Wall clock time and date at job start Mon Mar 30 2020 05:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 110.26387 * 2 1 4 4 C 1.53749 * 110.29785 * 237.83240 * 2 1 3 5 5 C 1.51222 * 104.53714 * 241.06820 * 4 2 1 6 6 C 1.38171 * 130.98877 * 180.02562 * 5 4 2 7 7 C 1.38225 * 120.15062 * 180.25168 * 6 5 4 8 8 C 1.38307 * 119.83208 * 359.42150 * 7 6 5 9 9 C 1.37820 * 120.23211 * 0.59198 * 8 7 6 10 10 C 1.38603 * 108.53739 * 0.02562 * 5 4 2 11 11 N 1.39575 * 111.64805 * 359.97438 * 10 5 4 12 12 S 1.65606 * 124.95283 * 180.02562 * 11 10 5 13 13 O 1.42101 * 106.40233 * 203.51818 * 12 11 10 14 14 O 1.42097 * 106.40233 * 336.43551 * 12 11 10 15 15 C 1.76197 * 107.21880 * 89.97949 * 12 11 10 16 16 H 1.08003 * 119.99819 * 359.97438 * 15 12 11 17 17 C 1.37875 * 120.00293 * 180.02562 * 15 12 11 18 18 N 1.31513 * 119.99827 * 359.97438 * 17 15 12 19 19 Si 1.86801 * 120.00256 * 179.97438 * 17 15 12 20 20 H 1.48502 * 109.47003 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47240 * 119.99464 * 19 17 15 22 22 H 1.48498 * 109.47062 * 239.99881 * 19 17 15 23 23 H 1.08999 * 109.46821 * 297.92819 * 1 2 3 24 24 H 1.08998 * 109.47158 * 57.93039 * 1 2 3 25 25 H 1.09003 * 109.46917 * 177.92953 * 1 2 3 26 26 H 1.09008 * 110.42225 * 122.30564 * 4 2 1 27 27 H 1.08995 * 110.42393 * 359.83457 * 4 2 1 28 28 H 1.08002 * 119.92127 * 359.97059 * 6 5 4 29 29 H 1.08002 * 120.08509 * 179.69744 * 7 6 5 30 30 H 1.08006 * 119.88203 * 180.28438 * 8 7 6 31 31 H 1.08000 * 119.86257 * 179.72222 * 9 8 7 32 32 H 0.96998 * 120.00304 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9075 1.0225 0.0000 4 6 2.0634 -0.7677 -1.2207 5 6 2.8592 -1.9109 -0.6320 6 6 3.5680 -2.9294 -1.2399 7 6 4.2204 -3.8756 -0.4721 8 6 4.1723 -3.7941 0.9078 9 6 3.4664 -2.7803 1.5188 10 6 2.7990 -1.8241 0.7500 11 7 2.0382 -0.7299 1.1645 12 16 1.7517 -0.3166 2.7424 13 8 0.5555 0.4505 2.7455 14 8 1.9149 -1.5048 3.5044 15 6 3.0435 0.7741 3.2386 16 1 3.8214 1.0432 2.5395 17 6 3.0617 1.2834 4.5198 18 7 2.1146 0.9554 5.3713 19 14 4.4316 2.4392 5.0461 20 1 5.3664 2.6480 3.9112 21 1 3.8496 3.7428 5.4548 22 1 5.1681 1.8451 6.1905 23 1 -0.3633 0.4813 0.9080 24 1 -0.3633 0.5456 -0.8708 25 1 -0.3633 -1.0270 -0.0371 26 1 2.7074 -0.1259 -1.8220 27 1 1.2373 -1.1488 -1.8210 28 1 3.6086 -2.9888 -2.3175 29 1 4.7700 -4.6740 -0.9484 30 1 4.6856 -4.5304 1.5085 31 1 3.4291 -2.7250 2.5968 32 1 2.1272 1.3139 6.2725 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044509475.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:23 Heat of formation + Delta-G solvation = -62.359463 kcal Electronic energy + Delta-G solvation = -18757.107286 eV Core-core repulsion = 15808.786179 eV Total energy + Delta-G solvation = -2948.321107 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.06522 -36.47110 -35.41052 -34.17008 -33.20092 -31.87071 -30.46324 -28.74807 -26.27589 -26.01708 -22.21018 -21.17972 -21.01303 -18.92032 -17.72184 -16.54694 -15.91178 -15.39794 -15.28694 -14.71952 -14.04270 -14.00764 -13.79944 -13.29272 -12.80284 -12.54434 -12.42125 -12.07217 -12.03618 -11.80541 -11.36730 -11.29717 -11.27307 -10.91478 -10.74272 -10.63740 -10.48075 -10.04994 -10.02782 -10.00858 -9.34547 -8.92427 -8.39799 -7.35273 -6.79094 -5.44116 1.77127 1.86935 1.99006 3.00411 3.08643 3.16652 3.94794 4.18291 4.19388 4.53274 4.86956 5.01054 5.25949 5.35136 5.43564 5.50185 5.64841 5.68956 5.79441 5.82548 5.97744 6.00191 6.13654 6.31393 6.35259 6.41297 6.70284 6.76369 6.89573 6.94514 7.12486 7.21531 7.25586 7.58969 7.87675 8.78276 10.13561 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.022425 B = 0.008141 C = 0.007112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.302660 B = 3438.392862 C = 3935.826162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.145 3.855 3 H 0.087 0.913 4 C -0.076 4.076 5 C -0.153 4.153 6 C -0.081 4.081 7 C -0.164 4.164 8 C -0.089 4.089 9 C -0.155 4.155 10 C 0.190 3.810 11 N -0.940 5.940 12 S 2.709 3.291 13 O -0.987 6.987 14 O -0.988 6.988 15 C -1.016 5.016 16 H 0.104 0.896 17 C 0.134 3.866 18 N -0.844 5.844 19 Si 0.923 3.077 20 H -0.261 1.261 21 H -0.269 1.269 22 H -0.269 1.269 23 H 0.099 0.901 24 H 0.066 0.934 25 H 0.056 0.944 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.116 0.884 29 H 0.118 0.882 30 H 0.123 0.877 31 H 0.149 0.851 32 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.576 -3.713 -11.314 12.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.039 3.961 3 H 0.105 0.895 4 C -0.114 4.114 5 C -0.158 4.158 6 C -0.100 4.100 7 C -0.184 4.184 8 C -0.108 4.108 9 C -0.176 4.176 10 C 0.091 3.909 11 N -0.757 5.757 12 S 2.812 3.188 13 O -0.977 6.977 14 O -0.979 6.979 15 C -1.150 5.150 16 H 0.123 0.877 17 C -0.085 4.085 18 N -0.473 5.473 19 Si 0.746 3.254 20 H -0.185 1.185 21 H -0.194 1.194 22 H -0.194 1.194 23 H 0.118 0.882 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.101 0.899 27 H 0.102 0.898 28 H 0.134 0.866 29 H 0.136 0.864 30 H 0.141 0.859 31 H 0.167 0.833 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.622 -3.889 -10.511 11.325 hybrid contribution 1.219 0.947 0.267 1.566 sum 2.841 -2.942 -10.244 11.030 Atomic orbital electron populations 1.22569 0.94053 1.02752 1.04947 1.21316 0.94905 0.95955 0.83904 0.89453 1.21153 0.98726 0.94538 0.97030 1.20149 1.03460 0.99101 0.93093 1.20245 0.96991 0.93676 0.99057 1.20844 1.03341 1.00292 0.93890 1.20812 0.98034 0.97358 0.94553 1.21199 0.99617 0.94876 1.01923 1.18163 0.91490 0.87965 0.93332 1.57130 1.59597 1.33459 1.25507 1.00892 0.75388 0.74365 0.68160 1.93328 1.48220 1.72131 1.84069 1.93348 1.87935 1.50366 1.66226 1.30488 1.30391 1.47546 1.06591 0.87741 1.24760 0.95820 0.93703 0.94207 1.69889 1.30962 1.39374 1.07099 0.86083 0.80527 0.79531 0.79216 1.18483 1.19422 1.19403 0.88229 0.91485 0.92536 0.89949 0.89792 0.86583 0.86391 0.85893 0.83303 0.89721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.08 9.02 37.16 0.34 -2.75 16 2 C 0.14 2.56 3.86 -67.52 -0.26 2.29 16 3 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 4 C -0.08 -1.10 6.58 -27.24 -0.18 -1.28 16 5 C -0.15 -2.57 6.23 -104.26 -0.65 -3.22 16 6 C -0.08 -1.16 10.03 -39.61 -0.40 -1.55 16 7 C -0.16 -2.30 10.06 -39.56 -0.40 -2.69 16 8 C -0.09 -1.42 10.02 -39.71 -0.40 -1.82 16 9 C -0.15 -3.09 9.43 -39.20 -0.37 -3.46 16 10 C 0.19 3.86 6.63 -83.66 -0.55 3.31 16 11 N -0.94 -20.44 3.19 -51.67 -0.16 -20.60 16 12 S 2.71 72.42 5.08 -107.50 -0.55 71.88 16 13 O -0.99 -27.87 15.04 -57.17 -0.86 -28.73 16 14 O -0.99 -28.52 15.26 -57.17 -0.87 -29.39 16 15 C -1.02 -28.09 9.75 30.60 0.30 -27.79 16 16 H 0.10 2.71 7.81 -52.48 -0.41 2.30 16 17 C 0.13 3.69 5.46 -17.82 -0.10 3.60 16 18 N -0.84 -24.44 13.19 55.43 0.73 -23.70 16 19 Si 0.92 20.46 29.54 -169.99 -5.02 15.44 16 20 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 21 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 22 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 23 H 0.10 1.98 5.64 -51.93 -0.29 1.68 16 24 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.08 0.99 8.14 -51.92 -0.42 0.57 16 27 H 0.08 1.02 7.70 -51.93 -0.40 0.62 16 28 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 29 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 30 H 0.12 1.62 8.06 -52.48 -0.42 1.20 16 31 H 0.15 3.30 6.09 -52.49 -0.32 2.98 16 32 H 0.29 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 281.99 15.07 4.25 4.25 Total: -1.00 -33.13 281.99 -8.67 -41.81 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -3.52 Total: 4.41 kcal Atomic # 6 Polarization: -32.68 SS G_CDS: -2.67 Total: -35.35 kcal Atomic # 7 Polarization: -44.87 SS G_CDS: 0.57 Total: -44.31 kcal Atomic # 8 Polarization: -56.39 SS G_CDS: -1.73 Total: -58.12 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 16 Polarization: 72.42 SS G_CDS: -0.55 Total: 71.88 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -33.13 -8.67 -41.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044509475.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.554 kcal (2) G-P(sol) polarization free energy of solvation -33.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds