Wall clock time and date at job start Mon Mar 30 2020 05:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00225 * 2 1 4 4 H 1.48500 * 109.47030 * 269.99958 * 3 2 1 5 5 H 1.48494 * 109.47363 * 29.99998 * 3 2 1 6 6 H 1.48502 * 109.47219 * 150.00164 * 3 2 1 7 7 C 1.37883 * 119.99748 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00219 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99908 * 179.97438 * 7 2 1 10 10 N 1.46492 * 109.47249 * 180.02562 * 9 7 2 11 11 C 1.34775 * 120.00576 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99542 * 0.02562 * 11 10 9 13 13 C 1.50697 * 120.00573 * 180.02562 * 11 10 9 14 14 S 1.81397 * 109.47385 * 179.97438 * 13 11 10 15 15 C 1.76198 * 103.00056 * 180.02562 * 14 13 11 16 16 C 1.39146 * 119.62862 * 180.02562 * 15 14 13 17 17 C 1.38261 * 119.16622 * 180.02562 * 16 15 14 18 18 C 1.39431 * 118.45289 * 359.97438 * 17 16 15 19 19 N 1.40046 * 120.40286 * 180.02562 * 18 17 16 20 20 C 1.38636 * 119.19532 * 0.02562 * 18 17 16 21 21 N 1.31984 * 120.75773 * 359.97438 * 20 18 17 22 22 H 0.97007 * 119.99645 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47108 * 60.00008 * 9 7 2 24 24 H 1.09000 * 109.47093 * 300.00592 * 9 7 2 25 25 H 0.97006 * 119.99688 * 359.97438 * 10 9 7 26 26 H 1.09000 * 109.47149 * 59.99922 * 13 11 10 27 27 H 1.08996 * 109.46996 * 300.00173 * 13 11 10 28 28 H 1.07995 * 120.42114 * 0.02562 * 16 15 14 29 29 H 1.08001 * 120.76976 * 180.02562 * 17 16 15 30 30 H 0.97007 * 119.99750 * 179.97438 * 19 18 17 31 31 H 0.96998 * 120.00342 * 359.97042 * 19 18 17 32 32 H 1.07999 * 119.62255 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0000 10 7 3.9998 -2.5753 0.0001 11 6 5.3248 -2.8217 -0.0009 12 8 6.1130 -1.8999 -0.0014 13 6 5.8271 -4.2425 -0.0014 14 16 7.6411 -4.2426 -0.0035 15 6 8.0374 -5.9595 -0.0045 16 6 9.3706 -6.3577 -0.0057 17 6 9.6707 -7.7074 -0.0071 18 6 8.6182 -8.6219 -0.0067 19 7 8.8755 -9.9985 -0.0075 20 6 7.3140 -8.1519 -0.0055 21 7 7.0635 -6.8560 -0.0043 22 1 -0.4850 0.8401 0.0004 23 1 3.8752 -0.6798 0.8894 24 1 3.8745 -0.6809 -0.8905 25 1 3.3694 -3.3126 0.0009 26 1 5.4631 -4.7563 -0.8911 27 1 5.4644 -4.7564 0.8888 28 1 10.1611 -5.6219 -0.0055 29 1 10.6965 -8.0453 -0.0075 30 1 8.1387 -10.6296 -0.0069 31 1 9.7903 -10.3210 -0.0088 32 1 6.4935 -8.8542 -0.0057 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037191865.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:49 Heat of formation + Delta-G solvation = -4.941770 kcal Electronic energy + Delta-G solvation = -16553.684965 eV Core-core repulsion = 13640.146427 eV Total energy + Delta-G solvation = -2913.538538 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.078 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.20261 -38.89756 -35.35726 -34.34471 -32.40744 -32.29102 -30.17236 -29.27174 -27.31781 -23.98342 -23.22305 -22.11123 -20.05382 -18.29266 -17.72058 -17.24568 -16.99615 -15.91625 -15.60100 -15.31002 -15.24762 -14.66636 -14.42562 -14.02296 -13.94119 -13.26942 -13.05389 -12.87595 -12.44159 -12.15791 -11.96325 -11.68417 -11.00969 -10.76072 -10.33795 -9.96808 -9.95598 -9.76940 -9.50858 -9.36562 -8.80248 -8.76037 -8.19918 -7.12883 -6.21018 -4.23554 0.98359 1.10017 1.49472 2.36357 3.12580 3.28318 3.34839 3.41380 3.43431 3.58004 3.96531 4.34288 4.42299 4.57592 4.80388 4.93690 5.14050 5.27615 5.29011 5.43751 5.57001 5.70478 5.72969 6.16929 6.78262 6.93792 7.06142 7.16620 7.26688 7.36976 7.68256 8.08745 8.47203 8.72432 8.85552 9.38585 10.90861 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.050178 B = 0.003239 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.874941 B = 8642.607563 C = 9180.037003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.544 4.544 8 H 0.080 0.920 9 C 0.221 3.779 10 N -0.698 5.698 11 C 0.516 3.484 12 O -0.544 6.544 13 C -0.131 4.131 14 S -0.007 6.007 15 C 0.052 3.948 16 C -0.100 4.100 17 C -0.139 4.139 18 C 0.154 3.846 19 N -0.873 5.873 20 C 0.044 3.956 21 N -0.451 5.451 22 H 0.268 0.732 23 H 0.027 0.973 24 H 0.023 0.977 25 H 0.399 0.601 26 H 0.115 0.885 27 H 0.115 0.885 28 H 0.139 0.861 29 H 0.135 0.865 30 H 0.400 0.600 31 H 0.399 0.601 32 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.252 -19.814 0.014 26.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.582 4.582 8 H 0.098 0.902 9 C 0.099 3.901 10 N -0.347 5.347 11 C 0.299 3.701 12 O -0.423 6.423 13 C -0.283 4.283 14 S 0.232 5.768 15 C -0.198 4.198 16 C -0.127 4.127 17 C -0.170 4.170 18 C 0.045 3.955 19 N -0.414 5.414 20 C -0.122 4.122 21 N -0.163 5.163 22 H 0.078 0.922 23 H 0.045 0.955 24 H 0.041 0.959 25 H 0.233 0.767 26 H 0.133 0.867 27 H 0.133 0.867 28 H 0.157 0.843 29 H 0.153 0.847 30 H 0.229 0.771 31 H 0.227 0.773 32 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 18.380 -17.622 0.017 25.463 hybrid contribution -0.009 -1.465 -0.025 1.465 sum 18.371 -19.087 -0.008 26.492 Atomic orbital electron populations 1.69881 1.06223 1.27450 1.49363 1.24794 0.94800 0.99191 0.93828 0.86812 0.80601 0.83181 0.79092 1.19807 1.20884 1.18431 1.21081 0.88421 0.95292 1.53428 0.90178 1.19546 0.95320 0.78275 0.96997 1.46085 1.05127 1.11345 1.72111 1.19669 0.83684 0.88980 0.77789 1.90691 1.55174 1.45618 1.50849 1.23595 0.96691 0.99734 1.08263 1.86087 1.03925 0.95066 1.91711 1.23256 0.92060 0.99467 1.04993 1.21419 0.95845 0.95895 0.99491 1.20932 0.98435 0.92212 1.05457 1.18770 0.94774 0.85382 0.96573 1.42387 1.10722 1.02868 1.85404 1.22206 0.93871 0.92196 1.03966 1.67961 1.34832 1.01810 1.11695 0.92237 0.95474 0.95940 0.76704 0.86668 0.86666 0.84273 0.84710 0.77124 0.77305 0.82950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.59 13.96 55.43 0.77 -25.82 16 2 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 3 Si 0.88 21.56 27.47 -169.99 -4.67 16.89 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 7 C -0.54 -15.01 9.83 -34.44 -0.34 -15.34 16 8 H 0.08 2.29 7.84 -52.49 -0.41 1.88 16 9 C 0.22 5.48 4.50 -5.20 -0.02 5.45 16 10 N -0.70 -14.36 5.55 -61.48 -0.34 -14.70 16 11 C 0.52 10.13 7.85 -10.99 -0.09 10.04 16 12 O -0.54 -12.61 15.86 5.56 0.09 -12.52 16 13 C -0.13 -2.01 5.68 36.00 0.20 -1.80 16 14 S -0.01 -0.10 21.04 -107.50 -2.26 -2.36 16 15 C 0.05 0.69 6.99 -16.98 -0.12 0.57 16 16 C -0.10 -1.05 9.83 -39.24 -0.39 -1.44 16 17 C -0.14 -1.18 10.04 -39.13 -0.39 -1.57 16 18 C 0.15 1.28 6.79 -83.51 -0.57 0.71 16 19 N -0.87 -4.11 9.11 32.53 0.30 -3.81 16 20 C 0.04 0.44 11.05 -17.34 -0.19 0.25 16 21 N -0.45 -5.84 9.41 -11.98 -0.11 -5.95 16 22 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 23 H 0.03 0.71 7.20 -51.93 -0.37 0.34 16 24 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 25 H 0.40 7.19 8.32 -40.82 -0.34 6.85 16 26 H 0.12 1.60 8.14 -51.92 -0.42 1.18 16 27 H 0.12 1.61 8.14 -51.93 -0.42 1.18 16 28 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 29 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 30 H 0.40 1.23 8.86 -40.82 -0.36 0.87 16 31 H 0.40 1.15 8.86 -40.82 -0.36 0.79 16 32 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 298.59 15.07 4.50 4.50 Total: -1.00 -33.85 298.59 -7.25 -41.10 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -3.52 Total: 3.70 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -2.00 Total: -1.02 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: 0.62 Total: -50.27 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.09 Total: -12.52 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Atomic # 16 Polarization: -0.10 SS G_CDS: -2.26 Total: -2.36 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -33.85 -7.25 -41.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037191865.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.154 kcal (2) G-P(sol) polarization free energy of solvation -33.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds