856 27 H 0.145 0.855 28 H 0.154 0.846 29 H 0.177 0.823 30 H 0.178 0.822 31 H 0.402 0.598 32 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.035 -14.838 -0.003 23.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.174 4.174 3 Si 0.760 3.240 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.585 4.585 8 H 0.080 0.920 9 C 0.108 3.892 10 N -0.345 5.345 11 C 0.304 3.696 12 O -0.461 6.461 13 C -0.283 4.283 14 S 0.182 5.818 15 C -0.279 4.279 16 C -0.167 4.167 17 C -0.115 4.115 18 N -0.183 5.183 19 C -0.132 4.132 20 C 0.068 3.932 21 N -0.397 5.397 22 H 0.082 0.918 23 H 0.034 0.966 24 H 0.033 0.967 25 H 0.249 0.751 26 H 0.162 0.838 27 H 0.163 0.837 28 H 0.172 0.828 29 H 0.194 0.806 30 H 0.195 0.805 31 H 0.232 0.768 32 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 19.253 -13.936 0.000 23.767 hybrid contribution -1.249 0.685 -0.013 1.425 sum 18.004 -13.251 -0.013 22.355 Atomic orbital electron populations 1.69976 1.07704 1.28640 1.50602 1.25587 0.95511 1.02651 0.93608 0.85880 0.79304 0.79421 0.79444 1.19025 1.19969 1.18334 1.21281 0.89860 0.94669 1.52700 0.91976 1.19151 0.93426 0.80623 0.96003 1.45884 1.06092 1.10147 1.72424 1.20168 0.82676 0.90451 0.76342 1.90692 1.55968 1.47385 1.52028 1.23763 0.96563 0.97497 1.10499 1.85964 1.04114 0.99315 1.92421 1.22135 0.95733 0.98659 1.11416 1.22219 0.99789 0.93750 1.00929 1.22752 0.93370 0.94673 1.00661 1.67575 1.01246 1.38789 1.10649 1.22546 0.99936 0.86456 1.04231 1.18490 0.87219 0.91764 0.95738 1.42480 1.06567 1.07341 1.83271 0.91832 0.96640 0.96742 0.75062 0.83760 0.83739 0.82844 0.80630 0.80508 0.76823 0.75300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.53 13.96 21.45 0.30 -54.23 16 2 C 0.03 1.49 5.47 84.66 0.46 1.95 16 3 Si 0.94 43.02 27.47 68.60 1.88 44.90 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 6 H -0.26 -11.76 6.54 99.48 0.65 -11.11 16 7 C -0.55 -29.12 9.83 25.60 0.25 -28.87 16 8 H 0.06 3.45 7.84 -2.91 -0.02 3.43 16 9 C 0.23 10.84 4.50 85.63 0.39 11.22 16 10 N -0.70 -25.48 5.55 -466.80 -2.59 -28.07 16 11 C 0.52 17.67 7.85 87.66 0.69 18.36 16 12 O -0.58 -24.71 15.86 -3.02 -0.05 -24.75 16 13 C -0.13 -2.99 4.86 71.24 0.35 -2.64 16 14 S -0.06 -1.44 19.75 -56.49 -1.12 -2.55 16 15 C -0.15 -3.28 6.17 22.97 0.14 -3.14 16 16 C -0.14 -2.57 9.43 22.47 0.21 -2.36 16 17 C 0.05 0.83 11.17 84.62 0.95 1.78 16 18 N -0.47 -9.97 10.36 -195.62 -2.03 -12.00 16 19 C 0.03 0.60 11.05 84.72 0.94 1.53 16 20 C 0.18 3.49 6.80 38.32 0.26 3.75 16 21 N -0.86 -12.45 9.07 -50.69 -0.46 -12.91 16 22 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 23 H 0.02 0.77 7.20 -2.39 -0.02 0.76 16 24 H 0.01 0.71 7.57 -2.39 -0.02 0.69 16 25 H 0.41 12.72 8.32 -92.71 -0.77 11.95 16 26 H 0.14 2.47 7.78 -2.39 -0.02 2.45 16 27 H 0.14 2.47 7.81 -2.39 -0.02 2.45 16 28 H 0.15 2.08 6.07 -2.91 -0.02 2.06 16 29 H 0.18 2.28 8.06 -2.91 -0.02 2.26 16 30 H 0.18 2.18 8.06 -2.91 -0.02 2.15 16 31 H 0.40 6.45 7.52 -92.71 -0.70 5.75 16 32 H 0.42 3.54 8.86 -92.71 -0.82 2.72 16 Total: -1.00 -70.35 293.28 -0.58 -70.93 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: -1.16 Total: 17.10 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: 4.63 Total: 1.58 kcal Atomic # 7 Polarization: -102.43 SS G_CDS: -4.78 Total: -107.21 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -0.05 Total: -24.75 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 1.88 Total: 44.90 kcal Atomic # 16 Polarization: -1.44 SS G_CDS: -1.12 Total: -2.55 kcal Total: -70.35 -0.58 -70.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037190265.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.300 kcal (2) G-P(sol) polarization free energy of solvation -70.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds